RNA–Protein interactions for RNA: YPL004C

LSP1, Transcript of Eisosome core component, yeastyeast

Gene LSP1, Length 1,026 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LSP1YPL004C MON2P48563 1636 aaPredicted RBP15.74■□□□□ 0.11
LSP1YPL004C INO80P53115 1489 aa15.66■□□□□ 0.1
LSP1YPL004C SGS1P35187 1447 aa15.36■□□□□ 0.05
LSP1YPL004C TCB3Q03640 1545 aaKnown RBP15.32■□□□□ 0.04
LSP1YPL004C TY1B-DR4Q07793 1604 aa15.24■□□□□ 0.03
LSP1YPL004C SWR1Q05471 1514 aa15.13■□□□□ 0.01
LSP1YPL004C DNA2P38859 1522 aa14.96□□□□□ -0.02
LSP1YPL004C KOG1P38873 1557 aa14.82□□□□□ -0.04
LSP1YPL004C HSL1P34244 1518 aa14.75□□□□□ -0.05
LSP1YPL004C SPT6P23615 1451 aaKnown RBP14.72□□□□□ -0.05
LSP1YPL004C SPA2P23201 1466 aaKnown RBP14.57□□□□□ -0.08
LSP1YPL004C HIR3P47171 1648 aa14.47□□□□□ -0.09
LSP1YPL004C SSN2P38931 1420 aa14.34□□□□□ -0.11
LSP1YPL004C XRN1P22147 1528 aaKnown RBP14.25□□□□□ -0.13
LSP1YPL004C ECM5Q03214 1411 aa14.24□□□□□ -0.13
LSP1YPL004C THO2P53552 1597 aaKnown RBP14.22□□□□□ -0.13
LSP1YPL004C BUD4P47136 1447 aa14.18□□□□□ -0.14
LSP1YPL004C RSE1Q04693 1361 aaKnown RBP14.13□□□□□ -0.15
LSP1YPL004C REV3P14284 1504 aa14□□□□□ -0.17
LSP1YPL004C MDS3P53094 1487 aa13.98□□□□□ -0.17
LSP1YPL004C PEP1P32319 1579 aa13.96□□□□□ -0.18
LSP1YPL004C ATG2P53855 1592 aa13.92□□□□□ -0.18
LSP1YPL004C SIN3P22579 1536 aa13.91□□□□□ -0.18
LSP1YPL004C DRS1P32892 752 aaKnown RBP13.87□□□□□ -0.19
LSP1YPL004C TAF2P23255 1407 aa13.79□□□□□ -0.2
LSP1YPL004C SSK2P53599 1579 aa13.79□□□□□ -0.2
LSP1YPL004C ESP1Q03018 1630 aa13.72□□□□□ -0.21
LSP1YPL004C SKI3P17883 1432 aaKnown RBP13.71□□□□□ -0.22
LSP1YPL004C BPT1P14772 1559 aa13.61□□□□□ -0.23
LSP1YPL004C MTC1P47018 478 aaKnown RBP13.57□□□□□ -0.24
LSP1YPL004C MYO2P19524 1574 aaKnown RBP13.55□□□□□ -0.24
LSP1YPL004C YPK9Q12697 1472 aa13.54□□□□□ -0.24
LSP1YPL004C SCC2Q04002 1493 aa13.47□□□□□ -0.25
LSP1YPL004C UFD4P33202 1483 aa13.46□□□□□ -0.25
LSP1YPL004C RPO31P04051 1460 aa13.42□□□□□ -0.26
LSP1YPL004C YCF1P39109 1515 aaKnown RBP13.38□□□□□ -0.27
LSP1YPL004C TY2B-LR1P0C2J3 1770 aa13.32□□□□□ -0.28
LSP1YPL004C TY2B-FP0CX63 1770 aa13.32□□□□□ -0.28
LSP1YPL004C TY2B-GR2P0CX64 1770 aa13.32□□□□□ -0.28
LSP1YPL004C TY2B-CP25384 1770 aa13.32□□□□□ -0.28
LSP1YPL004C TY2B-DR2Q03494 1770 aa13.32□□□□□ -0.28
LSP1YPL004C TY1B-DR1Q03855 1755 aa13.32□□□□□ -0.28
LSP1YPL004C TY2B-DR3Q07791 1770 aaKnown RBP13.32□□□□□ -0.28
LSP1YPL004C TY2B-OR1Q12113 1770 aa13.32□□□□□ -0.28
LSP1YPL004C TY2B-DR1Q12472 1770 aa13.32□□□□□ -0.28
LSP1YPL004C TY2B-OR2Q12501 1770 aa13.32□□□□□ -0.28
LSP1YPL004C POL1P13382 1468 aa13.24□□□□□ -0.29
LSP1YPL004C TOP2P06786 1428 aaKnown RBP13.23□□□□□ -0.29
LSP1YPL004C TY1B-BRQ12193 1756 aa13.22□□□□□ -0.29
LSP1YPL004C TY1B-GR3Q12316 1755 aa13.22□□□□□ -0.29
LSP1YPL004C TY1B-ORQ92393 1755 aa13.22□□□□□ -0.29
LSP1YPL004C CHD1P32657 1468 aa13.21□□□□□ -0.3
LSP1YPL004C CDC25P04821 1589 aa13.2□□□□□ -0.3
LSP1YPL004C RKR1Q04781 1562 aa13.2□□□□□ -0.3
LSP1YPL004C TY2B-BQ12491 1770 aa13.18□□□□□ -0.3
LSP1YPL004C TY1B-DR3Q99231 1755 aa13.18□□□□□ -0.3
LSP1YPL004C TY1B-HO13535 1793 aa13.15□□□□□ -0.31
LSP1YPL004C TY1B-DR5P0C2I2 1755 aa13.15□□□□□ -0.31
LSP1YPL004C TY1B-DR6P0C2I3 1755 aa13.15□□□□□ -0.31
LSP1YPL004C TY1B-LR2P0C2I5 1755 aa13.15□□□□□ -0.31
LSP1YPL004C TY1B-LR3P0C2I6 1755 aaKnown RBP13.15□□□□□ -0.31
LSP1YPL004C TY1B-PR1P0C2I9 1755 aaKnown RBP13.15□□□□□ -0.31
LSP1YPL004C TY1B-PR2P0C2J0 1756 aa13.15□□□□□ -0.31
LSP1YPL004C TY1B-PR3P0C2J1 1755 aaKnown RBP13.15□□□□□ -0.31
LSP1YPL004C TY1B-JR1P47098 1755 aa13.15□□□□□ -0.31
LSP1YPL004C TY1B-ML2Q03434 1755 aaKnown RBP13.15□□□□□ -0.31
LSP1YPL004C TY1B-ER1Q03612 1755 aa13.15□□□□□ -0.31
LSP1YPL004C TY1B-ML1Q04711 1755 aaKnown RBP13.15□□□□□ -0.31
LSP1YPL004C TY1B-GR2Q12269 1755 aa13.15□□□□□ -0.31
LSP1YPL004C TY1B-OLQ12273 1755 aa13.15□□□□□ -0.31
LSP1YPL004C TY1B-PLQ12414 1755 aaKnown RBP13.15□□□□□ -0.31
LSP1YPL004C STU1P38198 1513 aa13.11□□□□□ -0.31
LSP1YPL004C PAN1P32521 1480 aa13.1□□□□□ -0.31
LSP1YPL004C ESC1Q03661 1658 aaKnown RBP13.1□□□□□ -0.31
LSP1YPL004C YOR1P53049 1477 aa13.1□□□□□ -0.31
LSP1YPL004C DNF1P32660 1571 aa13.09□□□□□ -0.31
LSP1YPL004C SMC4Q12267 1418 aa13.07□□□□□ -0.32
LSP1YPL004C RQC2Q12532 1038 aaKnown RBP13.06□□□□□ -0.32
LSP1YPL004C MMS22Q06164 1454 aa13.04□□□□□ -0.32
LSP1YPL004C RPA190P10964 1664 aaKnown RBP13.02□□□□□ -0.33
LSP1YPL004C MET5P47169 1442 aa13□□□□□ -0.33
LSP1YPL004C SPP41P38904 1435 aa12.93□□□□□ -0.34
LSP1YPL004C YTA7P40340 1379 aa12.92□□□□□ -0.34
LSP1YPL004C TY1B-JR2P47100 1755 aaKnown RBP12.9□□□□□ -0.34
LSP1YPL004C TY1B-ER2Q03619 1755 aa12.9□□□□□ -0.34
LSP1YPL004C TY1B-MR1Q04214 1755 aa12.9□□□□□ -0.34
LSP1YPL004C TY1B-MR2Q04670 1755 aaKnown RBP12.9□□□□□ -0.34
LSP1YPL004C TY1B-LR1Q12088 1755 aaKnown RBP12.9□□□□□ -0.34
LSP1YPL004C TY1B-NL1Q12112 1755 aa12.9□□□□□ -0.34
LSP1YPL004C TY1B-GR1Q12141 1755 aa12.9□□□□□ -0.34
LSP1YPL004C TY1B-BLQ12490 1755 aa12.9□□□□□ -0.34
LSP1YPL004C TRM732Q03496 1420 aa12.88□□□□□ -0.35
LSP1YPL004C MYO4P32492 1471 aa12.85□□□□□ -0.35
LSP1YPL004C TSC11P40061 1430 aa12.85□□□□□ -0.35
LSP1YPL004C VTH1P40438 1549 aa12.83□□□□□ -0.36
LSP1YPL004C VTH2P40890 1549 aa12.83□□□□□ -0.36
LSP1YPL004C YRF1-1P0CX20 1796 aa12.79□□□□□ -0.36
LSP1YPL004C YRF1-5P0CX21 1796 aa12.79□□□□□ -0.36
LSP1YPL004C YRF1-8P0CX22 1796 aa12.79□□□□□ -0.36
LSP1YPL004C LTE1P07866 1435 aa12.77□□□□□ -0.37
Retrieved 100 of 5,963 RNA–protein pairs in 10.8 ms