RNA–Protein interactions for RNA: YOR142W

LSC1, Transcript of Alpha subunit of succinyl-CoA ligase, yeastyeast

Gene LSC1, Length 990 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LSC1YOR142W MON2P48563 1636 aaPredicted RBP13.49□□□□□ -0.25
LSC1YOR142W INO80P53115 1489 aa13.34□□□□□ -0.27
LSC1YOR142W TY1B-DR4Q07793 1604 aa13.02□□□□□ -0.33
LSC1YOR142W TCB3Q03640 1545 aaKnown RBP12.98□□□□□ -0.33
LSC1YOR142W SGS1P35187 1447 aa12.96□□□□□ -0.34
LSC1YOR142W SWR1Q05471 1514 aa12.94□□□□□ -0.34
LSC1YOR142W DNA2P38859 1522 aa12.79□□□□□ -0.36
LSC1YOR142W KOG1P38873 1557 aa12.64□□□□□ -0.39
LSC1YOR142W HSL1P34244 1518 aa12.59□□□□□ -0.39
LSC1YOR142W SPT6P23615 1451 aaKnown RBP12.53□□□□□ -0.4
LSC1YOR142W SPA2P23201 1466 aaKnown RBP12.37□□□□□ -0.43
LSC1YOR142W HIR3P47171 1648 aa12.33□□□□□ -0.44
LSC1YOR142W THO2P53552 1597 aaKnown RBP12.11□□□□□ -0.47
LSC1YOR142W XRN1P22147 1528 aaKnown RBP12.11□□□□□ -0.47
LSC1YOR142W SSN2P38931 1420 aa12.11□□□□□ -0.47
LSC1YOR142W ECM5Q03214 1411 aa12.09□□□□□ -0.47
LSC1YOR142W BUD4P47136 1447 aa12.05□□□□□ -0.48
LSC1YOR142W RSE1Q04693 1361 aaKnown RBP12.05□□□□□ -0.48
LSC1YOR142W MDS3P53094 1487 aa11.95□□□□□ -0.5
LSC1YOR142W REV3P14284 1504 aa11.93□□□□□ -0.5
LSC1YOR142W PEP1P32319 1579 aa11.91□□□□□ -0.5
LSC1YOR142W ATG2P53855 1592 aa11.91□□□□□ -0.5
LSC1YOR142W SIN3P22579 1536 aa11.82□□□□□ -0.52
LSC1YOR142W SSK2P53599 1579 aa11.74□□□□□ -0.53
LSC1YOR142W TAF2P23255 1407 aa11.72□□□□□ -0.53
LSC1YOR142W ESP1Q03018 1630 aa11.7□□□□□ -0.54
LSC1YOR142W SKI3P17883 1432 aaKnown RBP11.63□□□□□ -0.55
LSC1YOR142W BPT1P14772 1559 aa11.6□□□□□ -0.55
LSC1YOR142W DRS1P32892 752 aaKnown RBP11.6□□□□□ -0.55
LSC1YOR142W MTC1P47018 478 aaKnown RBP11.55□□□□□ -0.56
LSC1YOR142W MYO2P19524 1574 aaKnown RBP11.52□□□□□ -0.57
LSC1YOR142W YPK9Q12697 1472 aa11.47□□□□□ -0.57
LSC1YOR142W SCC2Q04002 1493 aa11.45□□□□□ -0.58
LSC1YOR142W UFD4P33202 1483 aa11.43□□□□□ -0.58
LSC1YOR142W TY2B-LR1P0C2J3 1770 aa11.41□□□□□ -0.58
LSC1YOR142W TY2B-FP0CX63 1770 aa11.41□□□□□ -0.58
LSC1YOR142W TY2B-GR2P0CX64 1770 aa11.41□□□□□ -0.58
LSC1YOR142W TY2B-CP25384 1770 aa11.41□□□□□ -0.58
LSC1YOR142W TY2B-DR2Q03494 1770 aa11.41□□□□□ -0.58
LSC1YOR142W TY1B-DR1Q03855 1755 aa11.41□□□□□ -0.58
LSC1YOR142W TY2B-DR3Q07791 1770 aaKnown RBP11.41□□□□□ -0.58
LSC1YOR142W TY2B-OR1Q12113 1770 aa11.41□□□□□ -0.58
LSC1YOR142W TY2B-DR1Q12472 1770 aa11.41□□□□□ -0.58
LSC1YOR142W TY2B-OR2Q12501 1770 aa11.41□□□□□ -0.58
LSC1YOR142W YCF1P39109 1515 aaKnown RBP11.41□□□□□ -0.58
LSC1YOR142W RPO31P04051 1460 aa11.36□□□□□ -0.59
LSC1YOR142W TY1B-BRQ12193 1756 aa11.32□□□□□ -0.6
LSC1YOR142W TY1B-GR3Q12316 1755 aa11.32□□□□□ -0.6
LSC1YOR142W TY1B-ORQ92393 1755 aa11.32□□□□□ -0.6
LSC1YOR142W TY2B-BQ12491 1770 aa11.28□□□□□ -0.6
LSC1YOR142W TY1B-DR3Q99231 1755 aa11.28□□□□□ -0.6
LSC1YOR142W CDC25P04821 1589 aa11.27□□□□□ -0.61
LSC1YOR142W ESC1Q03661 1658 aaKnown RBP11.25□□□□□ -0.61
LSC1YOR142W TY1B-HO13535 1793 aa11.24□□□□□ -0.61
LSC1YOR142W TY1B-DR5P0C2I2 1755 aa11.24□□□□□ -0.61
LSC1YOR142W TY1B-DR6P0C2I3 1755 aa11.24□□□□□ -0.61
LSC1YOR142W TY1B-LR2P0C2I5 1755 aa11.24□□□□□ -0.61
LSC1YOR142W TY1B-LR3P0C2I6 1755 aaKnown RBP11.24□□□□□ -0.61
LSC1YOR142W TY1B-PR1P0C2I9 1755 aaKnown RBP11.24□□□□□ -0.61
LSC1YOR142W TY1B-PR2P0C2J0 1756 aa11.24□□□□□ -0.61
LSC1YOR142W TY1B-PR3P0C2J1 1755 aaKnown RBP11.24□□□□□ -0.61
LSC1YOR142W TY1B-JR1P47098 1755 aa11.24□□□□□ -0.61
LSC1YOR142W TY1B-ML2Q03434 1755 aaKnown RBP11.24□□□□□ -0.61
LSC1YOR142W TY1B-ER1Q03612 1755 aa11.24□□□□□ -0.61
LSC1YOR142W TY1B-ML1Q04711 1755 aaKnown RBP11.24□□□□□ -0.61
LSC1YOR142W TY1B-GR2Q12269 1755 aa11.24□□□□□ -0.61
LSC1YOR142W TY1B-OLQ12273 1755 aa11.24□□□□□ -0.61
LSC1YOR142W TY1B-PLQ12414 1755 aaKnown RBP11.24□□□□□ -0.61
LSC1YOR142W RKR1Q04781 1562 aa11.23□□□□□ -0.61
LSC1YOR142W CHD1P32657 1468 aa11.2□□□□□ -0.62
LSC1YOR142W POL1P13382 1468 aa11.19□□□□□ -0.62
LSC1YOR142W DNF1P32660 1571 aa11.19□□□□□ -0.62
LSC1YOR142W TOP2P06786 1428 aaKnown RBP11.18□□□□□ -0.62
LSC1YOR142W RPA190P10964 1664 aaKnown RBP11.14□□□□□ -0.63
LSC1YOR142W STU1P38198 1513 aa11.11□□□□□ -0.63
LSC1YOR142W PAN1P32521 1480 aa11.11□□□□□ -0.63
LSC1YOR142W YOR1P53049 1477 aa11.08□□□□□ -0.64
LSC1YOR142W RQC2Q12532 1038 aaKnown RBP11.06□□□□□ -0.64
LSC1YOR142W MMS22Q06164 1454 aa11.05□□□□□ -0.64
LSC1YOR142W SMC4Q12267 1418 aa11.03□□□□□ -0.64
LSC1YOR142W TY1B-JR2P47100 1755 aaKnown RBP11.02□□□□□ -0.65
LSC1YOR142W TY1B-ER2Q03619 1755 aa11.02□□□□□ -0.65
LSC1YOR142W TY1B-MR1Q04214 1755 aa11.02□□□□□ -0.65
LSC1YOR142W TY1B-MR2Q04670 1755 aaKnown RBP11.02□□□□□ -0.65
LSC1YOR142W TY1B-LR1Q12088 1755 aaKnown RBP11.02□□□□□ -0.65
LSC1YOR142W TY1B-NL1Q12112 1755 aa11.02□□□□□ -0.65
LSC1YOR142W TY1B-GR1Q12141 1755 aa11.02□□□□□ -0.65
LSC1YOR142W TY1B-BLQ12490 1755 aa11.02□□□□□ -0.65
LSC1YOR142W MET5P47169 1442 aa11□□□□□ -0.65
LSC1YOR142W SPP41P38904 1435 aa10.95□□□□□ -0.66
LSC1YOR142W NTE1Q04958 1679 aa10.95□□□□□ -0.66
LSC1YOR142W YRF1-1P0CX20 1796 aa10.94□□□□□ -0.66
LSC1YOR142W YRF1-5P0CX21 1796 aa10.94□□□□□ -0.66
LSC1YOR142W YRF1-8P0CX22 1796 aa10.94□□□□□ -0.66
LSC1YOR142W TRM732Q03496 1420 aa10.92□□□□□ -0.66
LSC1YOR142W VTH1P40438 1549 aa10.91□□□□□ -0.66
LSC1YOR142W VTH2P40890 1549 aa10.91□□□□□ -0.66
LSC1YOR142W RPO21P04050 1733 aaKnown RBP10.9□□□□□ -0.66
LSC1YOR142W TSC11P40061 1430 aa10.86□□□□□ -0.67
LSC1YOR142W MYO4P32492 1471 aa10.85□□□□□ -0.67
Retrieved 100 of 5,963 RNA–protein pairs in 8.6 ms