RNA–Protein interactions for RNA: YNL330C

RPD3, Transcript of Histone deacetylase, component of both the Rpd3S and Rpd3L complexes, yeastyeast

Gene RPD3, Length 1,302 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPD3YNL330C SGS1P35187 1447 aa14.75□□□□□ -0.05
RPD3YNL330C INO80P53115 1489 aa14.41□□□□□ -0.1
RPD3YNL330C SPA2P23201 1466 aaKnown RBP14.35□□□□□ -0.11
RPD3YNL330C SSN2P38931 1420 aa14.21□□□□□ -0.13
RPD3YNL330C TCB3Q03640 1545 aaKnown RBP14.08□□□□□ -0.16
RPD3YNL330C MTC1P47018 478 aaKnown RBP13.9□□□□□ -0.18
RPD3YNL330C DRS1P32892 752 aaKnown RBP13.86□□□□□ -0.19
RPD3YNL330C TY1B-DR4Q07793 1604 aa13.82□□□□□ -0.2
RPD3YNL330C HSL1P34244 1518 aa13.64□□□□□ -0.23
RPD3YNL330C SPT6P23615 1451 aaKnown RBP13.61□□□□□ -0.23
RPD3YNL330C MON2P48563 1636 aaPredicted RBP13.48□□□□□ -0.25
RPD3YNL330C HIR3P47171 1648 aa13.42□□□□□ -0.26
RPD3YNL330C XRN1P22147 1528 aaKnown RBP13.38□□□□□ -0.27
RPD3YNL330C SWR1Q05471 1514 aa13.38□□□□□ -0.27
RPD3YNL330C REV3P14284 1504 aa13.22□□□□□ -0.29
RPD3YNL330C THO2P53552 1597 aaKnown RBP13.16□□□□□ -0.3
RPD3YNL330C SIN3P22579 1536 aa13.16□□□□□ -0.3
RPD3YNL330C SKI3P17883 1432 aaKnown RBP13.09□□□□□ -0.31
RPD3YNL330C SSK2P53599 1579 aa13.08□□□□□ -0.32
RPD3YNL330C TAF2P23255 1407 aa13.03□□□□□ -0.32
RPD3YNL330C CHD1P32657 1468 aa12.98□□□□□ -0.33
RPD3YNL330C MYO2P19524 1574 aaKnown RBP12.96□□□□□ -0.33
RPD3YNL330C ESP1Q03018 1630 aa12.94□□□□□ -0.34
RPD3YNL330C MMS22Q06164 1454 aa12.91□□□□□ -0.34
RPD3YNL330C KOG1P38873 1557 aa12.88□□□□□ -0.35
RPD3YNL330C BUD4P47136 1447 aa12.86□□□□□ -0.35
RPD3YNL330C DNA2P38859 1522 aa12.85□□□□□ -0.35
RPD3YNL330C POL1P13382 1468 aa12.83□□□□□ -0.36
RPD3YNL330C YTA7P40340 1379 aa12.8□□□□□ -0.36
RPD3YNL330C ATG2P53855 1592 aa12.78□□□□□ -0.36
RPD3YNL330C ECM5Q03214 1411 aa12.77□□□□□ -0.37
RPD3YNL330C YPK9Q12697 1472 aa12.77□□□□□ -0.37
RPD3YNL330C STU1P38198 1513 aa12.77□□□□□ -0.37
RPD3YNL330C SAS10Q12136 610 aaPredicted RBP12.62□□□□□ -0.39
RPD3YNL330C PEP1P32319 1579 aa12.61□□□□□ -0.39
RPD3YNL330C YOR1P53049 1477 aa12.61□□□□□ -0.39
RPD3YNL330C RKR1Q04781 1562 aa12.6□□□□□ -0.39
RPD3YNL330C SCC2Q04002 1493 aa12.6□□□□□ -0.39
RPD3YNL330C BPT1P14772 1559 aa12.6□□□□□ -0.39
RPD3YNL330C MYO4P32492 1471 aa12.58□□□□□ -0.39
RPD3YNL330C MDS3P53094 1487 aa12.58□□□□□ -0.4
RPD3YNL330C RPO31P04051 1460 aa12.57□□□□□ -0.4
RPD3YNL330C TOP2P06786 1428 aaKnown RBP12.53□□□□□ -0.4
RPD3YNL330C TAF7Q05021 590 aa12.52□□□□□ -0.41
RPD3YNL330C SMC4Q12267 1418 aa12.52□□□□□ -0.41
RPD3YNL330C UFD4P33202 1483 aa12.47□□□□□ -0.41
RPD3YNL330C YCF1P39109 1515 aaKnown RBP12.45□□□□□ -0.42
RPD3YNL330C TRM732Q03496 1420 aa12.44□□□□□ -0.42
RPD3YNL330C IKI3Q06706 1349 aaKnown RBP12.43□□□□□ -0.42
RPD3YNL330C STH1P32597 1359 aa12.38□□□□□ -0.43
RPD3YNL330C SNQ2P32568 1501 aaKnown RBP12.38□□□□□ -0.43
RPD3YNL330C RSE1Q04693 1361 aaKnown RBP12.37□□□□□ -0.43
RPD3YNL330C TY2B-LR1P0C2J3 1770 aa12.34□□□□□ -0.43
RPD3YNL330C TY2B-FP0CX63 1770 aa12.34□□□□□ -0.43
RPD3YNL330C TY2B-GR2P0CX64 1770 aa12.34□□□□□ -0.43
RPD3YNL330C TY2B-CP25384 1770 aa12.34□□□□□ -0.43
RPD3YNL330C TY2B-DR2Q03494 1770 aa12.34□□□□□ -0.43
RPD3YNL330C TY1B-DR1Q03855 1755 aa12.34□□□□□ -0.43
RPD3YNL330C TY2B-DR3Q07791 1770 aaKnown RBP12.34□□□□□ -0.43
RPD3YNL330C TY2B-OR1Q12113 1770 aa12.34□□□□□ -0.43
RPD3YNL330C TY2B-DR1Q12472 1770 aa12.34□□□□□ -0.43
RPD3YNL330C TY2B-OR2Q12501 1770 aa12.34□□□□□ -0.43
RPD3YNL330C TY1B-DR3Q99231 1755 aa12.3□□□□□ -0.44
RPD3YNL330C MLP2P40457 1679 aa12.25□□□□□ -0.45
RPD3YNL330C NUP170P38181 1502 aa12.24□□□□□ -0.45
RPD3YNL330C TY2B-BQ12491 1770 aa12.24□□□□□ -0.45
RPD3YNL330C SPP41P38904 1435 aa12.23□□□□□ -0.45
RPD3YNL330C IFH1P39520 1085 aa12.23□□□□□ -0.45
RPD3YNL330C PDR15Q04182 1529 aaKnown RBP12.23□□□□□ -0.45
RPD3YNL330C GEA1P47102 1408 aaPredicted RBP12.22□□□□□ -0.45
RPD3YNL330C SSM4P40318 1319 aa12.18□□□□□ -0.46
RPD3YNL330C RQC2Q12532 1038 aaKnown RBP12.15□□□□□ -0.46
RPD3YNL330C TY1B-HO13535 1793 aa12.14□□□□□ -0.47
RPD3YNL330C TY1B-DR5P0C2I2 1755 aa12.14□□□□□ -0.47
RPD3YNL330C TY1B-DR6P0C2I3 1755 aa12.14□□□□□ -0.47
RPD3YNL330C TY1B-LR2P0C2I5 1755 aa12.14□□□□□ -0.47
RPD3YNL330C TY1B-LR3P0C2I6 1755 aaKnown RBP12.14□□□□□ -0.47
RPD3YNL330C TY1B-PR1P0C2I9 1755 aaKnown RBP12.14□□□□□ -0.47
RPD3YNL330C TY1B-PR2P0C2J0 1756 aa12.14□□□□□ -0.47
RPD3YNL330C TY1B-PR3P0C2J1 1755 aaKnown RBP12.14□□□□□ -0.47
RPD3YNL330C TY1B-JR1P47098 1755 aa12.14□□□□□ -0.47
RPD3YNL330C TY1B-ML2Q03434 1755 aaKnown RBP12.14□□□□□ -0.47
RPD3YNL330C TY1B-ER1Q03612 1755 aa12.14□□□□□ -0.47
RPD3YNL330C TY1B-ML1Q04711 1755 aaKnown RBP12.14□□□□□ -0.47
RPD3YNL330C TY1B-GR2Q12269 1755 aa12.14□□□□□ -0.47
RPD3YNL330C TY1B-OLQ12273 1755 aa12.14□□□□□ -0.47
RPD3YNL330C TY1B-PLQ12414 1755 aaKnown RBP12.14□□□□□ -0.47
RPD3YNL330C TSC11P40061 1430 aa12.14□□□□□ -0.47
RPD3YNL330C ULS1Q08562 1619 aa12.13□□□□□ -0.47
RPD3YNL330C TY1B-BRQ12193 1756 aa12.12□□□□□ -0.47
RPD3YNL330C TY1B-GR3Q12316 1755 aa12.12□□□□□ -0.47
RPD3YNL330C TY1B-ORQ92393 1755 aa12.12□□□□□ -0.47
RPD3YNL330C VTH1P40438 1549 aa12.12□□□□□ -0.47
RPD3YNL330C VTH2P40890 1549 aa12.12□□□□□ -0.47
RPD3YNL330C PAN1P32521 1480 aa12.11□□□□□ -0.47
RPD3YNL330C SNT2P53127 1403 aa12.07□□□□□ -0.48
RPD3YNL330C CDC25P04821 1589 aa12.07□□□□□ -0.48
RPD3YNL330C FAP1P53971 965 aa12.05□□□□□ -0.48
RPD3YNL330C TY3B-GQ99315 1547 aa12□□□□□ -0.49
RPD3YNL330C RTT106P40161 455 aa11.98□□□□□ -0.49
Retrieved 100 of 5,963 RNA–protein pairs in 15.2 ms