RNA–Protein interactions for RNA: YNL330C

RPD3, Transcript of Histone deacetylase, component of both the Rpd3S and Rpd3L complexes, yeastyeast

Gene RPD3, Length 1,302 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPD3YNL330C SGS1P35187 1447 aa14.75□□□□□ -0.05
RPD3YNL330C INO80P53115 1489 aa14.41□□□□□ -0.1
RPD3YNL330C SPA2P23201 1466 aaKnown RBP14.35□□□□□ -0.11
RPD3YNL330C SSN2P38931 1420 aa14.21□□□□□ -0.13
RPD3YNL330C TCB3Q03640 1545 aaKnown RBP14.08□□□□□ -0.16
RPD3YNL330C MTC1P47018 478 aaKnown RBP13.9□□□□□ -0.18
RPD3YNL330C DRS1P32892 752 aaKnown RBP13.86□□□□□ -0.19
RPD3YNL330C TY1B-DR4Q07793 1604 aa13.82□□□□□ -0.2
RPD3YNL330C HSL1P34244 1518 aa13.64□□□□□ -0.23
RPD3YNL330C SPT6P23615 1451 aaKnown RBP13.61□□□□□ -0.23
RPD3YNL330C MON2P48563 1636 aaPredicted RBP13.48□□□□□ -0.25
RPD3YNL330C HIR3P47171 1648 aa13.42□□□□□ -0.26
RPD3YNL330C XRN1P22147 1528 aaKnown RBP13.38□□□□□ -0.27
RPD3YNL330C SWR1Q05471 1514 aa13.38□□□□□ -0.27
RPD3YNL330C REV3P14284 1504 aa13.22□□□□□ -0.29
RPD3YNL330C THO2P53552 1597 aaKnown RBP13.16□□□□□ -0.3
RPD3YNL330C SIN3P22579 1536 aa13.16□□□□□ -0.3
RPD3YNL330C SKI3P17883 1432 aaKnown RBP13.09□□□□□ -0.31
RPD3YNL330C SSK2P53599 1579 aa13.08□□□□□ -0.32
RPD3YNL330C TAF2P23255 1407 aa13.03□□□□□ -0.32
RPD3YNL330C CHD1P32657 1468 aa12.98□□□□□ -0.33
RPD3YNL330C MYO2P19524 1574 aaKnown RBP12.96□□□□□ -0.33
RPD3YNL330C ESP1Q03018 1630 aa12.94□□□□□ -0.34
RPD3YNL330C MMS22Q06164 1454 aa12.91□□□□□ -0.34
RPD3YNL330C KOG1P38873 1557 aa12.88□□□□□ -0.35
RPD3YNL330C BUD4P47136 1447 aa12.86□□□□□ -0.35
RPD3YNL330C DNA2P38859 1522 aa12.85□□□□□ -0.35
RPD3YNL330C POL1P13382 1468 aa12.83□□□□□ -0.36
RPD3YNL330C YTA7P40340 1379 aa12.8□□□□□ -0.36
RPD3YNL330C ATG2P53855 1592 aa12.78□□□□□ -0.36
RPD3YNL330C ECM5Q03214 1411 aa12.77□□□□□ -0.37
RPD3YNL330C YPK9Q12697 1472 aa12.77□□□□□ -0.37
RPD3YNL330C STU1P38198 1513 aa12.77□□□□□ -0.37
RPD3YNL330C SAS10Q12136 610 aaPredicted RBP12.62□□□□□ -0.39
RPD3YNL330C PEP1P32319 1579 aa12.61□□□□□ -0.39
RPD3YNL330C YOR1P53049 1477 aa12.61□□□□□ -0.39
RPD3YNL330C RKR1Q04781 1562 aa12.6□□□□□ -0.39
RPD3YNL330C SCC2Q04002 1493 aa12.6□□□□□ -0.39
RPD3YNL330C BPT1P14772 1559 aa12.6□□□□□ -0.39
RPD3YNL330C MYO4P32492 1471 aa12.58□□□□□ -0.39
RPD3YNL330C MDS3P53094 1487 aa12.58□□□□□ -0.4
RPD3YNL330C RPO31P04051 1460 aa12.57□□□□□ -0.4
RPD3YNL330C TOP2P06786 1428 aaKnown RBP12.53□□□□□ -0.4
RPD3YNL330C TAF7Q05021 590 aa12.52□□□□□ -0.41
RPD3YNL330C SMC4Q12267 1418 aa12.52□□□□□ -0.41
RPD3YNL330C UFD4P33202 1483 aa12.47□□□□□ -0.41
RPD3YNL330C YCF1P39109 1515 aaKnown RBP12.45□□□□□ -0.42
RPD3YNL330C TRM732Q03496 1420 aa12.44□□□□□ -0.42
RPD3YNL330C IKI3Q06706 1349 aaKnown RBP12.43□□□□□ -0.42
RPD3YNL330C STH1P32597 1359 aa12.38□□□□□ -0.43
RPD3YNL330C SNQ2P32568 1501 aaKnown RBP12.38□□□□□ -0.43
RPD3YNL330C RSE1Q04693 1361 aaKnown RBP12.37□□□□□ -0.43
RPD3YNL330C TY2B-LR1P0C2J3 1770 aa12.34□□□□□ -0.43
RPD3YNL330C TY2B-FP0CX63 1770 aa12.34□□□□□ -0.43
RPD3YNL330C TY2B-GR2P0CX64 1770 aa12.34□□□□□ -0.43
RPD3YNL330C TY2B-CP25384 1770 aa12.34□□□□□ -0.43
RPD3YNL330C TY2B-DR2Q03494 1770 aa12.34□□□□□ -0.43
RPD3YNL330C TY1B-DR1Q03855 1755 aa12.34□□□□□ -0.43
RPD3YNL330C TY2B-DR3Q07791 1770 aaKnown RBP12.34□□□□□ -0.43
RPD3YNL330C TY2B-OR1Q12113 1770 aa12.34□□□□□ -0.43
RPD3YNL330C TY2B-DR1Q12472 1770 aa12.34□□□□□ -0.43
RPD3YNL330C TY2B-OR2Q12501 1770 aa12.34□□□□□ -0.43
RPD3YNL330C TY1B-DR3Q99231 1755 aa12.3□□□□□ -0.44
RPD3YNL330C MLP2P40457 1679 aa12.25□□□□□ -0.45
RPD3YNL330C NUP170P38181 1502 aa12.24□□□□□ -0.45
RPD3YNL330C TY2B-BQ12491 1770 aa12.24□□□□□ -0.45
RPD3YNL330C SPP41P38904 1435 aa12.23□□□□□ -0.45
RPD3YNL330C IFH1P39520 1085 aa12.23□□□□□ -0.45
RPD3YNL330C PDR15Q04182 1529 aaKnown RBP12.23□□□□□ -0.45
RPD3YNL330C GEA1P47102 1408 aaPredicted RBP12.22□□□□□ -0.45
RPD3YNL330C SSM4P40318 1319 aa12.18□□□□□ -0.46
RPD3YNL330C RQC2Q12532 1038 aaKnown RBP12.15□□□□□ -0.46
RPD3YNL330C TY1B-HO13535 1793 aa12.14□□□□□ -0.47
RPD3YNL330C TY1B-DR5P0C2I2 1755 aa12.14□□□□□ -0.47
RPD3YNL330C TY1B-DR6P0C2I3 1755 aa12.14□□□□□ -0.47
RPD3YNL330C TY1B-LR2P0C2I5 1755 aa12.14□□□□□ -0.47
RPD3YNL330C TY1B-LR3P0C2I6 1755 aaKnown RBP12.14□□□□□ -0.47
RPD3YNL330C TY1B-PR1P0C2I9 1755 aaKnown RBP12.14□□□□□ -0.47
RPD3YNL330C TY1B-PR2P0C2J0 1756 aa12.14□□□□□ -0.47
RPD3YNL330C TY1B-PR3P0C2J1 1755 aaKnown RBP12.14□□□□□ -0.47
RPD3YNL330C TY1B-JR1P47098 1755 aa12.14□□□□□ -0.47
RPD3YNL330C TY1B-ML2Q03434 1755 aaKnown RBP12.14□□□□□ -0.47
RPD3YNL330C TY1B-ER1Q03612 1755 aa12.14□□□□□ -0.47
RPD3YNL330C TY1B-ML1Q04711 1755 aaKnown RBP12.14□□□□□ -0.47
RPD3YNL330C TY1B-GR2Q12269 1755 aa12.14□□□□□ -0.47
RPD3YNL330C TY1B-OLQ12273 1755 aa12.14□□□□□ -0.47
RPD3YNL330C TY1B-PLQ12414 1755 aaKnown RBP12.14□□□□□ -0.47
RPD3YNL330C TSC11P40061 1430 aa12.14□□□□□ -0.47
RPD3YNL330C ULS1Q08562 1619 aa12.13□□□□□ -0.47
RPD3YNL330C TY1B-BRQ12193 1756 aa12.12□□□□□ -0.47
RPD3YNL330C TY1B-GR3Q12316 1755 aa12.12□□□□□ -0.47
RPD3YNL330C TY1B-ORQ92393 1755 aa12.12□□□□□ -0.47
RPD3YNL330C VTH1P40438 1549 aa12.12□□□□□ -0.47
RPD3YNL330C VTH2P40890 1549 aa12.12□□□□□ -0.47
RPD3YNL330C PAN1P32521 1480 aa12.11□□□□□ -0.47
RPD3YNL330C SNT2P53127 1403 aa12.07□□□□□ -0.48
RPD3YNL330C CDC25P04821 1589 aa12.07□□□□□ -0.48
RPD3YNL330C FAP1P53971 965 aa12.05□□□□□ -0.48
RPD3YNL330C TY3B-GQ99315 1547 aa12□□□□□ -0.49
RPD3YNL330C RTT106P40161 455 aa11.98□□□□□ -0.49
Retrieved 100 of 5,963 RNA–protein pairs in 7 ms