RNA–Protein interactions for RNA: YMR200W

ROT1, Transcript of Molecular chaperone involved in protein folding in ER, yeastyeast

Gene ROT1, Length 771 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ROT1YMR200W MTC1P47018 478 aaKnown RBP16.06■□□□□ 0.16
ROT1YMR200W DRS1P32892 752 aaKnown RBP15.27■□□□□ 0.04
ROT1YMR200W FAP1P53971 965 aa14.11□□□□□ -0.15
ROT1YMR200W PRI1P10363 409 aa13.38□□□□□ -0.27
ROT1YMR200W PRY3P47033 881 aa13.27□□□□□ -0.29
ROT1YMR200W DIP2Q12220 943 aaPredicted RBP13.27□□□□□ -0.29
ROT1YMR200W AAD16Q02895 342 aa13.24□□□□□ -0.29
ROT1YMR200W ISW2Q08773 1120 aa13.2□□□□□ -0.3
ROT1YMR200W RPG1P38249 964 aaKnown RBP13.09□□□□□ -0.31
ROT1YMR200W AVT3P36062 692 aa12.9□□□□□ -0.34
ROT1YMR200W BFR2Q06631 534 aaKnown RBP12.81□□□□□ -0.36
ROT1YMR200W RSE1Q04693 1361 aaKnown RBP12.74□□□□□ -0.37
ROT1YMR200W TSR3Q12094 313 aaKnown RBP12.68□□□□□ -0.38
ROT1YMR200W YCK3P39962 524 aa12.63□□□□□ -0.39
ROT1YMR200W HAA1Q12753 694 aaKnown RBP12.43□□□□□ -0.42
ROT1YMR200W RPL17AP05740 184 aaKnown RBP12.35□□□□□ -0.43
ROT1YMR200W RPL17BP46990 184 aaKnown RBP12.35□□□□□ -0.43
ROT1YMR200W REB1P21538 810 aa12.23□□□□□ -0.45
ROT1YMR200W MRPL32P25348 183 aa12.12□□□□□ -0.47
ROT1YMR200W SPT21P35209 758 aa11.87□□□□□ -0.51
ROT1YMR200W YKR023WP36119 530 aaKnown RBP11.67□□□□□ -0.54
ROT1YMR200W CDC27P38042 758 aa11.65□□□□□ -0.54
ROT1YMR200W YGL015CP33199 130 aa11.53□□□□□ -0.56
ROT1YMR200W RIM101P33400 625 aa11.49□□□□□ -0.57
ROT1YMR200W TFA1P36100 482 aa11.46□□□□□ -0.57
ROT1YMR200W HOP09932 586 aa11.43□□□□□ -0.58
ROT1YMR200W TFC8Q12308 588 aa11.41□□□□□ -0.58
ROT1YMR200W DCD1P06773 312 aa11.4□□□□□ -0.58
ROT1YMR200W MAP2P38174 421 aaKnown RBP11.23□□□□□ -0.61
ROT1YMR200W UBP10P53874 792 aaPredicted RBP11.22□□□□□ -0.61
ROT1YMR200W OXP1P28273 1286 aa11.14□□□□□ -0.63
ROT1YMR200W BCH2P36122 765 aa11.05□□□□□ -0.64
ROT1YMR200W SCY1P53009 804 aa11.04□□□□□ -0.64
ROT1YMR200W PTP3P40048 928 aa10.9□□□□□ -0.66
ROT1YMR200W YIL055CP40523 627 aaKnown RBP10.89□□□□□ -0.67
ROT1YMR200W SLX5P32828 619 aaKnown RBP10.86□□□□□ -0.67
ROT1YMR200W YAH1Q12184 172 aaKnown RBP10.83□□□□□ -0.68
ROT1YMR200W EPS1P40557 701 aa10.8□□□□□ -0.68
ROT1YMR200W RSM7P47150 247 aa10.76□□□□□ -0.69
ROT1YMR200W BDF1P35817 686 aa10.75□□□□□ -0.69
ROT1YMR200W TIF4632P39936 914 aaKnown RBP10.71□□□□□ -0.69
ROT1YMR200W TGL3P40308 642 aa10.67□□□□□ -0.7
ROT1YMR200W YLR271WQ06152 274 aa10.67□□□□□ -0.7
ROT1YMR200W AI2P03876 854 aa10.65□□□□□ -0.7
ROT1YMR200W BBC1P47068 1157 aa10.6□□□□□ -0.71
ROT1YMR200W SSP1P38871 571 aa10.58□□□□□ -0.72
ROT1YMR200W BUD31P25337 157 aaPredicted RBP10.48□□□□□ -0.73
ROT1YMR200W PSD2P53037 1138 aaKnown RBP10.48□□□□□ -0.73
ROT1YMR200W ARP8Q12386 881 aaKnown RBP RIP-Chip data10.44□□□□□ -0.74not detected
ROT1YMR200W CST9Q06032 482 aa10.33□□□□□ -0.76
ROT1YMR200W NSR1P27476 414 aaKnown RBP RIP-Chip data10.31□□□□□ -0.76not detected
ROT1YMR200W MRM1P25270 412 aa10.3□□□□□ -0.76
ROT1YMR200W MST1P07236 462 aa10.29□□□□□ -0.76
ROT1YMR200W MGA2P40578 1113 aa10.28□□□□□ -0.76
ROT1YMR200W YOR238WQ08634 303 aa10.26□□□□□ -0.77
ROT1YMR200W UBP9P39967 754 aa10.23□□□□□ -0.77
ROT1YMR200W YAP5P40574 245 aa10.23□□□□□ -0.77
ROT1YMR200W YBL029C-AQ3E756 94 aa10.11□□□□□ -0.79
ROT1YMR200W PIB1Q06651 286 aa10.1□□□□□ -0.79
ROT1YMR200W RCR1P38212 213 aa10.07□□□□□ -0.8
ROT1YMR200W VPS29P38759 282 aa10.07□□□□□ -0.8
ROT1YMR200W RTG3P38165 486 aa10.06□□□□□ -0.8
ROT1YMR200W YMR1P47147 688 aaKnown RBP RIP-Chip data10□□□□□ -0.81not detected
ROT1YMR200W VNX1P42839 908 aa9.99□□□□□ -0.81
ROT1YMR200W WSC3Q12215 556 aa9.99□□□□□ -0.81
ROT1YMR200W SIS1P25294 352 aaKnown RBP9.98□□□□□ -0.81
ROT1YMR200W GTT3P39996 337 aa9.98□□□□□ -0.81
ROT1YMR200W DBP1P24784 617 aaKnown RBP9.97□□□□□ -0.81
ROT1YMR200W STS1P38637 319 aa9.97□□□□□ -0.81
ROT1YMR200W YFR006WP43590 535 aa9.97□□□□□ -0.81
ROT1YMR200W SPP1Q03012 353 aa9.89□□□□□ -0.83
ROT1YMR200W VMA1P17255 1071 aaKnown RBP9.84□□□□□ -0.83
ROT1YMR200W TIF11P38912 153 aaKnown RBP9.83□□□□□ -0.84
ROT1YMR200W RAM2P29703 316 aa9.82□□□□□ -0.84
ROT1YMR200W YOL036WQ08206 761 aa9.8□□□□□ -0.84
ROT1YMR200W SET4P42948 560 aa9.77□□□□□ -0.85
ROT1YMR200W SAM3Q08986 587 aa9.76□□□□□ -0.85
ROT1YMR200W MSB4Q12317 492 aa9.75□□□□□ -0.85
ROT1YMR200W ULI1P43604 169 aa9.73□□□□□ -0.85
ROT1YMR200W IOC2Q12072 812 aa9.72□□□□□ -0.85
ROT1YMR200W MAK11P20484 414 aaKnown RBP9.71□□□□□ -0.86
ROT1YMR200W LDB19Q12502 818 aa9.69□□□□□ -0.86
ROT1YMR200W FKH1P40466 484 aa9.67□□□□□ -0.86
ROT1YMR200W EAP1P36041 632 aaKnown RBP9.66□□□□□ -0.86
ROT1YMR200W TRP5P00931 707 aaKnown RBP9.65□□□□□ -0.86
ROT1YMR200W EDS1P38073 919 aa9.64□□□□□ -0.87
ROT1YMR200W AIR2Q12476 344 aaKnown RBP9.64□□□□□ -0.87
ROT1YMR200W MIF2P35201 549 aa9.62□□□□□ -0.87
ROT1YMR200W GYP5Q12344 894 aa9.62□□□□□ -0.87
ROT1YMR200W COQ8P27697 501 aa9.59□□□□□ -0.87
ROT1YMR200W DCW1P36091 449 aa9.56□□□□□ -0.88
ROT1YMR200W RTG1P32607 177 aa9.55□□□□□ -0.88
ROT1YMR200W PTC3P34221 468 aaKnown RBP9.55□□□□□ -0.88
ROT1YMR200W ABP1P15891 592 aaKnown RBP9.54□□□□□ -0.88
ROT1YMR200W HTA1P04911 132 aaKnown RBP9.52□□□□□ -0.89
ROT1YMR200W HTA2P04912 132 aa9.52□□□□□ -0.89
ROT1YMR200W YNL035CP53962 389 aaKnown RBP9.52□□□□□ -0.89
ROT1YMR200W GRE2Q12068 342 aaKnown RBP9.52□□□□□ -0.89
ROT1YMR200W DAN4P47179 1161 aa9.47□□□□□ -0.89
ROT1YMR200W ATH1P48016 1211 aa9.47□□□□□ -0.89
Retrieved 100 of 5,963 RNA–protein pairs in 7 ms