RNA–Protein interactions for RNA: YMR075W

RCO1, Transcript of Essential component of the Rpd3S histone deacetylase complex, yeast

Gene RCO1, Length 2,055 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RCO1	YMR075W	FAP1	P53971	965 aa		7.58	□□□□□ -1.2
RCO1	YMR075W	PRY3	P47033	881 aa		7.21	□□□□□ -1.26
RCO1	YMR075W	MTC1	P47018	478 aa	Known RBP	7.19	□□□□□ -1.26
RCO1	YMR075W	YCK3	P39962	524 aa		6.77	□□□□□ -1.33
RCO1	YMR075W	AAD16	Q02895	342 aa		6.69	□□□□□ -1.34
RCO1	YMR075W	HAA1	Q12753	694 aa	Known RBP	6.69	□□□□□ -1.34
RCO1	YMR075W	PRI1	P10363	409 aa		6.54	□□□□□ -1.36
RCO1	YMR075W	ISW2	Q08773	1120 aa		6.27	□□□□□ -1.41
RCO1	YMR075W	RPG1	P38249	964 aa	Known RBP	6.13	□□□□□ -1.43
RCO1	YMR075W	TSR3	Q12094	313 aa	Known RBP	6.12	□□□□□ -1.43
RCO1	YMR075W	BUD31	P25337	157 aa	Predicted RBP	6.11	□□□□□ -1.43
RCO1	YMR075W	YGL015C	P33199	130 aa		6.04	□□□□□ -1.44
RCO1	YMR075W	MRPL32	P25348	183 aa		6.03	□□□□□ -1.44
RCO1	YMR075W	DRS1	P32892	752 aa	Known RBP	5.84	□□□□□ -1.47
RCO1	YMR075W	SIS1	P25294	352 aa	Known RBP	5.66	□□□□□ -1.5
RCO1	YMR075W	RSE1	Q04693	1361 aa	Known RBP	5.58	□□□□□ -1.52
RCO1	YMR075W	REB1	P21538	810 aa		5.54	□□□□□ -1.52
RCO1	YMR075W	UBP10	P53874	792 aa	Predicted RBP	5.51	□□□□□ -1.53
RCO1	YMR075W	UBP9	P39967	754 aa		5.51	□□□□□ -1.53
RCO1	YMR075W	DIP2	Q12220	943 aa	Predicted RBP	5.43	□□□□□ -1.54
RCO1	YMR075W	RPL17A	P05740	184 aa	Known RBP	5.41	□□□□□ -1.54
RCO1	YMR075W	RPL17B	P46990	184 aa	Known RBP	5.41	□□□□□ -1.54
RCO1	YMR075W	CDC27	P38042	758 aa		5.37	□□□□□ -1.55
RCO1	YMR075W	TIF4632	P39936	914 aa	Known RBP	5.37	□□□□□ -1.55
RCO1	YMR075W	MAP2	P38174	421 aa	Known RBP	5.36	□□□□□ -1.55
RCO1	YMR075W	TGL3	P40308	642 aa		5.28	□□□□□ -1.56
RCO1	YMR075W	SLX5	P32828	619 aa	Known RBP	5.19	□□□□□ -1.58
RCO1	YMR075W	YKR023W	P36119	530 aa	Known RBP	5.14	□□□□□ -1.59
RCO1	YMR075W	SCY1	P53009	804 aa		5.13	□□□□□ -1.59
RCO1	YMR075W	TFC8	Q12308	588 aa		5.09	□□□□□ -1.59
RCO1	YMR075W	HO	P09932	586 aa		5.06	□□□□□ -1.6
RCO1	YMR075W	DCD1	P06773	312 aa		5	□□□□□ -1.61
RCO1	YMR075W	SPT21	P35209	758 aa		5	□□□□□ -1.61
RCO1	YMR075W	YJL171C	P46992	396 aa		4.98	□□□□□ -1.61
RCO1	YMR075W	YBL029C-A	Q3E756	94 aa		4.93	□□□□□ -1.62
RCO1	YMR075W	AVT3	P36062	692 aa		4.92	□□□□□ -1.62
RCO1	YMR075W	YOR238W	Q08634	303 aa		4.92	□□□□□ -1.62
RCO1	YMR075W	SPP1	Q03012	353 aa		4.89	□□□□□ -1.63
RCO1	YMR075W	MST1	P07236	462 aa		4.88	□□□□□ -1.63
RCO1	YMR075W	BCH2	P36122	765 aa		4.87	□□□□□ -1.63
RCO1	YMR075W	VNX1	P42839	908 aa		4.87	□□□□□ -1.63
RCO1	YMR075W	AIR2	Q12476	344 aa	Known RBP	4.81	□□□□□ -1.64
RCO1	YMR075W	FKH1	P40466	484 aa		4.79	□□□□□ -1.64
RCO1	YMR075W	RGA2	Q06407	1009 aa		4.79	□□□□□ -1.64
RCO1	YMR075W	BMT6	Q12291	365 aa		4.79	□□□□□ -1.64
RCO1	YMR075W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	4.78	□□□□□ -1.64	not detected
RCO1	YMR075W	TIF11	P38912	153 aa	Known RBP	4.77	□□□□□ -1.65
RCO1	YMR075W	WSC3	Q12215	556 aa		4.77	□□□□□ -1.65
RCO1	YMR075W	GTT3	P39996	337 aa		4.75	□□□□□ -1.65
RCO1	YMR075W	YAP5	P40574	245 aa		4.75	□□□□□ -1.65
RCO1	YMR075W	EPS1	P40557	701 aa		4.72	□□□□□ -1.65
RCO1	YMR075W	BDF1	P35817	686 aa		4.7	□□□□□ -1.66
RCO1	YMR075W	RIM101	P33400	625 aa		4.68	□□□□□ -1.66
RCO1	YMR075W	LDB19	Q12502	818 aa		4.66	□□□□□ -1.66
RCO1	YMR075W	ULI1	P43604	169 aa		4.65	□□□□□ -1.66
RCO1	YMR075W	BBC1	P47068	1157 aa		4.62	□□□□□ -1.67
RCO1	YMR075W	EAP1	P36041	632 aa	Known RBP	4.6	□□□□□ -1.67
RCO1	YMR075W	YIL055C	P40523	627 aa	Known RBP	4.57	□□□□□ -1.68
RCO1	YMR075W	IOC2	Q12072	812 aa		4.57	□□□□□ -1.68
RCO1	YMR075W	MSB4	Q12317	492 aa		4.57	□□□□□ -1.68
RCO1	YMR075W	PTP3	P40048	928 aa		4.56	□□□□□ -1.68
RCO1	YMR075W	TFG1	P41895	735 aa	Predicted RBP	4.55	□□□□□ -1.68
RCO1	YMR075W	NCR1	Q12200	1170 aa		4.54	□□□□□ -1.68
RCO1	YMR075W	RTG1	P32607	177 aa		4.53	□□□□□ -1.68
RCO1	YMR075W	BCK2	P33306	851 aa		4.53	□□□□□ -1.68
RCO1	YMR075W	SEC61	P32915	480 aa		4.49	□□□□□ -1.69
RCO1	YMR075W	YNL035C	P53962	389 aa	Known RBP	4.48	□□□□□ -1.69
RCO1	YMR075W	BFR2	Q06631	534 aa	Known RBP	4.47	□□□□□ -1.69
RCO1	YMR075W	AI2	P03876	854 aa		4.44	□□□□□ -1.7
RCO1	YMR075W	CHL1	P22516	861 aa	Predicted RBP	4.44	□□□□□ -1.7
RCO1	YMR075W	RSM7	P47150	247 aa		4.43	□□□□□ -1.7
RCO1	YMR075W	OXP1	P28273	1286 aa		4.42	□□□□□ -1.7
RCO1	YMR075W	TRP5	P00931	707 aa	Known RBP	4.42	□□□□□ -1.7
RCO1	YMR075W	SET4	P42948	560 aa		4.39	□□□□□ -1.71
RCO1	YMR075W	YOL036W	Q08206	761 aa		4.39	□□□□□ -1.71
RCO1	YMR075W	PIB1	Q06651	286 aa		4.38	□□□□□ -1.71
RCO1	YMR075W	SAP30	P38429	201 aa		4.37	□□□□□ -1.71
RCO1	YMR075W	XDJ1	P39102	459 aa		4.37	□□□□□ -1.71
RCO1	YMR075W	PRE3	P38624	215 aa		4.36	□□□□□ -1.71
RCO1	YMR075W	JIP4	Q03361	876 aa		4.35	□□□□□ -1.71
RCO1	YMR075W	YDL129W	Q07555	291 aa		4.35	□□□□□ -1.71
RCO1	YMR075W	RGA1	P39083	1007 aa		4.34	□□□□□ -1.71
RCO1	YMR075W	ABP1	P15891	592 aa	Known RBP	4.33	□□□□□ -1.72
RCO1	YMR075W	DPS1	P04802	557 aa	Known RBP	4.31	□□□□□ -1.72
RCO1	YMR075W	VRP1	P37370	817 aa		4.29	□□□□□ -1.72
RCO1	YMR075W	YAH1	Q12184	172 aa	Known RBP	4.26	□□□□□ -1.73
RCO1	YMR075W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	4.25	□□□□□ -1.73	not detected
RCO1	YMR075W	SAM3	Q08986	587 aa		4.25	□□□□□ -1.73
RCO1	YMR075W	DAN4	P47179	1161 aa		4.23	□□□□□ -1.73
RCO1	YMR075W	ELP4	Q02884	456 aa	Known RBP	4.23	□□□□□ -1.73
RCO1	YMR075W	HTA1	P04911	132 aa	Known RBP	4.22	□□□□□ -1.73
RCO1	YMR075W	HTA2	P04912	132 aa		4.22	□□□□□ -1.73
RCO1	YMR075W	VMA1	P17255	1071 aa	Known RBP	4.22	□□□□□ -1.73
RCO1	YMR075W	MRM1	P25270	412 aa		4.22	□□□□□ -1.73
RCO1	YMR075W	DBP1	P24784	617 aa	Known RBP	4.2	□□□□□ -1.74
RCO1	YMR075W	PTC4	P38089	393 aa		4.2	□□□□□ -1.74
RCO1	YMR075W	GYP5	Q12344	894 aa		4.18	□□□□□ -1.74
RCO1	YMR075W	PSD2	P53037	1138 aa	Known RBP	4.15	□□□□□ -1.74
RCO1	YMR075W	YEL023C	P39992	682 aa		4.15	□□□□□ -1.75
RCO1	YMR075W	DCW1	P36091	449 aa		4.14	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 14.1 ms