RNA–Protein interactions for RNA: YMR048W

CSM3, Transcript of Replication fork associated factor, yeastyeast

Gene CSM3, Length 954 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CSM3YMR048W MTC1P47018 478 aaKnown RBP16.92■□□□□ 0.3
CSM3YMR048W DRS1P32892 752 aaKnown RBP16.01■□□□□ 0.15
CSM3YMR048W FAP1P53971 965 aa14.92□□□□□ -0.02
CSM3YMR048W PRI1P10363 409 aa14.12□□□□□ -0.15
CSM3YMR048W AAD16Q02895 342 aa14.02□□□□□ -0.17
CSM3YMR048W ISW2Q08773 1120 aa14□□□□□ -0.17
CSM3YMR048W PRY3P47033 881 aa13.99□□□□□ -0.17
CSM3YMR048W DIP2Q12220 943 aaPredicted RBP13.96□□□□□ -0.17
CSM3YMR048W RPG1P38249 964 aaKnown RBP13.79□□□□□ -0.2
CSM3YMR048W AVT3P36062 692 aa13.52□□□□□ -0.25
CSM3YMR048W RSE1Q04693 1361 aaKnown RBP13.45□□□□□ -0.26
CSM3YMR048W BFR2Q06631 534 aaKnown RBP13.43□□□□□ -0.26
CSM3YMR048W TSR3Q12094 313 aaKnown RBP13.32□□□□□ -0.28
CSM3YMR048W HAA1Q12753 694 aaKnown RBP13.22□□□□□ -0.29
CSM3YMR048W YCK3P39962 524 aa13.18□□□□□ -0.3
CSM3YMR048W RPL17AP05740 184 aaKnown RBP12.98□□□□□ -0.33
CSM3YMR048W RPL17BP46990 184 aaKnown RBP12.98□□□□□ -0.33
CSM3YMR048W REB1P21538 810 aa12.93□□□□□ -0.34
CSM3YMR048W MRPL32P25348 183 aa12.86□□□□□ -0.35
CSM3YMR048W SPT21P35209 758 aa12.43□□□□□ -0.42
CSM3YMR048W YGL015CP33199 130 aa12.29□□□□□ -0.44
CSM3YMR048W YKR023WP36119 530 aaKnown RBP12.24□□□□□ -0.45
CSM3YMR048W CDC27P38042 758 aa12.19□□□□□ -0.46
CSM3YMR048W RIM101P33400 625 aa12.09□□□□□ -0.47
CSM3YMR048W TFA1P36100 482 aa12.02□□□□□ -0.49
CSM3YMR048W TFC8Q12308 588 aa12.01□□□□□ -0.49
CSM3YMR048W HOP09932 586 aa11.96□□□□□ -0.49
CSM3YMR048W UBP10P53874 792 aaPredicted RBP11.92□□□□□ -0.5
CSM3YMR048W DCD1P06773 312 aa11.86□□□□□ -0.51
CSM3YMR048W MAP2P38174 421 aaKnown RBP11.8□□□□□ -0.52
CSM3YMR048W OXP1P28273 1286 aa11.65□□□□□ -0.54
CSM3YMR048W BCH2P36122 765 aa11.61□□□□□ -0.55
CSM3YMR048W SCY1P53009 804 aa11.61□□□□□ -0.55
CSM3YMR048W YIL055CP40523 627 aaKnown RBP11.53□□□□□ -0.56
CSM3YMR048W SLX5P32828 619 aaKnown RBP11.5□□□□□ -0.57
CSM3YMR048W PTP3P40048 928 aa11.47□□□□□ -0.57
CSM3YMR048W TIF4632P39936 914 aaKnown RBP11.44□□□□□ -0.58
CSM3YMR048W TGL3P40308 642 aa11.37□□□□□ -0.59
CSM3YMR048W EPS1P40557 701 aa11.35□□□□□ -0.59
CSM3YMR048W RSM7P47150 247 aa11.35□□□□□ -0.59
CSM3YMR048W YAH1Q12184 172 aaKnown RBP11.32□□□□□ -0.6
CSM3YMR048W BDF1P35817 686 aa11.3□□□□□ -0.6
CSM3YMR048W BBC1P47068 1157 aa11.24□□□□□ -0.61
CSM3YMR048W AI2P03876 854 aa11.21□□□□□ -0.61
CSM3YMR048W YLR271WQ06152 274 aa11.17□□□□□ -0.62
CSM3YMR048W BUD31P25337 157 aaPredicted RBP11.13□□□□□ -0.63
CSM3YMR048W SSP1P38871 571 aa11.13□□□□□ -0.63
CSM3YMR048W ARP8Q12386 881 aaKnown RBP RIP-Chip data11.07□□□□□ -0.64not detected
CSM3YMR048W PSD2P53037 1138 aaKnown RBP10.99□□□□□ -0.65
CSM3YMR048W NSR1P27476 414 aaKnown RBP RIP-Chip data10.97□□□□□ -0.65not detected
CSM3YMR048W UBP9P39967 754 aa10.97□□□□□ -0.65
CSM3YMR048W MST1P07236 462 aa10.92□□□□□ -0.66
CSM3YMR048W YOR238WQ08634 303 aa10.9□□□□□ -0.66
CSM3YMR048W YAP5P40574 245 aa10.86□□□□□ -0.67
CSM3YMR048W MGA2P40578 1113 aa10.84□□□□□ -0.67
CSM3YMR048W MRM1P25270 412 aa10.8□□□□□ -0.68
CSM3YMR048W CST9Q06032 482 aa10.76□□□□□ -0.69
CSM3YMR048W RTG3P38165 486 aa10.64□□□□□ -0.71
CSM3YMR048W YBL029C-AQ3E756 94 aa10.64□□□□□ -0.71
CSM3YMR048W SIS1P25294 352 aaKnown RBP10.62□□□□□ -0.71
CSM3YMR048W GTT3P39996 337 aa10.61□□□□□ -0.71
CSM3YMR048W VNX1P42839 908 aa10.59□□□□□ -0.71
CSM3YMR048W VPS29P38759 282 aa10.57□□□□□ -0.72
CSM3YMR048W YMR1P47147 688 aaKnown RBP RIP-Chip data10.57□□□□□ -0.72not detected
CSM3YMR048W PIB1Q06651 286 aa10.54□□□□□ -0.72
CSM3YMR048W WSC3Q12215 556 aa10.52□□□□□ -0.73
CSM3YMR048W DBP1P24784 617 aaKnown RBP10.5□□□□□ -0.73
CSM3YMR048W SPP1Q03012 353 aa10.49□□□□□ -0.73
CSM3YMR048W RCR1P38212 213 aa10.46□□□□□ -0.73
CSM3YMR048W TIF11P38912 153 aaKnown RBP10.44□□□□□ -0.74
CSM3YMR048W STS1P38637 319 aa10.43□□□□□ -0.74
CSM3YMR048W YFR006WP43590 535 aa10.42□□□□□ -0.74
CSM3YMR048W MSB4Q12317 492 aa10.4□□□□□ -0.74
CSM3YMR048W VMA1P17255 1071 aaKnown RBP10.37□□□□□ -0.75
CSM3YMR048W EAP1P36041 632 aaKnown RBP10.34□□□□□ -0.75
CSM3YMR048W SAM3Q08986 587 aa10.34□□□□□ -0.75
CSM3YMR048W YOL036WQ08206 761 aa10.33□□□□□ -0.76
CSM3YMR048W ULI1P43604 169 aa10.32□□□□□ -0.76
CSM3YMR048W SET4P42948 560 aa10.29□□□□□ -0.76
CSM3YMR048W IOC2Q12072 812 aa10.28□□□□□ -0.76
CSM3YMR048W RAM2P29703 316 aa10.27□□□□□ -0.77
CSM3YMR048W MAK11P20484 414 aaKnown RBP10.26□□□□□ -0.77
CSM3YMR048W LDB19Q12502 818 aa10.24□□□□□ -0.77
CSM3YMR048W FKH1P40466 484 aa10.23□□□□□ -0.77
CSM3YMR048W ABP1P15891 592 aaKnown RBP10.22□□□□□ -0.77
CSM3YMR048W AIR2Q12476 344 aaKnown RBP10.2□□□□□ -0.78
CSM3YMR048W TRP5P00931 707 aaKnown RBP10.19□□□□□ -0.78
CSM3YMR048W GYP5Q12344 894 aa10.18□□□□□ -0.78
CSM3YMR048W MIF2P35201 549 aa10.13□□□□□ -0.79
CSM3YMR048W YJL171CP46992 396 aa10.13□□□□□ -0.79
CSM3YMR048W YNL035CP53962 389 aaKnown RBP10.12□□□□□ -0.79
CSM3YMR048W RTG1P32607 177 aa10.11□□□□□ -0.79
CSM3YMR048W HTA1P04911 132 aaKnown RBP10.1□□□□□ -0.79
CSM3YMR048W HTA2P04912 132 aa10.1□□□□□ -0.79
CSM3YMR048W SEC61P32915 480 aa10.09□□□□□ -0.79
CSM3YMR048W COQ8P27697 501 aa10.08□□□□□ -0.8
CSM3YMR048W JIP4Q03361 876 aa10.08□□□□□ -0.8
CSM3YMR048W GRE2Q12068 342 aaKnown RBP10.08□□□□□ -0.8
CSM3YMR048W DCW1P36091 449 aa10.07□□□□□ -0.8
CSM3YMR048W EDS1P38073 919 aa10.07□□□□□ -0.8
Retrieved 100 of 5,963 RNA–protein pairs in 14.3 ms