RNA–Protein interactions for RNA: YLR055C

SPT8, Transcript of Subunit of the SAGA transcriptional regulatory complex, yeastyeast

Gene SPT8, Length 1,809 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SPT8YLR055C MON2P48563 1636 aaPredicted RBP19.99■□□□□ 0.79
SPT8YLR055C INO80P53115 1489 aa19.95■□□□□ 0.78
SPT8YLR055C SGS1P35187 1447 aa19.81■□□□□ 0.76
SPT8YLR055C TCB3Q03640 1545 aaKnown RBP19.61■□□□□ 0.73
SPT8YLR055C TY1B-DR4Q07793 1604 aa19.48■□□□□ 0.71
SPT8YLR055C SWR1Q05471 1514 aa19.32■□□□□ 0.68
SPT8YLR055C DNA2P38859 1522 aa19.03■□□□□ 0.64
SPT8YLR055C HSL1P34244 1518 aa18.97■□□□□ 0.63
SPT8YLR055C SPT6P23615 1451 aaKnown RBP18.93■□□□□ 0.62
SPT8YLR055C KOG1P38873 1557 aa18.87■□□□□ 0.61
SPT8YLR055C SPA2P23201 1466 aaKnown RBP18.81■□□□□ 0.6
SPT8YLR055C HIR3P47171 1648 aa18.59■□□□□ 0.57
SPT8YLR055C SSN2P38931 1420 aa18.59■□□□□ 0.57
SPT8YLR055C XRN1P22147 1528 aaKnown RBP18.36■□□□□ 0.53
SPT8YLR055C ECM5Q03214 1411 aa18.21■□□□□ 0.51
SPT8YLR055C THO2P53552 1597 aaKnown RBP18.19■□□□□ 0.5
SPT8YLR055C BUD4P47136 1447 aa18.17■□□□□ 0.5
SPT8YLR055C REV3P14284 1504 aa18.07■□□□□ 0.48
SPT8YLR055C DRS1P32892 752 aaKnown RBP18.02■□□□□ 0.48
SPT8YLR055C RSE1Q04693 1361 aaKnown RBP17.94■□□□□ 0.46
SPT8YLR055C MDS3P53094 1487 aa17.92■□□□□ 0.46
SPT8YLR055C SIN3P22579 1536 aa17.89■□□□□ 0.45
SPT8YLR055C ATG2P53855 1592 aa17.87■□□□□ 0.45
SPT8YLR055C TAF2P23255 1407 aa17.86■□□□□ 0.45
SPT8YLR055C PEP1P32319 1579 aa17.82■□□□□ 0.44
SPT8YLR055C SSK2P53599 1579 aa17.78■□□□□ 0.44
SPT8YLR055C SKI3P17883 1432 aaKnown RBP17.7■□□□□ 0.42
SPT8YLR055C ESP1Q03018 1630 aa17.68■□□□□ 0.42
SPT8YLR055C MYO2P19524 1574 aaKnown RBP17.52■□□□□ 0.4
SPT8YLR055C BPT1P14772 1559 aa17.42■□□□□ 0.38
SPT8YLR055C YPK9Q12697 1472 aa17.4■□□□□ 0.38
SPT8YLR055C MTC1P47018 478 aaKnown RBP17.4■□□□□ 0.38
SPT8YLR055C SCC2Q04002 1493 aa17.33■□□□□ 0.36
SPT8YLR055C UFD4P33202 1483 aa17.31■□□□□ 0.36
SPT8YLR055C RPO31P04051 1460 aa17.22■□□□□ 0.35
SPT8YLR055C YCF1P39109 1515 aaKnown RBP17.13■□□□□ 0.33
SPT8YLR055C TY2B-LR1P0C2J3 1770 aa17.11■□□□□ 0.33
SPT8YLR055C TY2B-FP0CX63 1770 aa17.11■□□□□ 0.33
SPT8YLR055C TY2B-GR2P0CX64 1770 aa17.11■□□□□ 0.33
SPT8YLR055C TY2B-CP25384 1770 aa17.11■□□□□ 0.33
SPT8YLR055C TY2B-DR2Q03494 1770 aa17.11■□□□□ 0.33
SPT8YLR055C TY1B-DR1Q03855 1755 aa17.11■□□□□ 0.33
SPT8YLR055C TY2B-DR3Q07791 1770 aaKnown RBP17.11■□□□□ 0.33
SPT8YLR055C TY2B-OR1Q12113 1770 aa17.11■□□□□ 0.33
SPT8YLR055C TY2B-DR1Q12472 1770 aa17.11■□□□□ 0.33
SPT8YLR055C TY2B-OR2Q12501 1770 aa17.11■□□□□ 0.33
SPT8YLR055C POL1P13382 1468 aa17.09■□□□□ 0.33
SPT8YLR055C RKR1Q04781 1562 aa17.06■□□□□ 0.32
SPT8YLR055C TOP2P06786 1428 aaKnown RBP17.03■□□□□ 0.32
SPT8YLR055C STU1P38198 1513 aa17■□□□□ 0.31
SPT8YLR055C CDC25P04821 1589 aa16.95■□□□□ 0.3
SPT8YLR055C TY1B-DR3Q99231 1755 aa16.94■□□□□ 0.3
SPT8YLR055C RQC2Q12532 1038 aaKnown RBP16.94■□□□□ 0.3
SPT8YLR055C TY1B-BRQ12193 1756 aa16.94■□□□□ 0.3
SPT8YLR055C TY1B-GR3Q12316 1755 aa16.94■□□□□ 0.3
SPT8YLR055C TY1B-ORQ92393 1755 aa16.94■□□□□ 0.3
SPT8YLR055C TY2B-BQ12491 1770 aa16.93■□□□□ 0.3
SPT8YLR055C CHD1P32657 1468 aa16.92■□□□□ 0.3
SPT8YLR055C YOR1P53049 1477 aa16.91■□□□□ 0.3
SPT8YLR055C TY1B-HO13535 1793 aa16.86■□□□□ 0.29
SPT8YLR055C TY1B-DR5P0C2I2 1755 aa16.86■□□□□ 0.29
SPT8YLR055C TY1B-DR6P0C2I3 1755 aa16.86■□□□□ 0.29
SPT8YLR055C TY1B-LR2P0C2I5 1755 aa16.86■□□□□ 0.29
SPT8YLR055C TY1B-LR3P0C2I6 1755 aaKnown RBP16.86■□□□□ 0.29
SPT8YLR055C TY1B-PR1P0C2I9 1755 aaKnown RBP16.86■□□□□ 0.29
SPT8YLR055C TY1B-PR2P0C2J0 1756 aa16.86■□□□□ 0.29
SPT8YLR055C TY1B-PR3P0C2J1 1755 aaKnown RBP16.86■□□□□ 0.29
SPT8YLR055C TY1B-JR1P47098 1755 aa16.86■□□□□ 0.29
SPT8YLR055C TY1B-ML2Q03434 1755 aaKnown RBP16.86■□□□□ 0.29
SPT8YLR055C TY1B-ER1Q03612 1755 aa16.86■□□□□ 0.29
SPT8YLR055C TY1B-ML1Q04711 1755 aaKnown RBP16.86■□□□□ 0.29
SPT8YLR055C TY1B-GR2Q12269 1755 aa16.86■□□□□ 0.29
SPT8YLR055C TY1B-OLQ12273 1755 aa16.86■□□□□ 0.29
SPT8YLR055C TY1B-PLQ12414 1755 aaKnown RBP16.86■□□□□ 0.29
SPT8YLR055C SMC4Q12267 1418 aa16.85■□□□□ 0.29
SPT8YLR055C ESC1Q03661 1658 aaKnown RBP16.85■□□□□ 0.29
SPT8YLR055C PAN1P32521 1480 aa16.81■□□□□ 0.28
SPT8YLR055C MMS22Q06164 1454 aa16.78■□□□□ 0.28
SPT8YLR055C DNF1P32660 1571 aa16.75■□□□□ 0.27
SPT8YLR055C YTA7P40340 1379 aa16.72■□□□□ 0.27
SPT8YLR055C SPP41P38904 1435 aa16.68■□□□□ 0.26
SPT8YLR055C RPA190P10964 1664 aaKnown RBP16.68■□□□□ 0.26
SPT8YLR055C MYO4P32492 1471 aa16.63■□□□□ 0.25
SPT8YLR055C TRM732Q03496 1420 aa16.59■□□□□ 0.25
SPT8YLR055C MET5P47169 1442 aa16.56■□□□□ 0.24
SPT8YLR055C TY1B-JR2P47100 1755 aaKnown RBP16.55■□□□□ 0.24
SPT8YLR055C TY1B-ER2Q03619 1755 aa16.55■□□□□ 0.24
SPT8YLR055C TY1B-MR1Q04214 1755 aa16.55■□□□□ 0.24
SPT8YLR055C TY1B-MR2Q04670 1755 aaKnown RBP16.55■□□□□ 0.24
SPT8YLR055C TY1B-LR1Q12088 1755 aaKnown RBP16.55■□□□□ 0.24
SPT8YLR055C TY1B-NL1Q12112 1755 aa16.55■□□□□ 0.24
SPT8YLR055C TY1B-GR1Q12141 1755 aa16.55■□□□□ 0.24
SPT8YLR055C TY1B-BLQ12490 1755 aa16.55■□□□□ 0.24
SPT8YLR055C VTH1P40438 1549 aa16.55■□□□□ 0.24
SPT8YLR055C VTH2P40890 1549 aa16.55■□□□□ 0.24
SPT8YLR055C TSC11P40061 1430 aa16.55■□□□□ 0.24
SPT8YLR055C NTE1Q04958 1679 aa16.46■□□□□ 0.23
SPT8YLR055C NUP159P40477 1460 aa16.4■□□□□ 0.22
SPT8YLR055C SNQ2P32568 1501 aaKnown RBP16.4■□□□□ 0.22
SPT8YLR055C RPO21P04050 1733 aaKnown RBP16.39■□□□□ 0.21
Retrieved 100 of 5,963 RNA–protein pairs in 12.7 ms