RNA–Protein interactions for RNA: YKL014C

URB1, Transcript of Protein required for the normal accumulation of 25S and 5.8S rRNAs, yeast

Gene URB1, Length 5,295 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
URB1	YKL014C	FAP1	P53971	965 aa		1.75	□□□□□ -2.13
URB1	YKL014C	PRY3	P47033	881 aa		1.64	□□□□□ -2.15
URB1	YKL014C	HAA1	Q12753	694 aa	Known RBP	1.4	□□□□□ -2.19
URB1	YKL014C	SIS1	P25294	352 aa	Known RBP	1.38	□□□□□ -2.19
URB1	YKL014C	BUD31	P25337	157 aa	Predicted RBP	1.34	□□□□□ -2.2
URB1	YKL014C	YCK3	P39962	524 aa		1.2	□□□□□ -2.22
URB1	YKL014C	AAD16	Q02895	342 aa		1.15	□□□□□ -2.23
URB1	YKL014C	YGL015C	P33199	130 aa		1.11	□□□□□ -2.23
URB1	YKL014C	UBP9	P39967	754 aa		1.09	□□□□□ -2.23
URB1	YKL014C	RGA2	Q06407	1009 aa		0.99	□□□□□ -2.25
URB1	YKL014C	YJL171C	P46992	396 aa		0.97	□□□□□ -2.25
URB1	YKL014C	MRPL32	P25348	183 aa		0.97	□□□□□ -2.25
URB1	YKL014C	TSR3	Q12094	313 aa	Known RBP	0.96	□□□□□ -2.26
URB1	YKL014C	PRI1	P10363	409 aa		0.92	□□□□□ -2.26
URB1	YKL014C	RGA1	P39083	1007 aa		0.84	□□□□□ -2.27
URB1	YKL014C	TIF4632	P39936	914 aa	Known RBP	0.8	□□□□□ -2.28
URB1	YKL014C	BMT6	Q12291	365 aa		0.77	□□□□□ -2.29
URB1	YKL014C	YBL029C-A	Q3E756	94 aa		0.76	□□□□□ -2.29
URB1	YKL014C	SPP1	Q03012	353 aa		0.75	□□□□□ -2.29
URB1	YKL014C	MAP2	P38174	421 aa	Known RBP	0.74	□□□□□ -2.29
URB1	YKL014C	RPG1	P38249	964 aa	Known RBP	0.74	□□□□□ -2.29
URB1	YKL014C	ISW2	Q08773	1120 aa		0.73	□□□□□ -2.29
URB1	YKL014C	DYN1	P36022	4092 aa		0.72	□□□□□ -2.29
URB1	YKL014C	GBP2	P25555	427 aa	Known RBP RIP-Chip data	0.71	□□□□□ -2.3	not detected
URB1	YKL014C	AIR2	Q12476	344 aa	Known RBP	0.71	□□□□□ -2.3
URB1	YKL014C	WSC3	Q12215	556 aa		0.71	□□□□□ -2.3
URB1	YKL014C	UBP10	P53874	792 aa	Predicted RBP	0.7	□□□□□ -2.3
URB1	YKL014C	TGL3	P40308	642 aa		0.69	□□□□□ -2.3
URB1	YKL014C	TRA1	P38811	3744 aa		0.67	□□□□□ -2.3
URB1	YKL014C	BCK2	P33306	851 aa		0.67	□□□□□ -2.3
URB1	YKL014C	FKH1	P40466	484 aa		0.66	□□□□□ -2.3
URB1	YKL014C	SLX5	P32828	619 aa	Known RBP	0.66	□□□□□ -2.3
URB1	YKL014C	SCY1	P53009	804 aa		0.66	□□□□□ -2.3
URB1	YKL014C	AVT3	P36062	692 aa		0.65	□□□□□ -2.3
URB1	YKL014C	VNX1	P42839	908 aa		0.65	□□□□□ -2.31
URB1	YKL014C	DPS1	P04802	557 aa	Known RBP	0.65	□□□□□ -2.31
URB1	YKL014C	DCD1	P06773	312 aa		0.63	□□□□□ -2.31
URB1	YKL014C	NCR1	Q12200	1170 aa		0.62	□□□□□ -2.31
URB1	YKL014C	CDC27	P38042	758 aa		0.61	□□□□□ -2.31
URB1	YKL014C	LDB19	Q12502	818 aa		0.61	□□□□□ -2.31
URB1	YKL014C	TIF11	P38912	153 aa	Known RBP	0.6	□□□□□ -2.31
URB1	YKL014C	YPL062W	Q02781	134 aa		0.59	□□□□□ -2.32
URB1	YKL014C	GTT3	P39996	337 aa		0.59	□□□□□ -2.32
URB1	YKL014C	TFG1	P41895	735 aa	Predicted RBP	0.58	□□□□□ -2.32
URB1	YKL014C	GAR1	P28007	205 aa	Known RBP	0.58	□□□□□ -2.32
URB1	YKL014C	YOR238W	Q08634	303 aa		0.58	□□□□□ -2.32
URB1	YKL014C	ULI1	P43604	169 aa		0.58	□□□□□ -2.32
URB1	YKL014C	TOM1	Q03280	3268 aa		0.56	□□□□□ -2.32
URB1	YKL014C	VRP1	P37370	817 aa		0.55	□□□□□ -2.32
URB1	YKL014C	XDJ1	P39102	459 aa		0.54	□□□□□ -2.32
URB1	YKL014C	MTC1	P47018	478 aa	Known RBP	0.53	□□□□□ -2.32
URB1	YKL014C	PEX29	Q03370	554 aa		0.53	□□□□□ -2.32
URB1	YKL014C	SAP30	P38429	201 aa		0.53	□□□□□ -2.33
URB1	YKL014C	CHL1	P22516	861 aa	Predicted RBP	0.52	□□□□□ -2.33
URB1	YKL014C	RTG1	P32607	177 aa		0.52	□□□□□ -2.33
URB1	YKL014C	REB1	P21538	810 aa		0.51	□□□□□ -2.33
URB1	YKL014C	MTC5	Q03897	1148 aa		0.51	□□□□□ -2.33
URB1	YKL014C	SRC1	Q03707	834 aa		0.49	□□□□□ -2.33
URB1	YKL014C	TRK1	P12685	1235 aa		0.47	□□□□□ -2.33
URB1	YKL014C	HO	P09932	586 aa		0.47	□□□□□ -2.33
URB1	YKL014C	PRE3	P38624	215 aa		0.46	□□□□□ -2.34
URB1	YKL014C	ELP4	Q02884	456 aa	Known RBP	0.46	□□□□□ -2.34
URB1	YKL014C	NRD1	P53617	575 aa	Known RBP RIP-Chip data	0.45	□□□□□ -2.34	not detected
URB1	YKL014C	IOC2	Q12072	812 aa		0.45	□□□□□ -2.34
URB1	YKL014C	SNF2	P22082	1703 aa		0.45	□□□□□ -2.34
URB1	YKL014C	MDN1	Q12019	4910 aa	Known RBP	0.45	□□□□□ -2.34
URB1	YKL014C	MST1	P07236	462 aa		0.45	□□□□□ -2.34
URB1	YKL014C	EAP1	P36041	632 aa	Known RBP	0.43	□□□□□ -2.34
URB1	YKL014C	YNL035C	P53962	389 aa	Known RBP	0.43	□□□□□ -2.34
URB1	YKL014C	PIB1	Q06651	286 aa		0.43	□□□□□ -2.34
URB1	YKL014C	YAP5	P40574	245 aa		0.42	□□□□□ -2.34
URB1	YKL014C	SEC61	P32915	480 aa		0.42	□□□□□ -2.34
URB1	YKL014C	GCR2	Q01722	534 aa		0.41	□□□□□ -2.34
URB1	YKL014C	YDL129W	Q07555	291 aa		0.41	□□□□□ -2.34
URB1	YKL014C	DAN4	P47179	1161 aa		0.41	□□□□□ -2.34
URB1	YKL014C	SET4	P42948	560 aa		0.4	□□□□□ -2.35
URB1	YKL014C	TRP5	P00931	707 aa	Known RBP	0.39	□□□□□ -2.35
URB1	YKL014C	YRF1-2	P40105	1681 aa		0.38	□□□□□ -2.35
URB1	YKL014C	RPL17A	P05740	184 aa	Known RBP	0.38	□□□□□ -2.35
URB1	YKL014C	RPL17B	P46990	184 aa	Known RBP	0.38	□□□□□ -2.35
URB1	YKL014C	LSB3	P43603	459 aa	Known RBP	0.38	□□□□□ -2.35
URB1	YKL014C	RAS1	P01119	309 aa		0.38	□□□□□ -2.35
URB1	YKL014C	TY1B-DR4	Q07793	1604 aa		0.37	□□□□□ -2.35
URB1	YKL014C	YFR006W	P43590	535 aa		0.36	□□□□□ -2.35
URB1	YKL014C	IRA2	P19158	3079 aa		0.36	□□□□□ -2.35
URB1	YKL014C	SBP1	P10080	294 aa	Known RBP	0.36	□□□□□ -2.35
URB1	YKL014C	TFC8	Q12308	588 aa		0.36	□□□□□ -2.35
URB1	YKL014C	BRE2	P43132	505 aa		0.36	□□□□□ -2.35
URB1	YKL014C	MSB4	Q12317	492 aa		0.35	□□□□□ -2.35
URB1	YKL014C	TY1B-BR	Q12193	1756 aa		0.35	□□□□□ -2.35
URB1	YKL014C	TY1B-GR3	Q12316	1755 aa		0.35	□□□□□ -2.35
URB1	YKL014C	TY1B-OR	Q92393	1755 aa		0.35	□□□□□ -2.35
URB1	YKL014C	TY1B-H	O13535	1793 aa		0.34	□□□□□ -2.36
URB1	YKL014C	TY1B-DR5	P0C2I2	1755 aa		0.34	□□□□□ -2.36
URB1	YKL014C	TY1B-DR6	P0C2I3	1755 aa		0.34	□□□□□ -2.36
URB1	YKL014C	TY1B-LR2	P0C2I5	1755 aa		0.34	□□□□□ -2.36
URB1	YKL014C	TY1B-LR3	P0C2I6	1755 aa	Known RBP	0.34	□□□□□ -2.36
URB1	YKL014C	TY1B-PR1	P0C2I9	1755 aa	Known RBP	0.34	□□□□□ -2.36
URB1	YKL014C	TY1B-PR2	P0C2J0	1756 aa		0.34	□□□□□ -2.36
URB1	YKL014C	TY1B-PR3	P0C2J1	1755 aa	Known RBP	0.34	□□□□□ -2.36

Retrieved 100 of 5,963 RNA–protein pairs in 8.4 ms