RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeastyeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSM4YIL030C SPA2P23201 1466 aaKnown RBP7.08□□□□□ -1.28
SSM4YIL030C INO80P53115 1489 aa6.91□□□□□ -1.3
SSM4YIL030C TY1B-DR4Q07793 1604 aa6.84□□□□□ -1.31
SSM4YIL030C SSN2P38931 1420 aa6.7□□□□□ -1.34
SSM4YIL030C SGS1P35187 1447 aa6.7□□□□□ -1.34
SSM4YIL030C CHD1P32657 1468 aa6.6□□□□□ -1.35
SSM4YIL030C TCB3Q03640 1545 aaKnown RBP6.59□□□□□ -1.35
SSM4YIL030C SIN3P22579 1536 aa6.56□□□□□ -1.36
SSM4YIL030C SKI3P17883 1432 aaKnown RBP6.51□□□□□ -1.37
SSM4YIL030C HSL1P34244 1518 aa6.42□□□□□ -1.38
SSM4YIL030C XRN1P22147 1528 aaKnown RBP6.41□□□□□ -1.38
SSM4YIL030C NUP170P38181 1502 aa6.38□□□□□ -1.39
SSM4YIL030C SSK2P53599 1579 aa6.37□□□□□ -1.39
SSM4YIL030C THO2P53552 1597 aaKnown RBP6.37□□□□□ -1.39
SSM4YIL030C MON2P48563 1636 aaPredicted RBP6.34□□□□□ -1.39
SSM4YIL030C HIR3P47171 1648 aa6.32□□□□□ -1.4
SSM4YIL030C ESP1Q03018 1630 aa6.27□□□□□ -1.41
SSM4YIL030C SPT6P23615 1451 aaKnown RBP6.27□□□□□ -1.41
SSM4YIL030C ECM5Q03214 1411 aa6.19□□□□□ -1.42
SSM4YIL030C REV3P14284 1504 aa6.19□□□□□ -1.42
SSM4YIL030C MYO2P19524 1574 aaKnown RBP6.19□□□□□ -1.42
SSM4YIL030C TY1B-DR3Q99231 1755 aa6.18□□□□□ -1.42
SSM4YIL030C SWR1Q05471 1514 aa6.17□□□□□ -1.42
SSM4YIL030C ATG2P53855 1592 aa6.17□□□□□ -1.42
SSM4YIL030C TY2B-LR1P0C2J3 1770 aa6.14□□□□□ -1.43
SSM4YIL030C TY2B-FP0CX63 1770 aa6.14□□□□□ -1.43
SSM4YIL030C TY2B-GR2P0CX64 1770 aa6.14□□□□□ -1.43
SSM4YIL030C TY2B-CP25384 1770 aa6.14□□□□□ -1.43
SSM4YIL030C TY2B-DR2Q03494 1770 aa6.14□□□□□ -1.43
SSM4YIL030C TY1B-DR1Q03855 1755 aa6.14□□□□□ -1.43
SSM4YIL030C TY2B-DR3Q07791 1770 aaKnown RBP6.14□□□□□ -1.43
SSM4YIL030C TY2B-OR1Q12113 1770 aa6.14□□□□□ -1.43
SSM4YIL030C TY2B-DR1Q12472 1770 aa6.14□□□□□ -1.43
SSM4YIL030C TY2B-OR2Q12501 1770 aa6.14□□□□□ -1.43
SSM4YIL030C MMS22Q06164 1454 aa6.13□□□□□ -1.43
SSM4YIL030C POL1P13382 1468 aa6.12□□□□□ -1.43
SSM4YIL030C PEP1P32319 1579 aa6.12□□□□□ -1.43
SSM4YIL030C UFD4P33202 1483 aa6.12□□□□□ -1.43
SSM4YIL030C STU1P38198 1513 aa6.11□□□□□ -1.43
SSM4YIL030C TY2B-BQ12491 1770 aa6.1□□□□□ -1.43
SSM4YIL030C TY1B-HO13535 1793 aa6.07□□□□□ -1.44
SSM4YIL030C TY1B-DR5P0C2I2 1755 aa6.07□□□□□ -1.44
SSM4YIL030C TY1B-DR6P0C2I3 1755 aa6.07□□□□□ -1.44
SSM4YIL030C TY1B-LR2P0C2I5 1755 aa6.07□□□□□ -1.44
SSM4YIL030C TY1B-LR3P0C2I6 1755 aaKnown RBP6.07□□□□□ -1.44
SSM4YIL030C TY1B-PR1P0C2I9 1755 aaKnown RBP6.07□□□□□ -1.44
SSM4YIL030C TY1B-PR2P0C2J0 1756 aa6.07□□□□□ -1.44
SSM4YIL030C TY1B-PR3P0C2J1 1755 aaKnown RBP6.07□□□□□ -1.44
SSM4YIL030C TY1B-JR1P47098 1755 aa6.07□□□□□ -1.44
SSM4YIL030C TY1B-ML2Q03434 1755 aaKnown RBP6.07□□□□□ -1.44
SSM4YIL030C TY1B-ER1Q03612 1755 aa6.07□□□□□ -1.44
SSM4YIL030C TY1B-ML1Q04711 1755 aaKnown RBP6.07□□□□□ -1.44
SSM4YIL030C TY1B-GR2Q12269 1755 aa6.07□□□□□ -1.44
SSM4YIL030C TY1B-OLQ12273 1755 aa6.07□□□□□ -1.44
SSM4YIL030C TY1B-PLQ12414 1755 aaKnown RBP6.07□□□□□ -1.44
SSM4YIL030C YPK9Q12697 1472 aa6.06□□□□□ -1.44
SSM4YIL030C MLP2P40457 1679 aa6.06□□□□□ -1.44
SSM4YIL030C PDR10P51533 1564 aa6.05□□□□□ -1.44
SSM4YIL030C TY1B-BRQ12193 1756 aa6.05□□□□□ -1.44
SSM4YIL030C TY1B-GR3Q12316 1755 aa6.05□□□□□ -1.44
SSM4YIL030C TY1B-ORQ92393 1755 aa6.05□□□□□ -1.44
SSM4YIL030C ESC1Q03661 1658 aaKnown RBP6.04□□□□□ -1.44
SSM4YIL030C MYO4P32492 1471 aa6.01□□□□□ -1.45
SSM4YIL030C PDR5P33302 1511 aaKnown RBP5.99□□□□□ -1.45
SSM4YIL030C ULS1Q08562 1619 aa5.98□□□□□ -1.45
SSM4YIL030C YOR1P53049 1477 aa5.97□□□□□ -1.45
SSM4YIL030C RPO31P04051 1460 aa5.95□□□□□ -1.46
SSM4YIL030C TY1B-JR2P47100 1755 aaKnown RBP5.94□□□□□ -1.46
SSM4YIL030C TY1B-ER2Q03619 1755 aa5.94□□□□□ -1.46
SSM4YIL030C TY1B-MR1Q04214 1755 aa5.94□□□□□ -1.46
SSM4YIL030C TY1B-MR2Q04670 1755 aaKnown RBP5.94□□□□□ -1.46
SSM4YIL030C TY1B-LR1Q12088 1755 aaKnown RBP5.94□□□□□ -1.46
SSM4YIL030C TY1B-NL1Q12112 1755 aa5.94□□□□□ -1.46
SSM4YIL030C TY1B-GR1Q12141 1755 aa5.94□□□□□ -1.46
SSM4YIL030C TY1B-BLQ12490 1755 aa5.94□□□□□ -1.46
SSM4YIL030C DNA2P38859 1522 aa5.94□□□□□ -1.46
SSM4YIL030C YBT1P32386 1661 aa5.93□□□□□ -1.46
SSM4YIL030C SCC2Q04002 1493 aa5.92□□□□□ -1.46
SSM4YIL030C YCF1P39109 1515 aaKnown RBP5.92□□□□□ -1.46
SSM4YIL030C TY3B-GQ99315 1547 aa5.91□□□□□ -1.46
SSM4YIL030C IRC20Q06554 1556 aa5.9□□□□□ -1.47
SSM4YIL030C BUD4P47136 1447 aa5.87□□□□□ -1.47
SSM4YIL030C SMC4Q12267 1418 aa5.87□□□□□ -1.47
SSM4YIL030C RKR1Q04781 1562 aa5.87□□□□□ -1.47
SSM4YIL030C BPT1P14772 1559 aa5.86□□□□□ -1.47
SSM4YIL030C TRM732Q03496 1420 aa5.83□□□□□ -1.48
SSM4YIL030C RSE1Q04693 1361 aaKnown RBP5.79□□□□□ -1.48
SSM4YIL030C TOP2P06786 1428 aaKnown RBP5.78□□□□□ -1.48
SSM4YIL030C RPO21P04050 1733 aaKnown RBP5.78□□□□□ -1.48
SSM4YIL030C SNQ2P32568 1501 aaKnown RBP5.78□□□□□ -1.48
SSM4YIL030C DRS1P32892 752 aaKnown RBP5.78□□□□□ -1.48
SSM4YIL030C SPP41P38904 1435 aa5.78□□□□□ -1.48
SSM4YIL030C GCN2P15442 1659 aa5.76□□□□□ -1.49
SSM4YIL030C YTA7P40340 1379 aa5.76□□□□□ -1.49
SSM4YIL030C SNT2P53127 1403 aa5.75□□□□□ -1.49
SSM4YIL030C KOG1P38873 1557 aa5.75□□□□□ -1.49
SSM4YIL030C RPA190P10964 1664 aaKnown RBP5.73□□□□□ -1.49
SSM4YIL030C NTE1Q04958 1679 aa5.73□□□□□ -1.49
SSM4YIL030C MDS3P53094 1487 aa5.71□□□□□ -1.5
SSM4YIL030C CDC25P04821 1589 aa5.69□□□□□ -1.5
Retrieved 100 of 5,963 RNA–protein pairs in 14.5 ms