RNA–Protein interactions for RNA: YHR120W

MSH1, Transcript of DNA-binding protein of the mitochondria, yeastyeast

Gene MSH1, Length 2,880 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
MSH1YHR120W MON2P48563 1636 aaPredicted RBP10.08□□□□□ -0.8
MSH1YHR120W INO80P53115 1489 aa10.01□□□□□ -0.81
MSH1YHR120W TCB3Q03640 1545 aaKnown RBP9.72□□□□□ -0.85
MSH1YHR120W SGS1P35187 1447 aa9.69□□□□□ -0.86
MSH1YHR120W TY1B-DR4Q07793 1604 aa9.68□□□□□ -0.86
MSH1YHR120W SWR1Q05471 1514 aa9.67□□□□□ -0.86
MSH1YHR120W DNA2P38859 1522 aa9.58□□□□□ -0.88
MSH1YHR120W KOG1P38873 1557 aa9.46□□□□□ -0.89
MSH1YHR120W HSL1P34244 1518 aa9.39□□□□□ -0.91
MSH1YHR120W SPT6P23615 1451 aaKnown RBP9.36□□□□□ -0.91
MSH1YHR120W SPA2P23201 1466 aaKnown RBP9.26□□□□□ -0.93
MSH1YHR120W HIR3P47171 1648 aa9.19□□□□□ -0.94
MSH1YHR120W RSE1Q04693 1361 aaKnown RBP9.07□□□□□ -0.96
MSH1YHR120W ECM5Q03214 1411 aa9.05□□□□□ -0.96
MSH1YHR120W THO2P53552 1597 aaKnown RBP9.05□□□□□ -0.96
MSH1YHR120W XRN1P22147 1528 aaKnown RBP9.03□□□□□ -0.96
MSH1YHR120W BUD4P47136 1447 aa9.03□□□□□ -0.96
MSH1YHR120W SSN2P38931 1420 aa9.03□□□□□ -0.96
MSH1YHR120W MDS3P53094 1487 aa8.94□□□□□ -0.98
MSH1YHR120W REV3P14284 1504 aa8.89□□□□□ -0.99
MSH1YHR120W PEP1P32319 1579 aa8.87□□□□□ -0.99
MSH1YHR120W ATG2P53855 1592 aa8.86□□□□□ -0.99
MSH1YHR120W SIN3P22579 1536 aa8.81□□□□□ -1
MSH1YHR120W TAF2P23255 1407 aa8.75□□□□□ -1.01
MSH1YHR120W SSK2P53599 1579 aa8.74□□□□□ -1.01
MSH1YHR120W SKI3P17883 1432 aaKnown RBP8.71□□□□□ -1.02
MSH1YHR120W DRS1P32892 752 aaKnown RBP8.69□□□□□ -1.02
MSH1YHR120W ESP1Q03018 1630 aa8.68□□□□□ -1.02
MSH1YHR120W MTC1P47018 478 aaKnown RBP8.68□□□□□ -1.02
MSH1YHR120W BPT1P14772 1559 aa8.67□□□□□ -1.02
MSH1YHR120W MYO2P19524 1574 aaKnown RBP8.58□□□□□ -1.04
MSH1YHR120W YPK9Q12697 1472 aa8.57□□□□□ -1.04
MSH1YHR120W UFD4P33202 1483 aa8.54□□□□□ -1.04
MSH1YHR120W SCC2Q04002 1493 aa8.54□□□□□ -1.04
MSH1YHR120W YCF1P39109 1515 aaKnown RBP8.54□□□□□ -1.04
MSH1YHR120W RPO31P04051 1460 aa8.49□□□□□ -1.05
MSH1YHR120W TY2B-LR1P0C2J3 1770 aa8.43□□□□□ -1.06
MSH1YHR120W TY2B-FP0CX63 1770 aa8.43□□□□□ -1.06
MSH1YHR120W TY2B-GR2P0CX64 1770 aa8.43□□□□□ -1.06
MSH1YHR120W TY2B-CP25384 1770 aa8.43□□□□□ -1.06
MSH1YHR120W TY2B-DR2Q03494 1770 aa8.43□□□□□ -1.06
MSH1YHR120W TY1B-DR1Q03855 1755 aa8.43□□□□□ -1.06
MSH1YHR120W TY2B-DR3Q07791 1770 aaKnown RBP8.43□□□□□ -1.06
MSH1YHR120W TY2B-OR1Q12113 1770 aa8.43□□□□□ -1.06
MSH1YHR120W TY2B-DR1Q12472 1770 aa8.43□□□□□ -1.06
MSH1YHR120W TY2B-OR2Q12501 1770 aa8.43□□□□□ -1.06
MSH1YHR120W CDC25P04821 1589 aa8.4□□□□□ -1.06
MSH1YHR120W CHD1P32657 1468 aa8.39□□□□□ -1.07
MSH1YHR120W TY1B-BRQ12193 1756 aa8.37□□□□□ -1.07
MSH1YHR120W TY1B-GR3Q12316 1755 aa8.37□□□□□ -1.07
MSH1YHR120W TY1B-ORQ92393 1755 aa8.37□□□□□ -1.07
MSH1YHR120W TOP2P06786 1428 aaKnown RBP8.36□□□□□ -1.07
MSH1YHR120W POL1P13382 1468 aa8.36□□□□□ -1.07
MSH1YHR120W RKR1Q04781 1562 aa8.35□□□□□ -1.07
MSH1YHR120W DNF1P32660 1571 aa8.34□□□□□ -1.07
MSH1YHR120W ESC1Q03661 1658 aaKnown RBP8.34□□□□□ -1.07
MSH1YHR120W TY2B-BQ12491 1770 aa8.34□□□□□ -1.07
MSH1YHR120W TY1B-DR3Q99231 1755 aa8.33□□□□□ -1.08
MSH1YHR120W PAN1P32521 1480 aa8.31□□□□□ -1.08
MSH1YHR120W TY1B-HO13535 1793 aa8.31□□□□□ -1.08
MSH1YHR120W TY1B-DR5P0C2I2 1755 aa8.31□□□□□ -1.08
MSH1YHR120W TY1B-DR6P0C2I3 1755 aa8.31□□□□□ -1.08
MSH1YHR120W TY1B-LR2P0C2I5 1755 aa8.31□□□□□ -1.08
MSH1YHR120W TY1B-LR3P0C2I6 1755 aaKnown RBP8.31□□□□□ -1.08
MSH1YHR120W TY1B-PR1P0C2I9 1755 aaKnown RBP8.31□□□□□ -1.08
MSH1YHR120W TY1B-PR2P0C2J0 1756 aa8.31□□□□□ -1.08
MSH1YHR120W TY1B-PR3P0C2J1 1755 aaKnown RBP8.31□□□□□ -1.08
MSH1YHR120W TY1B-JR1P47098 1755 aa8.31□□□□□ -1.08
MSH1YHR120W TY1B-ML2Q03434 1755 aaKnown RBP8.31□□□□□ -1.08
MSH1YHR120W TY1B-ER1Q03612 1755 aa8.31□□□□□ -1.08
MSH1YHR120W TY1B-ML1Q04711 1755 aaKnown RBP8.31□□□□□ -1.08
MSH1YHR120W TY1B-GR2Q12269 1755 aa8.31□□□□□ -1.08
MSH1YHR120W TY1B-OLQ12273 1755 aa8.31□□□□□ -1.08
MSH1YHR120W TY1B-PLQ12414 1755 aaKnown RBP8.31□□□□□ -1.08
MSH1YHR120W RQC2Q12532 1038 aaKnown RBP8.29□□□□□ -1.08
MSH1YHR120W STU1P38198 1513 aa8.28□□□□□ -1.08
MSH1YHR120W YOR1P53049 1477 aa8.28□□□□□ -1.08
MSH1YHR120W RPA190P10964 1664 aaKnown RBP8.27□□□□□ -1.09
MSH1YHR120W MMS22Q06164 1454 aa8.26□□□□□ -1.09
MSH1YHR120W MET5P47169 1442 aa8.26□□□□□ -1.09
MSH1YHR120W SMC4Q12267 1418 aa8.26□□□□□ -1.09
MSH1YHR120W SPP41P38904 1435 aa8.19□□□□□ -1.1
MSH1YHR120W TRM732Q03496 1420 aa8.18□□□□□ -1.1
MSH1YHR120W TY1B-JR2P47100 1755 aaKnown RBP8.15□□□□□ -1.1
MSH1YHR120W TY1B-ER2Q03619 1755 aa8.15□□□□□ -1.1
MSH1YHR120W TY1B-MR1Q04214 1755 aa8.15□□□□□ -1.1
MSH1YHR120W TY1B-MR2Q04670 1755 aaKnown RBP8.15□□□□□ -1.1
MSH1YHR120W TY1B-LR1Q12088 1755 aaKnown RBP8.15□□□□□ -1.1
MSH1YHR120W TY1B-NL1Q12112 1755 aa8.15□□□□□ -1.1
MSH1YHR120W TY1B-GR1Q12141 1755 aa8.15□□□□□ -1.1
MSH1YHR120W TY1B-BLQ12490 1755 aa8.15□□□□□ -1.1
MSH1YHR120W LTE1P07866 1435 aa8.14□□□□□ -1.11
MSH1YHR120W VTH1P40438 1549 aa8.14□□□□□ -1.11
MSH1YHR120W VTH2P40890 1549 aa8.14□□□□□ -1.11
MSH1YHR120W TSC11P40061 1430 aa8.13□□□□□ -1.11
MSH1YHR120W NTE1Q04958 1679 aa8.13□□□□□ -1.11
MSH1YHR120W MYO4P32492 1471 aa8.11□□□□□ -1.11
MSH1YHR120W NUP159P40477 1460 aa8.11□□□□□ -1.11
MSH1YHR120W YRF1-1P0CX20 1796 aa8.1□□□□□ -1.11
MSH1YHR120W YRF1-5P0CX21 1796 aa8.1□□□□□ -1.11
Retrieved 100 of 5,963 RNA–protein pairs in 8.3 ms