RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeastyeast

Gene VPS29, Length 849 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS29YHR012W MTC1P47018 478 aaKnown RBP11.49□□□□□ -0.57
VPS29YHR012W FAP1P53971 965 aa11.35□□□□□ -0.59
VPS29YHR012W PRY3P47033 881 aa10.66□□□□□ -0.7
VPS29YHR012W AAD16Q02895 342 aa10.24□□□□□ -0.77
VPS29YHR012W PRI1P10363 409 aa10.17□□□□□ -0.78
VPS29YHR012W INO80P53115 1489 aa10.1□□□□□ -0.79
VPS29YHR012W HAA1Q12753 694 aaKnown RBP10.03□□□□□ -0.8
VPS29YHR012W MON2P48563 1636 aaPredicted RBP10.03□□□□□ -0.8
VPS29YHR012W YCK3P39962 524 aa9.93□□□□□ -0.82
VPS29YHR012W DRS1P32892 752 aaKnown RBP9.84□□□□□ -0.83
VPS29YHR012W ISW2Q08773 1120 aa9.77□□□□□ -0.85
VPS29YHR012W RPG1P38249 964 aaKnown RBP9.61□□□□□ -0.87
VPS29YHR012W DNA2P38859 1522 aa9.56□□□□□ -0.88
VPS29YHR012W TCB3Q03640 1545 aaKnown RBP9.56□□□□□ -0.88
VPS29YHR012W SWR1Q05471 1514 aa9.54□□□□□ -0.88
VPS29YHR012W TSR3Q12094 313 aaKnown RBP9.53□□□□□ -0.88
VPS29YHR012W KOG1P38873 1557 aa9.48□□□□□ -0.89
VPS29YHR012W TY1B-DR4Q07793 1604 aa9.45□□□□□ -0.9
VPS29YHR012W SGS1P35187 1447 aa9.41□□□□□ -0.9
VPS29YHR012W RSE1Q04693 1361 aaKnown RBP9.31□□□□□ -0.92
VPS29YHR012W MRPL32P25348 183 aa9.23□□□□□ -0.93
VPS29YHR012W SPT6P23615 1451 aaKnown RBP9.15□□□□□ -0.95
VPS29YHR012W YGL015CP33199 130 aa9.12□□□□□ -0.95
VPS29YHR012W HSL1P34244 1518 aa9.11□□□□□ -0.95
VPS29YHR012W SPA2P23201 1466 aaKnown RBP9.11□□□□□ -0.95
VPS29YHR012W ECM5Q03214 1411 aa8.99□□□□□ -0.97
VPS29YHR012W DIP2Q12220 943 aaPredicted RBP8.94□□□□□ -0.98
VPS29YHR012W HIR3P47171 1648 aa8.94□□□□□ -0.98
VPS29YHR012W BUD4P47136 1447 aa8.91□□□□□ -0.98
VPS29YHR012W THO2P53552 1597 aaKnown RBP8.9□□□□□ -0.98
VPS29YHR012W XRN1P22147 1528 aaKnown RBP8.8□□□□□ -1
VPS29YHR012W MDS3P53094 1487 aa8.77□□□□□ -1.01
VPS29YHR012W REB1P21538 810 aa8.76□□□□□ -1.01
VPS29YHR012W BUD31P25337 157 aaPredicted RBP8.72□□□□□ -1.01
VPS29YHR012W PEP1P32319 1579 aa8.68□□□□□ -1.02
VPS29YHR012W RPL17AP05740 184 aaKnown RBP8.66□□□□□ -1.02
VPS29YHR012W RPL17BP46990 184 aaKnown RBP8.66□□□□□ -1.02
VPS29YHR012W REV3P14284 1504 aa8.65□□□□□ -1.02
VPS29YHR012W SSN2P38931 1420 aa8.62□□□□□ -1.03
VPS29YHR012W ATG2P53855 1592 aa8.61□□□□□ -1.03
VPS29YHR012W BPT1P14772 1559 aa8.61□□□□□ -1.03
VPS29YHR012W SKI3P17883 1432 aaKnown RBP8.55□□□□□ -1.04
VPS29YHR012W TAF2P23255 1407 aa8.53□□□□□ -1.04
VPS29YHR012W CDC27P38042 758 aa8.52□□□□□ -1.05
VPS29YHR012W UBP10P53874 792 aaPredicted RBP8.52□□□□□ -1.05
VPS29YHR012W SIN3P22579 1536 aa8.5□□□□□ -1.05
VPS29YHR012W SSK2P53599 1579 aa8.48□□□□□ -1.05
VPS29YHR012W YCF1P39109 1515 aaKnown RBP8.44□□□□□ -1.06
VPS29YHR012W ESP1Q03018 1630 aa8.41□□□□□ -1.06
VPS29YHR012W MAP2P38174 421 aaKnown RBP8.39□□□□□ -1.07
VPS29YHR012W UFD4P33202 1483 aa8.38□□□□□ -1.07
VPS29YHR012W AVT3P36062 692 aa8.35□□□□□ -1.07
VPS29YHR012W YPK9Q12697 1472 aa8.32□□□□□ -1.08
VPS29YHR012W MYO2P19524 1574 aaKnown RBP8.32□□□□□ -1.08
VPS29YHR012W YKR023WP36119 530 aaKnown RBP8.3□□□□□ -1.08
VPS29YHR012W SCC2Q04002 1493 aa8.29□□□□□ -1.08
VPS29YHR012W RQC2Q12532 1038 aaKnown RBP8.28□□□□□ -1.08
VPS29YHR012W MET5P47169 1442 aa8.28□□□□□ -1.08
VPS29YHR012W RPO31P04051 1460 aa8.27□□□□□ -1.09
VPS29YHR012W CHD1P32657 1468 aa8.26□□□□□ -1.09
VPS29YHR012W SIS1P25294 352 aaKnown RBP8.24□□□□□ -1.09
VPS29YHR012W CDC25P04821 1589 aa8.23□□□□□ -1.09
VPS29YHR012W TIF4632P39936 914 aaKnown RBP8.21□□□□□ -1.1
VPS29YHR012W UBP9P39967 754 aa8.21□□□□□ -1.1
VPS29YHR012W MIF2P35201 549 aa8.2□□□□□ -1.1
VPS29YHR012W SPT21P35209 758 aa8.2□□□□□ -1.1
VPS29YHR012W ESC1Q03661 1658 aaKnown RBP8.19□□□□□ -1.1
VPS29YHR012W LTE1P07866 1435 aa8.19□□□□□ -1.1
VPS29YHR012W PAN1P32521 1480 aa8.19□□□□□ -1.1
VPS29YHR012W TY2B-LR1P0C2J3 1770 aa8.17□□□□□ -1.1
VPS29YHR012W TY2B-FP0CX63 1770 aa8.17□□□□□ -1.1
VPS29YHR012W TY2B-GR2P0CX64 1770 aa8.17□□□□□ -1.1
VPS29YHR012W TY2B-CP25384 1770 aa8.17□□□□□ -1.1
VPS29YHR012W TY2B-DR2Q03494 1770 aa8.17□□□□□ -1.1
VPS29YHR012W TY1B-DR1Q03855 1755 aa8.17□□□□□ -1.1
VPS29YHR012W TY2B-DR3Q07791 1770 aaKnown RBP8.17□□□□□ -1.1
VPS29YHR012W TY2B-OR1Q12113 1770 aa8.17□□□□□ -1.1
VPS29YHR012W TY2B-DR1Q12472 1770 aa8.17□□□□□ -1.1
VPS29YHR012W TY2B-OR2Q12501 1770 aa8.17□□□□□ -1.1
VPS29YHR012W TOP2P06786 1428 aaKnown RBP8.16□□□□□ -1.1
VPS29YHR012W TFC8Q12308 588 aa8.16□□□□□ -1.1
VPS29YHR012W DNF1P32660 1571 aa8.15□□□□□ -1.1
VPS29YHR012W TY1B-BRQ12193 1756 aa8.15□□□□□ -1.11
VPS29YHR012W TY1B-GR3Q12316 1755 aa8.15□□□□□ -1.11
VPS29YHR012W TY1B-ORQ92393 1755 aa8.15□□□□□ -1.11
VPS29YHR012W TGL3P40308 642 aa8.14□□□□□ -1.11
VPS29YHR012W RKR1Q04781 1562 aa8.14□□□□□ -1.11
VPS29YHR012W HOP09932 586 aa8.13□□□□□ -1.11
VPS29YHR012W RPA190P10964 1664 aaKnown RBP8.09□□□□□ -1.11
VPS29YHR012W MMS22Q06164 1454 aa8.09□□□□□ -1.11
VPS29YHR012W DCD1P06773 312 aa8.09□□□□□ -1.11
VPS29YHR012W TRM732Q03496 1420 aa8.09□□□□□ -1.11
VPS29YHR012W GEA2P39993 1459 aaKnown RBP8.08□□□□□ -1.12
VPS29YHR012W SCY1P53009 804 aa8.08□□□□□ -1.12
VPS29YHR012W TY1B-HO13535 1793 aa8.07□□□□□ -1.12
VPS29YHR012W TY1B-DR5P0C2I2 1755 aa8.07□□□□□ -1.12
VPS29YHR012W TY1B-DR6P0C2I3 1755 aa8.07□□□□□ -1.12
VPS29YHR012W TY1B-LR2P0C2I5 1755 aa8.07□□□□□ -1.12
VPS29YHR012W TY1B-LR3P0C2I6 1755 aaKnown RBP8.07□□□□□ -1.12
VPS29YHR012W TY1B-PR1P0C2I9 1755 aaKnown RBP8.07□□□□□ -1.12
Retrieved 100 of 5,963 RNA–protein pairs in 10.1 ms