RNA–Protein interactions for RNA: YHL006C

SHU1, Transcript of Component of Shu complex (aka PCSS complex), yeastyeast

Gene SHU1, Length 453 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHU1YHL006C MON2P48563 1636 aaPredicted RBP27.42■■□□□ 1.98
SHU1YHL006C INO80P53115 1489 aa27.32■■□□□ 1.96
SHU1YHL006C SWR1Q05471 1514 aa26.24■■□□□ 1.79
SHU1YHL006C TCB3Q03640 1545 aaKnown RBP26.2■■□□□ 1.79
SHU1YHL006C TY1B-DR4Q07793 1604 aa26.16■■□□□ 1.78
SHU1YHL006C DNA2P38859 1522 aa26.1■■□□□ 1.77
SHU1YHL006C SGS1P35187 1447 aa26.03■■□□□ 1.76
SHU1YHL006C KOG1P38873 1557 aa25.73■■□□□ 1.71
SHU1YHL006C HSL1P34244 1518 aa25.3■■□□□ 1.64
SHU1YHL006C SPT6P23615 1451 aaKnown RBP25.24■■□□□ 1.63
SHU1YHL006C SPA2P23201 1466 aaKnown RBP24.97■■□□□ 1.59
SHU1YHL006C RSE1Q04693 1361 aaKnown RBP24.89■■□□□ 1.57
SHU1YHL006C HIR3P47171 1648 aa24.76■■□□□ 1.55
SHU1YHL006C ECM5Q03214 1411 aa24.56■■□□□ 1.52
SHU1YHL006C THO2P53552 1597 aaKnown RBP24.44■■□□□ 1.5
SHU1YHL006C BUD4P47136 1447 aa24.41■■□□□ 1.5
SHU1YHL006C XRN1P22147 1528 aaKnown RBP24.34■■□□□ 1.49
SHU1YHL006C MDS3P53094 1487 aa24.17■■□□□ 1.46
SHU1YHL006C SSN2P38931 1420 aa24.12■■□□□ 1.45
SHU1YHL006C PEP1P32319 1579 aa23.99■■□□□ 1.43
SHU1YHL006C REV3P14284 1504 aa23.91■■□□□ 1.42
SHU1YHL006C ATG2P53855 1592 aa23.91■■□□□ 1.42
SHU1YHL006C MTC1P47018 478 aaKnown RBP23.77■■□□□ 1.4
SHU1YHL006C SIN3P22579 1536 aa23.64■■□□□ 1.37
SHU1YHL006C TAF2P23255 1407 aa23.62■■□□□ 1.37
SHU1YHL006C BPT1P14772 1559 aa23.51■■□□□ 1.35
SHU1YHL006C SKI3P17883 1432 aaKnown RBP23.5■■□□□ 1.35
SHU1YHL006C SSK2P53599 1579 aa23.46■■□□□ 1.35
SHU1YHL006C ESP1Q03018 1630 aa23.37■■□□□ 1.33
SHU1YHL006C DRS1P32892 752 aaKnown RBP23.26■■□□□ 1.31
SHU1YHL006C YCF1P39109 1515 aaKnown RBP23.11■■□□□ 1.29
SHU1YHL006C UFD4P33202 1483 aa23.07■■□□□ 1.28
SHU1YHL006C YPK9Q12697 1472 aa23.02■■□□□ 1.28
SHU1YHL006C MYO2P19524 1574 aaKnown RBP23.01■■□□□ 1.27
SHU1YHL006C SCC2Q04002 1493 aa23■■□□□ 1.27
SHU1YHL006C RPO31P04051 1460 aa22.85■■□□□ 1.25
SHU1YHL006C TY2B-LR1P0C2J3 1770 aa22.76■■□□□ 1.23
SHU1YHL006C TY2B-FP0CX63 1770 aa22.76■■□□□ 1.23
SHU1YHL006C TY2B-GR2P0CX64 1770 aa22.76■■□□□ 1.23
SHU1YHL006C TY2B-CP25384 1770 aa22.76■■□□□ 1.23
SHU1YHL006C TY2B-DR2Q03494 1770 aa22.76■■□□□ 1.23
SHU1YHL006C TY1B-DR1Q03855 1755 aa22.76■■□□□ 1.23
SHU1YHL006C TY2B-DR3Q07791 1770 aaKnown RBP22.76■■□□□ 1.23
SHU1YHL006C TY2B-OR1Q12113 1770 aa22.76■■□□□ 1.23
SHU1YHL006C TY2B-DR1Q12472 1770 aa22.76■■□□□ 1.23
SHU1YHL006C TY2B-OR2Q12501 1770 aa22.76■■□□□ 1.23
SHU1YHL006C CDC25P04821 1589 aa22.69■■□□□ 1.22
SHU1YHL006C CHD1P32657 1468 aa22.66■■□□□ 1.22
SHU1YHL006C TY1B-BRQ12193 1756 aa22.63■■□□□ 1.21
SHU1YHL006C TY1B-GR3Q12316 1755 aa22.63■■□□□ 1.21
SHU1YHL006C TY1B-ORQ92393 1755 aa22.63■■□□□ 1.21
SHU1YHL006C ESC1Q03661 1658 aaKnown RBP22.58■■□□□ 1.2
SHU1YHL006C DNF1P32660 1571 aa22.57■■□□□ 1.2
SHU1YHL006C RQC2Q12532 1038 aaKnown RBP22.49■■□□□ 1.19
SHU1YHL006C TOP2P06786 1428 aaKnown RBP22.48■■□□□ 1.19
SHU1YHL006C TY2B-BQ12491 1770 aa22.48■■□□□ 1.19
SHU1YHL006C TY1B-DR3Q99231 1755 aa22.45■■□□□ 1.19
SHU1YHL006C PAN1P32521 1480 aa22.45■■□□□ 1.18
SHU1YHL006C RKR1Q04781 1562 aa22.44■■□□□ 1.18
SHU1YHL006C TY1B-HO13535 1793 aa22.43■■□□□ 1.18
SHU1YHL006C TY1B-DR5P0C2I2 1755 aa22.43■■□□□ 1.18
SHU1YHL006C TY1B-DR6P0C2I3 1755 aa22.43■■□□□ 1.18
SHU1YHL006C TY1B-LR2P0C2I5 1755 aa22.43■■□□□ 1.18
SHU1YHL006C TY1B-LR3P0C2I6 1755 aaKnown RBP22.43■■□□□ 1.18
SHU1YHL006C TY1B-PR1P0C2I9 1755 aaKnown RBP22.43■■□□□ 1.18
SHU1YHL006C TY1B-PR2P0C2J0 1756 aa22.43■■□□□ 1.18
SHU1YHL006C TY1B-PR3P0C2J1 1755 aaKnown RBP22.43■■□□□ 1.18
SHU1YHL006C TY1B-JR1P47098 1755 aa22.43■■□□□ 1.18
SHU1YHL006C TY1B-ML2Q03434 1755 aaKnown RBP22.43■■□□□ 1.18
SHU1YHL006C TY1B-ER1Q03612 1755 aa22.43■■□□□ 1.18
SHU1YHL006C TY1B-ML1Q04711 1755 aaKnown RBP22.43■■□□□ 1.18
SHU1YHL006C TY1B-GR2Q12269 1755 aa22.43■■□□□ 1.18
SHU1YHL006C TY1B-OLQ12273 1755 aa22.43■■□□□ 1.18
SHU1YHL006C TY1B-PLQ12414 1755 aaKnown RBP22.43■■□□□ 1.18
SHU1YHL006C MET5P47169 1442 aa22.4■■□□□ 1.18
SHU1YHL006C POL1P13382 1468 aa22.37■■□□□ 1.17
SHU1YHL006C RPA190P10964 1664 aaKnown RBP22.36■■□□□ 1.17
SHU1YHL006C MMS22Q06164 1454 aa22.27■■□□□ 1.16
SHU1YHL006C STU1P38198 1513 aa22.21■■□□□ 1.15
SHU1YHL006C YOR1P53049 1477 aa22.19■■□□□ 1.14
SHU1YHL006C SMC4Q12267 1418 aa22.15■■□□□ 1.14
SHU1YHL006C LTE1P07866 1435 aa22.1■■□□□ 1.13
SHU1YHL006C TRM732Q03496 1420 aa22.08■■□□□ 1.13
SHU1YHL006C SPP41P38904 1435 aa22.04■■□□□ 1.12
SHU1YHL006C TY1B-JR2P47100 1755 aaKnown RBP21.99■■□□□ 1.11
SHU1YHL006C TY1B-ER2Q03619 1755 aa21.99■■□□□ 1.11
SHU1YHL006C TY1B-MR1Q04214 1755 aa21.99■■□□□ 1.11
SHU1YHL006C TY1B-MR2Q04670 1755 aaKnown RBP21.99■■□□□ 1.11
SHU1YHL006C TY1B-LR1Q12088 1755 aaKnown RBP21.99■■□□□ 1.11
SHU1YHL006C TY1B-NL1Q12112 1755 aa21.99■■□□□ 1.11
SHU1YHL006C TY1B-GR1Q12141 1755 aa21.99■■□□□ 1.11
SHU1YHL006C TY1B-BLQ12490 1755 aa21.99■■□□□ 1.11
SHU1YHL006C BNI1P41832 1953 aa21.95■■□□□ 1.1
SHU1YHL006C YRF1-1P0CX20 1796 aa21.94■■□□□ 1.1
SHU1YHL006C YRF1-5P0CX21 1796 aa21.94■■□□□ 1.1
SHU1YHL006C YRF1-8P0CX22 1796 aa21.94■■□□□ 1.1
SHU1YHL006C NUP159P40477 1460 aa21.89■■□□□ 1.09
SHU1YHL006C NTE1Q04958 1679 aa21.88■■□□□ 1.09
SHU1YHL006C TSC11P40061 1430 aa21.88■■□□□ 1.09
SHU1YHL006C VTH1P40438 1549 aa21.87■■□□□ 1.09
Retrieved 100 of 5,963 RNA–protein pairs in 12.3 ms