RNA–Protein interactions for RNA: YFR034C

PHO4, Transcript of Basic helix-loop-helix (bHLH) transcription factor of the myc-family, yeastyeast

Gene PHO4, Length 939 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PHO4YFR034C SGS1P35187 1447 aa23.33■■□□□ 1.32
PHO4YFR034C INO80P53115 1489 aa23■■□□□ 1.27
PHO4YFR034C TCB3Q03640 1545 aaKnown RBP22.73■■□□□ 1.23
PHO4YFR034C TY1B-DR4Q07793 1604 aa22.52■■□□□ 1.2
PHO4YFR034C MON2P48563 1636 aaPredicted RBP22.49■■□□□ 1.19
PHO4YFR034C SPA2P23201 1466 aaKnown RBP22.37■■□□□ 1.17
PHO4YFR034C SSN2P38931 1420 aa22.27■■□□□ 1.16
PHO4YFR034C HSL1P34244 1518 aa22.06■■□□□ 1.12
PHO4YFR034C SWR1Q05471 1514 aa22.01■■□□□ 1.11
PHO4YFR034C SPT6P23615 1451 aaKnown RBP21.96■■□□□ 1.11
PHO4YFR034C HIR3P47171 1648 aa21.65■■□□□ 1.06
PHO4YFR034C DRS1P32892 752 aaKnown RBP21.48■■□□□ 1.03
PHO4YFR034C XRN1P22147 1528 aaKnown RBP21.44■■□□□ 1.02
PHO4YFR034C DNA2P38859 1522 aa21.34■■□□□ 1.01
PHO4YFR034C KOG1P38873 1557 aa21.31■■□□□ 1
PHO4YFR034C REV3P14284 1504 aa21.19■□□□□ 0.98
PHO4YFR034C SIN3P22579 1536 aa21.09■□□□□ 0.97
PHO4YFR034C THO2P53552 1597 aaKnown RBP21.05■□□□□ 0.96
PHO4YFR034C SSK2P53599 1579 aa20.94■□□□□ 0.94
PHO4YFR034C BUD4P47136 1447 aa20.89■□□□□ 0.94
PHO4YFR034C TAF2P23255 1407 aa20.79■□□□□ 0.92
PHO4YFR034C ECM5Q03214 1411 aa20.77■□□□□ 0.91
PHO4YFR034C ESP1Q03018 1630 aa20.76■□□□□ 0.91
PHO4YFR034C ATG2P53855 1592 aa20.74■□□□□ 0.91
PHO4YFR034C MYO2P19524 1574 aaKnown RBP20.69■□□□□ 0.9
PHO4YFR034C MDS3P53094 1487 aa20.57■□□□□ 0.88
PHO4YFR034C PEP1P32319 1579 aa20.55■□□□□ 0.88
PHO4YFR034C SKI3P17883 1432 aaKnown RBP20.51■□□□□ 0.87
PHO4YFR034C YPK9Q12697 1472 aa20.43■□□□□ 0.86
PHO4YFR034C POL1P13382 1468 aa20.29■□□□□ 0.84
PHO4YFR034C SCC2Q04002 1493 aa20.24■□□□□ 0.83
PHO4YFR034C STU1P38198 1513 aa20.16■□□□□ 0.82
PHO4YFR034C RPO31P04051 1460 aa20.12■□□□□ 0.81
PHO4YFR034C RKR1Q04781 1562 aa20.11■□□□□ 0.81
PHO4YFR034C CHD1P32657 1468 aa20.05■□□□□ 0.8
PHO4YFR034C UFD4P33202 1483 aa20.05■□□□□ 0.8
PHO4YFR034C YOR1P53049 1477 aa20■□□□□ 0.79
PHO4YFR034C YCF1P39109 1515 aaKnown RBP19.99■□□□□ 0.79
PHO4YFR034C TY2B-LR1P0C2J3 1770 aa19.97■□□□□ 0.79
PHO4YFR034C TY2B-FP0CX63 1770 aa19.97■□□□□ 0.79
PHO4YFR034C TY2B-GR2P0CX64 1770 aa19.97■□□□□ 0.79
PHO4YFR034C TY2B-CP25384 1770 aa19.97■□□□□ 0.79
PHO4YFR034C TY2B-DR2Q03494 1770 aa19.97■□□□□ 0.79
PHO4YFR034C TY1B-DR1Q03855 1755 aa19.97■□□□□ 0.79
PHO4YFR034C TY2B-DR3Q07791 1770 aaKnown RBP19.97■□□□□ 0.79
PHO4YFR034C TY2B-OR1Q12113 1770 aa19.97■□□□□ 0.79
PHO4YFR034C TY2B-DR1Q12472 1770 aa19.97■□□□□ 0.79
PHO4YFR034C TY2B-OR2Q12501 1770 aa19.97■□□□□ 0.79
PHO4YFR034C MMS22Q06164 1454 aa19.97■□□□□ 0.79
PHO4YFR034C TOP2P06786 1428 aaKnown RBP19.96■□□□□ 0.79
PHO4YFR034C YTA7P40340 1379 aa19.94■□□□□ 0.78
PHO4YFR034C BPT1P14772 1559 aa19.93■□□□□ 0.78
PHO4YFR034C SMC4Q12267 1418 aa19.87■□□□□ 0.77
PHO4YFR034C TY1B-DR3Q99231 1755 aa19.85■□□□□ 0.77
PHO4YFR034C MYO4P32492 1471 aa19.84■□□□□ 0.77
PHO4YFR034C TY2B-BQ12491 1770 aa19.79■□□□□ 0.76
PHO4YFR034C TY1B-BRQ12193 1756 aa19.68■□□□□ 0.74
PHO4YFR034C TY1B-GR3Q12316 1755 aa19.68■□□□□ 0.74
PHO4YFR034C TY1B-ORQ92393 1755 aa19.68■□□□□ 0.74
PHO4YFR034C TY1B-HO13535 1793 aa19.66■□□□□ 0.74
PHO4YFR034C TY1B-DR5P0C2I2 1755 aa19.66■□□□□ 0.74
PHO4YFR034C TY1B-DR6P0C2I3 1755 aa19.66■□□□□ 0.74
PHO4YFR034C TY1B-LR2P0C2I5 1755 aa19.66■□□□□ 0.74
PHO4YFR034C TY1B-LR3P0C2I6 1755 aaKnown RBP19.66■□□□□ 0.74
PHO4YFR034C TY1B-PR1P0C2I9 1755 aaKnown RBP19.66■□□□□ 0.74
PHO4YFR034C TY1B-PR2P0C2J0 1756 aa19.66■□□□□ 0.74
PHO4YFR034C TY1B-PR3P0C2J1 1755 aaKnown RBP19.66■□□□□ 0.74
PHO4YFR034C TY1B-JR1P47098 1755 aa19.66■□□□□ 0.74
PHO4YFR034C TY1B-ML2Q03434 1755 aaKnown RBP19.66■□□□□ 0.74
PHO4YFR034C TY1B-ER1Q03612 1755 aa19.66■□□□□ 0.74
PHO4YFR034C TY1B-ML1Q04711 1755 aaKnown RBP19.66■□□□□ 0.74
PHO4YFR034C TY1B-GR2Q12269 1755 aa19.66■□□□□ 0.74
PHO4YFR034C TY1B-OLQ12273 1755 aa19.66■□□□□ 0.74
PHO4YFR034C TY1B-PLQ12414 1755 aaKnown RBP19.66■□□□□ 0.74
PHO4YFR034C RSE1Q04693 1361 aaKnown RBP19.66■□□□□ 0.74
PHO4YFR034C CDC25P04821 1589 aa19.6■□□□□ 0.73
PHO4YFR034C SNQ2P32568 1501 aaKnown RBP19.53■□□□□ 0.72
PHO4YFR034C SAS10Q12136 610 aaPredicted RBP19.52■□□□□ 0.72
PHO4YFR034C SPP41P38904 1435 aa19.51■□□□□ 0.71
PHO4YFR034C MLP2P40457 1679 aa19.46■□□□□ 0.71
PHO4YFR034C RQC2Q12532 1038 aaKnown RBP19.45■□□□□ 0.7
PHO4YFR034C PAN1P32521 1480 aa19.45■□□□□ 0.7
PHO4YFR034C ESC1Q03661 1658 aaKnown RBP19.42■□□□□ 0.7
PHO4YFR034C VTH1P40438 1549 aa19.41■□□□□ 0.7
PHO4YFR034C VTH2P40890 1549 aa19.41■□□□□ 0.7
PHO4YFR034C STH1P32597 1359 aa19.39■□□□□ 0.69
PHO4YFR034C TSC11P40061 1430 aa19.36■□□□□ 0.69
PHO4YFR034C PDR15Q04182 1529 aaKnown RBP19.34■□□□□ 0.69
PHO4YFR034C TY1B-JR2P47100 1755 aaKnown RBP19.33■□□□□ 0.68
PHO4YFR034C TY1B-ER2Q03619 1755 aa19.33■□□□□ 0.68
PHO4YFR034C TY1B-MR1Q04214 1755 aa19.33■□□□□ 0.68
PHO4YFR034C TY1B-MR2Q04670 1755 aaKnown RBP19.33■□□□□ 0.68
PHO4YFR034C TY1B-LR1Q12088 1755 aaKnown RBP19.33■□□□□ 0.68
PHO4YFR034C TY1B-NL1Q12112 1755 aa19.33■□□□□ 0.68
PHO4YFR034C TY1B-GR1Q12141 1755 aa19.33■□□□□ 0.68
PHO4YFR034C TY1B-BLQ12490 1755 aa19.33■□□□□ 0.68
PHO4YFR034C TAF7Q05021 590 aa19.32■□□□□ 0.68
PHO4YFR034C ULS1Q08562 1619 aa19.32■□□□□ 0.68
PHO4YFR034C MTC1P47018 478 aaKnown RBP19.28■□□□□ 0.68
PHO4YFR034C RPA190P10964 1664 aaKnown RBP19.27■□□□□ 0.68
Retrieved 100 of 5,963 RNA–protein pairs in 13.8 ms