RNA–Protein interactions for RNA: YDR080W

VPS41, Transcript of Subunit of the HOPS endocytic tethering complex, yeastyeast

Gene VPS41, Length 2,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS41YDR080W MTC1P47018 478 aaKnown RBP9□□□□□ -0.97
VPS41YDR080W DRS1P32892 752 aaKnown RBP8.61□□□□□ -1.03
VPS41YDR080W FAP1P53971 965 aa7.72□□□□□ -1.17
VPS41YDR080W DIP2Q12220 943 aaPredicted RBP7.48□□□□□ -1.21
VPS41YDR080W PRI1P10363 409 aa7.47□□□□□ -1.21
VPS41YDR080W AVT3P36062 692 aa7.37□□□□□ -1.23
VPS41YDR080W AAD16Q02895 342 aa7.3□□□□□ -1.24
VPS41YDR080W ISW2Q08773 1120 aa7.3□□□□□ -1.24
VPS41YDR080W RPG1P38249 964 aaKnown RBP7.29□□□□□ -1.24
VPS41YDR080W PRY3P47033 881 aa7.26□□□□□ -1.25
VPS41YDR080W BFR2Q06631 534 aaKnown RBP7.24□□□□□ -1.25
VPS41YDR080W YCK3P39962 524 aa7.11□□□□□ -1.27
VPS41YDR080W RSE1Q04693 1361 aaKnown RBP7.1□□□□□ -1.27
VPS41YDR080W TSR3Q12094 313 aaKnown RBP7.04□□□□□ -1.28
VPS41YDR080W RPL17AP05740 184 aaKnown RBP6.88□□□□□ -1.31
VPS41YDR080W RPL17BP46990 184 aaKnown RBP6.88□□□□□ -1.31
VPS41YDR080W HAA1Q12753 694 aaKnown RBP6.79□□□□□ -1.32
VPS41YDR080W REB1P21538 810 aa6.77□□□□□ -1.33
VPS41YDR080W SPT21P35209 758 aa6.74□□□□□ -1.33
VPS41YDR080W MRPL32P25348 183 aa6.66□□□□□ -1.34
VPS41YDR080W TFA1P36100 482 aa6.63□□□□□ -1.35
VPS41YDR080W YKR023WP36119 530 aaKnown RBP6.6□□□□□ -1.35
VPS41YDR080W CDC27P38042 758 aa6.54□□□□□ -1.36
VPS41YDR080W RIM101P33400 625 aa6.52□□□□□ -1.37
VPS41YDR080W DCD1P06773 312 aa6.42□□□□□ -1.38
VPS41YDR080W TFC8Q12308 588 aa6.42□□□□□ -1.38
VPS41YDR080W HOP09932 586 aa6.41□□□□□ -1.38
VPS41YDR080W OXP1P28273 1286 aa6.35□□□□□ -1.39
VPS41YDR080W YGL015CP33199 130 aa6.33□□□□□ -1.4
VPS41YDR080W MAP2P38174 421 aaKnown RBP6.27□□□□□ -1.41
VPS41YDR080W BCH2P36122 765 aa6.23□□□□□ -1.41
VPS41YDR080W UBP10P53874 792 aaPredicted RBP6.22□□□□□ -1.41
VPS41YDR080W SCY1P53009 804 aa6.14□□□□□ -1.43
VPS41YDR080W YLR271WQ06152 274 aa6.08□□□□□ -1.44
VPS41YDR080W PTP3P40048 928 aa6.08□□□□□ -1.44
VPS41YDR080W YAH1Q12184 172 aaKnown RBP6.08□□□□□ -1.44
VPS41YDR080W YIL055CP40523 627 aaKnown RBP6.06□□□□□ -1.44
VPS41YDR080W EPS1P40557 701 aa6.06□□□□□ -1.44
VPS41YDR080W BDF1P35817 686 aa6.06□□□□□ -1.44
VPS41YDR080W RSM7P47150 247 aa6.05□□□□□ -1.44
VPS41YDR080W MON2P48563 1636 aaPredicted RBP6.03□□□□□ -1.44
VPS41YDR080W SLX5P32828 619 aaKnown RBP6□□□□□ -1.45
VPS41YDR080W AI2P03876 854 aa6□□□□□ -1.45
VPS41YDR080W SSP1P38871 571 aa5.99□□□□□ -1.45
VPS41YDR080W PSD2P53037 1138 aaKnown RBP5.97□□□□□ -1.45
VPS41YDR080W TGL3P40308 642 aa5.92□□□□□ -1.46
VPS41YDR080W CST9Q06032 482 aa5.9□□□□□ -1.46
VPS41YDR080W BBC1P47068 1157 aa5.89□□□□□ -1.47
VPS41YDR080W TIF4632P39936 914 aaKnown RBP5.88□□□□□ -1.47
VPS41YDR080W INO80P53115 1489 aa5.85□□□□□ -1.47
VPS41YDR080W ARP8Q12386 881 aaKnown RBP RIP-Chip data5.82□□□□□ -1.48not detected
VPS41YDR080W MGA2P40578 1113 aa5.82□□□□□ -1.48
VPS41YDR080W MRM1P25270 412 aa5.79□□□□□ -1.48
VPS41YDR080W MST1P07236 462 aa5.79□□□□□ -1.48
VPS41YDR080W NSR1P27476 414 aaKnown RBP RIP-Chip data5.78□□□□□ -1.48not detected
VPS41YDR080W RCR1P38212 213 aa5.76□□□□□ -1.49
VPS41YDR080W BUD31P25337 157 aaPredicted RBP5.76□□□□□ -1.49
VPS41YDR080W VPS29P38759 282 aa5.73□□□□□ -1.49
VPS41YDR080W YAP5P40574 245 aa5.68□□□□□ -1.5
VPS41YDR080W YOR238WQ08634 303 aa5.67□□□□□ -1.5
VPS41YDR080W STS1P38637 319 aa5.66□□□□□ -1.5
VPS41YDR080W RTG3P38165 486 aa5.66□□□□□ -1.5
VPS41YDR080W PIB1Q06651 286 aa5.64□□□□□ -1.51
VPS41YDR080W SWR1Q05471 1514 aa5.62□□□□□ -1.51
VPS41YDR080W RAM2P29703 316 aa5.61□□□□□ -1.51
VPS41YDR080W YBL029C-AQ3E756 94 aa5.61□□□□□ -1.51
VPS41YDR080W DNA2P38859 1522 aa5.61□□□□□ -1.51
VPS41YDR080W YMR1P47147 688 aaKnown RBP RIP-Chip data5.61□□□□□ -1.51not detected
VPS41YDR080W KOG1P38873 1557 aa5.61□□□□□ -1.51
VPS41YDR080W DBP1P24784 617 aaKnown RBP5.6□□□□□ -1.51
VPS41YDR080W YFR006WP43590 535 aa5.6□□□□□ -1.51
VPS41YDR080W VNX1P42839 908 aa5.57□□□□□ -1.52
VPS41YDR080W TY1B-DR4Q07793 1604 aa5.56□□□□□ -1.52
VPS41YDR080W UBP9P39967 754 aa5.55□□□□□ -1.52
VPS41YDR080W TCB3Q03640 1545 aaKnown RBP5.54□□□□□ -1.52
VPS41YDR080W VMA1P17255 1071 aaKnown RBP5.53□□□□□ -1.52
VPS41YDR080W SIS1P25294 352 aaKnown RBP5.51□□□□□ -1.53
VPS41YDR080W MAK11P20484 414 aaKnown RBP5.5□□□□□ -1.53
VPS41YDR080W WSC3Q12215 556 aa5.5□□□□□ -1.53
VPS41YDR080W EDS1P38073 919 aa5.49□□□□□ -1.53
VPS41YDR080W SAM3Q08986 587 aa5.49□□□□□ -1.53
VPS41YDR080W YOL036WQ08206 761 aa5.47□□□□□ -1.53
VPS41YDR080W GTT3P39996 337 aa5.46□□□□□ -1.54
VPS41YDR080W IOC2Q12072 812 aa5.46□□□□□ -1.54
VPS41YDR080W SET4P42948 560 aa5.44□□□□□ -1.54
VPS41YDR080W SPP1Q03012 353 aa5.44□□□□□ -1.54
VPS41YDR080W TIF11P38912 153 aaKnown RBP5.44□□□□□ -1.54
VPS41YDR080W COQ8P27697 501 aa5.43□□□□□ -1.54
VPS41YDR080W MSB4Q12317 492 aa5.42□□□□□ -1.54
VPS41YDR080W PTC3P34221 468 aaKnown RBP5.4□□□□□ -1.54
VPS41YDR080W MIF2P35201 549 aa5.4□□□□□ -1.55
VPS41YDR080W TRP5P00931 707 aaKnown RBP5.39□□□□□ -1.55
VPS41YDR080W NST1P53935 1240 aa5.39□□□□□ -1.55
VPS41YDR080W ULI1P43604 169 aa5.39□□□□□ -1.55
VPS41YDR080W LDB19Q12502 818 aa5.38□□□□□ -1.55
VPS41YDR080W AIR2Q12476 344 aaKnown RBP5.37□□□□□ -1.55
VPS41YDR080W SOL3P38858 249 aa5.37□□□□□ -1.55
VPS41YDR080W FKH1P40466 484 aa5.37□□□□□ -1.55
VPS41YDR080W GYP5Q12344 894 aa5.36□□□□□ -1.55
VPS41YDR080W DAN4P47179 1161 aa5.36□□□□□ -1.55
Retrieved 100 of 5,963 RNA–protein pairs in 12.9 ms