RNA–Protein interactions for RNA: YDL150W

RPC53, Transcript of RNA polymerase III subunit C53, yeast

Gene RPC53, Length 1,269 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPC53	YDL150W	MTC1	P47018	478 aa	Known RBP	17.54	■□□□□ 0.4
RPC53	YDL150W	DRS1	P32892	752 aa	Known RBP	16.51	■□□□□ 0.23
RPC53	YDL150W	FAP1	P53971	965 aa		15.39	■□□□□ 0.05
RPC53	YDL150W	PRI1	P10363	409 aa		14.67	□□□□□ -0.06
RPC53	YDL150W	AAD16	Q02895	342 aa		14.53	□□□□□ -0.08
RPC53	YDL150W	PRY3	P47033	881 aa		14.47	□□□□□ -0.09
RPC53	YDL150W	ISW2	Q08773	1120 aa		14.46	□□□□□ -0.09
RPC53	YDL150W	DIP2	Q12220	943 aa	Predicted RBP	14.43	□□□□□ -0.1
RPC53	YDL150W	RPG1	P38249	964 aa	Known RBP	14.27	□□□□□ -0.13
RPC53	YDL150W	AVT3	P36062	692 aa		14.03	□□□□□ -0.16
RPC53	YDL150W	RSE1	Q04693	1361 aa	Known RBP	13.9	□□□□□ -0.18
RPC53	YDL150W	BFR2	Q06631	534 aa	Known RBP	13.83	□□□□□ -0.2
RPC53	YDL150W	YCK3	P39962	524 aa		13.8	□□□□□ -0.2
RPC53	YDL150W	TSR3	Q12094	313 aa	Known RBP	13.79	□□□□□ -0.2
RPC53	YDL150W	HAA1	Q12753	694 aa	Known RBP	13.69	□□□□□ -0.22
RPC53	YDL150W	RPL17A	P05740	184 aa	Known RBP	13.41	□□□□□ -0.26
RPC53	YDL150W	RPL17B	P46990	184 aa	Known RBP	13.41	□□□□□ -0.26
RPC53	YDL150W	REB1	P21538	810 aa		13.31	□□□□□ -0.28
RPC53	YDL150W	MRPL32	P25348	183 aa		13.28	□□□□□ -0.28
RPC53	YDL150W	SPT21	P35209	758 aa		12.95	□□□□□ -0.34
RPC53	YDL150W	YKR023W	P36119	530 aa	Known RBP	12.72	□□□□□ -0.37
RPC53	YDL150W	YGL015C	P33199	130 aa		12.71	□□□□□ -0.37
RPC53	YDL150W	CDC27	P38042	758 aa		12.68	□□□□□ -0.38
RPC53	YDL150W	RIM101	P33400	625 aa		12.55	□□□□□ -0.4
RPC53	YDL150W	TFC8	Q12308	588 aa		12.46	□□□□□ -0.41
RPC53	YDL150W	TFA1	P36100	482 aa		12.42	□□□□□ -0.42
RPC53	YDL150W	HO	P09932	586 aa		12.38	□□□□□ -0.43
RPC53	YDL150W	UBP10	P53874	792 aa	Predicted RBP	12.36	□□□□□ -0.43
RPC53	YDL150W	DCD1	P06773	312 aa		12.29	□□□□□ -0.44
RPC53	YDL150W	MAP2	P38174	421 aa	Known RBP	12.24	□□□□□ -0.45
RPC53	YDL150W	OXP1	P28273	1286 aa		12.1	□□□□□ -0.47
RPC53	YDL150W	BCH2	P36122	765 aa		12.04	□□□□□ -0.48
RPC53	YDL150W	SCY1	P53009	804 aa		12.02	□□□□□ -0.49
RPC53	YDL150W	SLX5	P32828	619 aa	Known RBP	11.88	□□□□□ -0.51
RPC53	YDL150W	YIL055C	P40523	627 aa	Known RBP	11.85	□□□□□ -0.51
RPC53	YDL150W	PTP3	P40048	928 aa		11.81	□□□□□ -0.52
RPC53	YDL150W	TIF4632	P39936	914 aa	Known RBP	11.79	□□□□□ -0.52
RPC53	YDL150W	TGL3	P40308	642 aa		11.78	□□□□□ -0.52
RPC53	YDL150W	EPS1	P40557	701 aa		11.76	□□□□□ -0.53
RPC53	YDL150W	RSM7	P47150	247 aa		11.73	□□□□□ -0.53
RPC53	YDL150W	BDF1	P35817	686 aa		11.71	□□□□□ -0.53
RPC53	YDL150W	YAH1	Q12184	172 aa	Known RBP	11.66	□□□□□ -0.54
RPC53	YDL150W	AI2	P03876	854 aa		11.59	□□□□□ -0.55
RPC53	YDL150W	BUD31	P25337	157 aa	Predicted RBP	11.58	□□□□□ -0.56
RPC53	YDL150W	BBC1	P47068	1157 aa		11.58	□□□□□ -0.56
RPC53	YDL150W	YLR271W	Q06152	274 aa		11.58	□□□□□ -0.56
RPC53	YDL150W	SSP1	P38871	571 aa		11.49	□□□□□ -0.57
RPC53	YDL150W	PSD2	P53037	1138 aa	Known RBP	11.42	□□□□□ -0.58
RPC53	YDL150W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	11.41	□□□□□ -0.58	not detected
RPC53	YDL150W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	11.38	□□□□□ -0.59	not detected
RPC53	YDL150W	MST1	P07236	462 aa		11.37	□□□□□ -0.59
RPC53	YDL150W	UBP9	P39967	754 aa		11.31	□□□□□ -0.6
RPC53	YDL150W	YOR238W	Q08634	303 aa		11.27	□□□□□ -0.61
RPC53	YDL150W	YAP5	P40574	245 aa		11.23	□□□□□ -0.61
RPC53	YDL150W	MGA2	P40578	1113 aa		11.2	□□□□□ -0.62
RPC53	YDL150W	MRM1	P25270	412 aa		11.16	□□□□□ -0.62
RPC53	YDL150W	CST9	Q06032	482 aa		11.15	□□□□□ -0.62
RPC53	YDL150W	YBL029C-A	Q3E756	94 aa		11.02	□□□□□ -0.65
RPC53	YDL150W	RTG3	P38165	486 aa		10.98	□□□□□ -0.65
RPC53	YDL150W	VPS29	P38759	282 aa		10.98	□□□□□ -0.65
RPC53	YDL150W	SIS1	P25294	352 aa	Known RBP	10.97	□□□□□ -0.65
RPC53	YDL150W	VNX1	P42839	908 aa		10.97	□□□□□ -0.65
RPC53	YDL150W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	10.94	□□□□□ -0.66	not detected
RPC53	YDL150W	GTT3	P39996	337 aa		10.91	□□□□□ -0.66
RPC53	YDL150W	PIB1	Q06651	286 aa		10.88	□□□□□ -0.67
RPC53	YDL150W	RCR1	P38212	213 aa		10.86	□□□□□ -0.67
RPC53	YDL150W	WSC3	Q12215	556 aa		10.86	□□□□□ -0.67
RPC53	YDL150W	DBP1	P24784	617 aa	Known RBP	10.85	□□□□□ -0.67
RPC53	YDL150W	STS1	P38637	319 aa		10.83	□□□□□ -0.68
RPC53	YDL150W	SPP1	Q03012	353 aa		10.83	□□□□□ -0.68
RPC53	YDL150W	TIF11	P38912	153 aa	Known RBP	10.8	□□□□□ -0.68
RPC53	YDL150W	YFR006W	P43590	535 aa		10.77	□□□□□ -0.69
RPC53	YDL150W	MSB4	Q12317	492 aa		10.76	□□□□□ -0.69
RPC53	YDL150W	VMA1	P17255	1071 aa	Known RBP	10.75	□□□□□ -0.69
RPC53	YDL150W	SAM3	Q08986	587 aa		10.74	□□□□□ -0.69
RPC53	YDL150W	YOL036W	Q08206	761 aa		10.7	□□□□□ -0.7
RPC53	YDL150W	IOC2	Q12072	812 aa		10.69	□□□□□ -0.7
RPC53	YDL150W	ULI1	P43604	169 aa		10.67	□□□□□ -0.7
RPC53	YDL150W	EAP1	P36041	632 aa	Known RBP	10.66	□□□□□ -0.7
RPC53	YDL150W	RAM2	P29703	316 aa		10.65	□□□□□ -0.7
RPC53	YDL150W	FKH1	P40466	484 aa		10.65	□□□□□ -0.7
RPC53	YDL150W	SET4	P42948	560 aa		10.62	□□□□□ -0.71
RPC53	YDL150W	MAK11	P20484	414 aa	Known RBP	10.61	□□□□□ -0.71
RPC53	YDL150W	AIR2	Q12476	344 aa	Known RBP	10.61	□□□□□ -0.71
RPC53	YDL150W	LDB19	Q12502	818 aa		10.6	□□□□□ -0.71
RPC53	YDL150W	TRP5	P00931	707 aa	Known RBP	10.56	□□□□□ -0.72
RPC53	YDL150W	ABP1	P15891	592 aa	Known RBP	10.56	□□□□□ -0.72
RPC53	YDL150W	GYP5	Q12344	894 aa		10.52	□□□□□ -0.73
RPC53	YDL150W	YNL035C	P53962	389 aa	Known RBP	10.47	□□□□□ -0.73
RPC53	YDL150W	RTG1	P32607	177 aa		10.46	□□□□□ -0.73
RPC53	YDL150W	EDS1	P38073	919 aa		10.46	□□□□□ -0.73
RPC53	YDL150W	SEC61	P32915	480 aa		10.44	□□□□□ -0.74
RPC53	YDL150W	HTA1	P04911	132 aa	Known RBP	10.42	□□□□□ -0.74
RPC53	YDL150W	HTA2	P04912	132 aa		10.42	□□□□□ -0.74
RPC53	YDL150W	COQ8	P27697	501 aa		10.42	□□□□□ -0.74
RPC53	YDL150W	PTC3	P34221	468 aa	Known RBP	10.42	□□□□□ -0.74
RPC53	YDL150W	MIF2	P35201	549 aa		10.42	□□□□□ -0.74
RPC53	YDL150W	JIP4	Q03361	876 aa		10.42	□□□□□ -0.74
RPC53	YDL150W	YJL171C	P46992	396 aa		10.41	□□□□□ -0.74
RPC53	YDL150W	DAN4	P47179	1161 aa		10.4	□□□□□ -0.74

Retrieved 100 of 5,963 RNA–protein pairs in 13.8 ms