RNA–Protein interactions for RNA: RDN18-1

RDN18-1, Transcript of 18S ribosomal RNA (18S rRNA), yeastyeast

Gene RDN18-1, Length 1,800 nt, Biotype rRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RDN18-1RDN18-1 SGS1P35187 1447 aa18.2■□□□□ 0.5
RDN18-1RDN18-1 INO80P53115 1489 aa17.75■□□□□ 0.43
RDN18-1RDN18-1 SPA2P23201 1466 aaKnown RBP17.51■□□□□ 0.39
RDN18-1RDN18-1 TCB3Q03640 1545 aaKnown RBP17.5■□□□□ 0.39
RDN18-1RDN18-1 SSN2P38931 1420 aa17.47■□□□□ 0.39
RDN18-1RDN18-1 TY1B-DR4Q07793 1604 aa17.37■□□□□ 0.37
RDN18-1RDN18-1 MON2P48563 1636 aaPredicted RBP17.15■□□□□ 0.34
RDN18-1RDN18-1 HSL1P34244 1518 aa17.06■□□□□ 0.32
RDN18-1RDN18-1 SPT6P23615 1451 aaKnown RBP16.97■□□□□ 0.31
RDN18-1RDN18-1 SWR1Q05471 1514 aa16.89■□□□□ 0.29
RDN18-1RDN18-1 DRS1P32892 752 aaKnown RBP16.86■□□□□ 0.29
RDN18-1RDN18-1 HIR3P47171 1648 aa16.76■□□□□ 0.27
RDN18-1RDN18-1 XRN1P22147 1528 aaKnown RBP16.65■□□□□ 0.26
RDN18-1RDN18-1 REV3P14284 1504 aa16.44■□□□□ 0.22
RDN18-1RDN18-1 DNA2P38859 1522 aa16.34■□□□□ 0.21
RDN18-1RDN18-1 SIN3P22579 1536 aa16.32■□□□□ 0.2
RDN18-1RDN18-1 THO2P53552 1597 aaKnown RBP16.29■□□□□ 0.2
RDN18-1RDN18-1 SSK2P53599 1579 aa16.25■□□□□ 0.19
RDN18-1RDN18-1 KOG1P38873 1557 aa16.24■□□□□ 0.19
RDN18-1RDN18-1 TAF2P23255 1407 aa16.22■□□□□ 0.19
RDN18-1RDN18-1 ESP1Q03018 1630 aa16.12■□□□□ 0.17
RDN18-1RDN18-1 BUD4P47136 1447 aa16.06■□□□□ 0.16
RDN18-1RDN18-1 ATG2P53855 1592 aa16.03■□□□□ 0.16
RDN18-1RDN18-1 ECM5Q03214 1411 aa16.02■□□□□ 0.16
RDN18-1RDN18-1 MYO2P19524 1574 aaKnown RBP15.99■□□□□ 0.15
RDN18-1RDN18-1 SKI3P17883 1432 aaKnown RBP15.9■□□□□ 0.14
RDN18-1RDN18-1 PEP1P32319 1579 aa15.86■□□□□ 0.13
RDN18-1RDN18-1 YPK9Q12697 1472 aa15.82■□□□□ 0.12
RDN18-1RDN18-1 MDS3P53094 1487 aa15.8■□□□□ 0.12
RDN18-1RDN18-1 POL1P13382 1468 aa15.8■□□□□ 0.12
RDN18-1RDN18-1 STU1P38198 1513 aa15.76■□□□□ 0.11
RDN18-1RDN18-1 CHD1P32657 1468 aa15.73■□□□□ 0.11
RDN18-1RDN18-1 MMS22Q06164 1454 aa15.73■□□□□ 0.11
RDN18-1RDN18-1 SCC2Q04002 1493 aa15.7■□□□□ 0.1
RDN18-1RDN18-1 BPT1P14772 1559 aa15.63■□□□□ 0.09
RDN18-1RDN18-1 RKR1Q04781 1562 aa15.63■□□□□ 0.09
RDN18-1RDN18-1 RPO31P04051 1460 aa15.6■□□□□ 0.09
RDN18-1RDN18-1 YOR1P53049 1477 aa15.56■□□□□ 0.08
RDN18-1RDN18-1 YTA7P40340 1379 aa15.55■□□□□ 0.08
RDN18-1RDN18-1 UFD4P33202 1483 aa15.52■□□□□ 0.08
RDN18-1RDN18-1 TY2B-LR1P0C2J3 1770 aa15.51■□□□□ 0.07
RDN18-1RDN18-1 TY2B-FP0CX63 1770 aa15.51■□□□□ 0.07
RDN18-1RDN18-1 TY2B-GR2P0CX64 1770 aa15.51■□□□□ 0.07
RDN18-1RDN18-1 TY2B-CP25384 1770 aa15.51■□□□□ 0.07
RDN18-1RDN18-1 TY2B-DR2Q03494 1770 aa15.51■□□□□ 0.07
RDN18-1RDN18-1 TY1B-DR1Q03855 1755 aa15.51■□□□□ 0.07
RDN18-1RDN18-1 TY2B-DR3Q07791 1770 aaKnown RBP15.51■□□□□ 0.07
RDN18-1RDN18-1 TY2B-OR1Q12113 1770 aa15.51■□□□□ 0.07
RDN18-1RDN18-1 TY2B-DR1Q12472 1770 aa15.51■□□□□ 0.07
RDN18-1RDN18-1 TY2B-OR2Q12501 1770 aa15.51■□□□□ 0.07
RDN18-1RDN18-1 YCF1P39109 1515 aaKnown RBP15.5■□□□□ 0.07
RDN18-1RDN18-1 TOP2P06786 1428 aaKnown RBP15.49■□□□□ 0.07
RDN18-1RDN18-1 TY1B-DR3Q99231 1755 aa15.44■□□□□ 0.06
RDN18-1RDN18-1 SMC4Q12267 1418 aa15.42■□□□□ 0.06
RDN18-1RDN18-1 MYO4P32492 1471 aa15.42■□□□□ 0.06
RDN18-1RDN18-1 SAS10Q12136 610 aaPredicted RBP15.39■□□□□ 0.05
RDN18-1RDN18-1 TY2B-BQ12491 1770 aa15.37■□□□□ 0.05
RDN18-1RDN18-1 SNQ2P32568 1501 aaKnown RBP15.25■□□□□ 0.03
RDN18-1RDN18-1 TY1B-HO13535 1793 aa15.25■□□□□ 0.03
RDN18-1RDN18-1 TY1B-DR5P0C2I2 1755 aa15.25■□□□□ 0.03
RDN18-1RDN18-1 TY1B-DR6P0C2I3 1755 aa15.25■□□□□ 0.03
RDN18-1RDN18-1 TY1B-LR2P0C2I5 1755 aa15.25■□□□□ 0.03
RDN18-1RDN18-1 TY1B-LR3P0C2I6 1755 aaKnown RBP15.25■□□□□ 0.03
RDN18-1RDN18-1 TY1B-PR1P0C2I9 1755 aaKnown RBP15.25■□□□□ 0.03
RDN18-1RDN18-1 TY1B-PR2P0C2J0 1756 aa15.25■□□□□ 0.03
RDN18-1RDN18-1 TY1B-PR3P0C2J1 1755 aaKnown RBP15.25■□□□□ 0.03
RDN18-1RDN18-1 TY1B-JR1P47098 1755 aa15.25■□□□□ 0.03
RDN18-1RDN18-1 TY1B-ML2Q03434 1755 aaKnown RBP15.25■□□□□ 0.03
RDN18-1RDN18-1 TY1B-ER1Q03612 1755 aa15.25■□□□□ 0.03
RDN18-1RDN18-1 TY1B-ML1Q04711 1755 aaKnown RBP15.25■□□□□ 0.03
RDN18-1RDN18-1 TY1B-BRQ12193 1756 aa15.25■□□□□ 0.03
RDN18-1RDN18-1 TY1B-GR2Q12269 1755 aa15.25■□□□□ 0.03
RDN18-1RDN18-1 TY1B-OLQ12273 1755 aa15.25■□□□□ 0.03
RDN18-1RDN18-1 TY1B-GR3Q12316 1755 aa15.25■□□□□ 0.03
RDN18-1RDN18-1 TY1B-PLQ12414 1755 aaKnown RBP15.25■□□□□ 0.03
RDN18-1RDN18-1 TY1B-ORQ92393 1755 aa15.25■□□□□ 0.03
RDN18-1RDN18-1 RSE1Q04693 1361 aaKnown RBP15.21■□□□□ 0.03
RDN18-1RDN18-1 TRM732Q03496 1420 aa15.18■□□□□ 0.02
RDN18-1RDN18-1 STH1P32597 1359 aa15.17■□□□□ 0.02
RDN18-1RDN18-1 MLP2P40457 1679 aa15.17■□□□□ 0.02
RDN18-1RDN18-1 SPP41P38904 1435 aa15.13■□□□□ 0.01
RDN18-1RDN18-1 CDC25P04821 1589 aa15.1■□□□□ 0.01
RDN18-1RDN18-1 PDR15Q04182 1529 aaKnown RBP15.1■□□□□ 0.01
RDN18-1RDN18-1 ULS1Q08562 1619 aa15.07■□□□□ 0
RDN18-1RDN18-1 RQC2Q12532 1038 aaKnown RBP15.07■□□□□ 0
RDN18-1RDN18-1 TAF7Q05021 590 aa15.06■□□□□ 0
RDN18-1RDN18-1 VTH1P40438 1549 aa15.03■□□□□ -0
RDN18-1RDN18-1 VTH2P40890 1549 aa15.03■□□□□ -0
RDN18-1RDN18-1 TSC11P40061 1430 aa15.02■□□□□ -0
RDN18-1RDN18-1 TY1B-JR2P47100 1755 aaKnown RBP15.01□□□□□ -0.01
RDN18-1RDN18-1 TY1B-ER2Q03619 1755 aa15.01□□□□□ -0.01
RDN18-1RDN18-1 TY1B-MR1Q04214 1755 aa15.01□□□□□ -0.01
RDN18-1RDN18-1 TY1B-MR2Q04670 1755 aaKnown RBP15.01□□□□□ -0.01
RDN18-1RDN18-1 TY1B-LR1Q12088 1755 aaKnown RBP15.01□□□□□ -0.01
RDN18-1RDN18-1 TY1B-NL1Q12112 1755 aa15.01□□□□□ -0.01
RDN18-1RDN18-1 TY1B-GR1Q12141 1755 aa15.01□□□□□ -0.01
RDN18-1RDN18-1 TY1B-BLQ12490 1755 aa15.01□□□□□ -0.01
RDN18-1RDN18-1 IKI3Q06706 1349 aaKnown RBP15.01□□□□□ -0.01
RDN18-1RDN18-1 PAN1P32521 1480 aa15□□□□□ -0.01
RDN18-1RDN18-1 ESC1Q03661 1658 aaKnown RBP14.99□□□□□ -0.01
Retrieved 100 of 5,963 RNA–protein pairs in 12.4 ms