RNA–Protein interactions for RNA: ENST00000642072.1

LINC00339-212, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 338 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-212ENST00000642072 NISCHQ9Y2I1 1504 aa22.04■■□□□ 1.12
LINC00339-212ENST00000642072 ABCC9O60706 1549 aa20.01■□□□□ 0.79
LINC00339-212ENST00000642072 CCDC180Q9P1Z9 1646 aa19.85■□□□□ 0.77
LINC00339-212ENST00000642072 DNAJC5BQ9UF47 199 aa18.99■□□□□ 0.63
LINC00339-212ENST00000642072 RB1CC1Q8TDY2 1594 aa18.96■□□□□ 0.63
LINC00339-212ENST00000642072 NACADO15069 1562 aa18.81■□□□□ 0.6
LINC00339-212ENST00000642072 PABPN1Q86U42 306 aaKnown RBP eCLIP18.58■□□□□ 0.56
LINC00339-212ENST00000642072 MYO15BQ96JP2 1530 aa18.54■□□□□ 0.56
LINC00339-212ENST00000642072 UNC13AQ9UPW8 1703 aa18.54■□□□□ 0.56
LINC00339-212ENST00000642072 DCAF8L2P0C7V8 631 aa18.53■□□□□ 0.56
LINC00339-212ENST00000642072 BICRAQ9NZM4 1560 aa18.48■□□□□ 0.55
LINC00339-212ENST00000642072 ZCCHC6Q5VYS8 1495 aaKnown RBP18.25■□□□□ 0.51
LINC00339-212ENST00000642072 DCAF1Q9Y4B6 1507 aa18.23■□□□□ 0.51
LINC00339-212ENST00000642072 SHROOM4Q9ULL8 1493 aa18.21■□□□□ 0.51
LINC00339-212ENST00000642072 CC2D2AQ9P2K1 1620 aa18.08■□□□□ 0.48
LINC00339-212ENST00000642072 CECR2Q9BXF3 1484 aa18.06■□□□□ 0.48
LINC00339-212ENST00000642072 SCRIBQ14160 1630 aa18.05■□□□□ 0.48
LINC00339-212ENST00000642072 EIF4G1Q04637 1599 aaKnown RBP18.01■□□□□ 0.47
LINC00339-212ENST00000642072 DNAJC5Q9H3Z4 198 aa17.55■□□□□ 0.4
LINC00339-212ENST00000642072 NCAPD3P42695 1498 aa17.39■□□□□ 0.37
LINC00339-212ENST00000642072 CUX2O14529 1486 aa17.34■□□□□ 0.37
LINC00339-212ENST00000642072 ATAD2BQ9ULI0 1458 aa17.31■□□□□ 0.36
LINC00339-212ENST00000642072 ERCC6Q03468 1493 aa17.24■□□□□ 0.35
LINC00339-212ENST00000642072 HMGXB3Q12766 1538 aa17.24■□□□□ 0.35
LINC00339-212ENST00000642072 SMARCA4P51532 1647 aa17.22■□□□□ 0.35
LINC00339-212ENST00000642072 SMARCA2P51531 1590 aa17.22■□□□□ 0.35
LINC00339-212ENST00000642072 NESP48681 1621 aa17.16■□□□□ 0.34
LINC00339-212ENST00000642072 PEG3Q9GZU2 1588 aa17.11■□□□□ 0.33
LINC00339-212ENST00000642072 BAZ1AQ9NRL2 1556 aaPredicted RBP17.11■□□□□ 0.33
LINC00339-212ENST00000642072 BAZ1BQ9UIG0 1483 aaKnown RBP17.09■□□□□ 0.33
LINC00339-212ENST00000642072 THOC2Q8NI27 1593 aaKnown RBP17.04■□□□□ 0.32
LINC00339-212ENST00000642072 LAMC3Q9Y6N6 1575 aa16.99■□□□□ 0.31
LINC00339-212ENST00000642072 MROH2BQ7Z745 1585 aa16.98■□□□□ 0.31
LINC00339-212ENST00000642072 KIF21AQ7Z4S6 1674 aa16.9■□□□□ 0.3
LINC00339-212ENST00000642072 PDS5BQ9NTI5 1447 aa16.88■□□□□ 0.29
LINC00339-212ENST00000642072 CADPSQ9ULU8 1353 aa16.83■□□□□ 0.28
LINC00339-212ENST00000642072 WDR62O43379 1518 aa16.77■□□□□ 0.28
LINC00339-212ENST00000642072 MRC2Q9UBG0 1479 aa16.77■□□□□ 0.28
LINC00339-212ENST00000642072 WIZO95785 1651 aa16.73■□□□□ 0.27
LINC00339-212ENST00000642072 CEP164Q9UPV0 1460 aa16.65■□□□□ 0.26
LINC00339-212ENST00000642072 FANCD2Q9BXW9 1451 aa16.63■□□□□ 0.25
LINC00339-212ENST00000642072 CFTRP13569 1480 aa16.62■□□□□ 0.25
LINC00339-212ENST00000642072 TRIM41Q8WV44 630 aa16.61■□□□□ 0.25
LINC00339-212ENST00000642072 RSF1Q96T23 1441 aaPredicted RBP16.57■□□□□ 0.24
LINC00339-212ENST00000642072 TOP2AP11388 1531 aaKnown RBP16.54■□□□□ 0.24
LINC00339-212ENST00000642072 URB2Q14146 1524 aaKnown RBP16.54■□□□□ 0.24
LINC00339-212ENST00000642072 OSCARQ8IYS5 282 aa16.47■□□□□ 0.23
LINC00339-212ENST00000642072 PRDM2Q13029 1718 aa16.37■□□□□ 0.21
LINC00339-212ENST00000642072 ZNF608Q9ULD9 1512 aaPredicted RBP16.36■□□□□ 0.21
LINC00339-212ENST00000642072 CCDC88BA6NC98 1476 aa16.35■□□□□ 0.21
LINC00339-212ENST00000642072 IFT140Q96RY7 1462 aa16.35■□□□□ 0.21
LINC00339-212ENST00000642072 RIMBP3CA6NJZ7 1639 aa16.31■□□□□ 0.2
LINC00339-212ENST00000642072 RIMBP3BA6NNM3 1639 aa16.31■□□□□ 0.2
LINC00339-212ENST00000642072 RIMBP3Q9UFD9 1639 aa16.31■□□□□ 0.2
LINC00339-212ENST00000642072 TOPBP1Q92547 1522 aa16.3■□□□□ 0.2
LINC00339-212ENST00000642072 ARHGEF11O15085 1522 aa16.26■□□□□ 0.19
LINC00339-212ENST00000642072 EIF4G3O43432 1585 aaKnown RBP16.24■□□□□ 0.19
LINC00339-212ENST00000642072 ABCC8Q09428 1581 aa16.22■□□□□ 0.19
LINC00339-212ENST00000642072 DNMBPQ6XZF7 1577 aa16.22■□□□□ 0.19
LINC00339-212ENST00000642072 TARBP1Q13395 1621 aaKnown RBP16.19■□□□□ 0.18
LINC00339-212ENST00000642072 AQRO60306 1485 aaKnown RBP eCLIP16.16■□□□□ 0.18
LINC00339-212ENST00000642072 POLA1P09884 1462 aaPredicted RBP16.14■□□□□ 0.17
LINC00339-212ENST00000642072 CHD1O14646 1710 aa16.12■□□□□ 0.17
LINC00339-212ENST00000642072 ARAP1Q96P48 1450 aa16.1■□□□□ 0.17
LINC00339-212ENST00000642072 CYB5RLQ6IPT4 315 aa16.08■□□□□ 0.16
LINC00339-212ENST00000642072 RAD54L2Q9Y4B4 1467 aa16.06■□□□□ 0.16
LINC00339-212ENST00000642072 TDRD9Q8NDG6 1382 aaKnown RBP16.02■□□□□ 0.16
LINC00339-212ENST00000642072 SOGA1O94964 1423 aa16.02■□□□□ 0.15
LINC00339-212ENST00000642072 CLASP1Q7Z460 1538 aa16■□□□□ 0.15
LINC00339-212ENST00000642072 FBLN2P98095 1184 aa16■□□□□ 0.15
LINC00339-212ENST00000642072 WDR97A6NE52 1622 aa16■□□□□ 0.15
LINC00339-212ENST00000642072 SNAPC4Q5SXM2 1469 aa15.99■□□□□ 0.15
LINC00339-212ENST00000642072 FGD5Q6ZNL6 1462 aa15.99■□□□□ 0.15
LINC00339-212ENST00000642072 CUX1P39880 1505 aa15.97■□□□□ 0.15
LINC00339-212ENST00000642072 MAGI1Q96QZ7 1491 aaPredicted RBP15.95■□□□□ 0.14
LINC00339-212ENST00000642072 GRIN2BQ13224 1484 aa15.91■□□□□ 0.14
LINC00339-212ENST00000642072 TRHP20396 242 aaPredicted RBP15.91■□□□□ 0.14
LINC00339-212ENST00000642072 SYNJ1O43426 1573 aa15.91■□□□□ 0.14
LINC00339-212ENST00000642072 SYNJ2O15056 1496 aa15.9■□□□□ 0.14
LINC00339-212ENST00000642072 CHMP7Q8WUX9 453 aaPredicted RBP15.88■□□□□ 0.13
LINC00339-212ENST00000642072 GAPVD1Q14C86 1478 aa15.83■□□□□ 0.12
LINC00339-212ENST00000642072 ABCA10Q8WWZ4 1543 aa15.82■□□□□ 0.12
LINC00339-212ENST00000642072 ABCA5Q8WWZ7 1642 aa15.82■□□□□ 0.12
LINC00339-212ENST00000642072 PBRM1Q86U86 1689 aa15.82■□□□□ 0.12
LINC00339-212ENST00000642072 GRIN2AQ12879 1464 aa15.72■□□□□ 0.11
LINC00339-212ENST00000642072 ERCC6L2Q5T890 1561 aa15.72■□□□□ 0.11
LINC00339-212ENST00000642072 NUP160Q12769 1436 aa15.71■□□□□ 0.11
LINC00339-212ENST00000642072 ADAMTS12P58397 1594 aa15.7■□□□□ 0.1
LINC00339-212ENST00000642072 CEP170Q5SW79 1584 aa15.68■□□□□ 0.1
LINC00339-212ENST00000642072 WRNQ14191 1432 aaPredicted RBP eCLIP15.68■□□□□ 0.1
LINC00339-212ENST00000642072 SHROOM2Q13796 1616 aa15.65■□□□□ 0.1
LINC00339-212ENST00000642072 TOP2BQ02880 1626 aa15.65■□□□□ 0.1
LINC00339-212ENST00000642072 BIVM-ERCC5R4GMW8 1640 aa15.65■□□□□ 0.1
LINC00339-212ENST00000642072 FHAD1B1AJZ9 1412 aa15.63■□□□□ 0.09
LINC00339-212ENST00000642072 ERICH3Q5RHP9 1530 aa15.6■□□□□ 0.09
LINC00339-212ENST00000642072 SUPT5HO00267 1087 aaKnown RBP15.57■□□□□ 0.08
LINC00339-212ENST00000642072 AEBP2Q6ZN18 517 aaPredicted RBP15.56■□□□□ 0.08
LINC00339-212ENST00000642072 PRG4Q92954 1404 aaPredicted RBP15.52■□□□□ 0.08
LINC00339-212ENST00000642072 KIF13AQ9H1H9 1805 aa15.51■□□□□ 0.07
LINC00339-212ENST00000642072 RUSC2Q8N2Y8 1516 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms