RNA–Protein interactions for RNA: ENST00000641939.1

PHGDH-231, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 540 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-231ENST00000641939 NISCHQ9Y2I1 1504 aa36.84■■■■□ 3.49
PHGDH-231ENST00000641939 CCDC180Q9P1Z9 1646 aa32.88■■■□□ 2.85
PHGDH-231ENST00000641939 ABCC9O60706 1549 aa32.28■■■□□ 2.76
PHGDH-231ENST00000641939 RB1CC1Q8TDY2 1594 aa31■■■□□ 2.55
PHGDH-231ENST00000641939 NACADO15069 1562 aa30.92■■■□□ 2.54
PHGDH-231ENST00000641939 DCAF8L2P0C7V8 631 aa30.83■■■□□ 2.53
PHGDH-231ENST00000641939 MYO15BQ96JP2 1530 aa30.67■■■□□ 2.5
PHGDH-231ENST00000641939 ZCCHC6Q5VYS8 1495 aaKnown RBP30.64■■■□□ 2.5
PHGDH-231ENST00000641939 DCAF1Q9Y4B6 1507 aa30.47■■■□□ 2.47
PHGDH-231ENST00000641939 UNC13AQ9UPW8 1703 aa30.36■■■□□ 2.45
PHGDH-231ENST00000641939 PABPN1Q86U42 306 aaKnown RBP eCLIP30.12■■■□□ 2.41
PHGDH-231ENST00000641939 BICRAQ9NZM4 1560 aa30.07■■■□□ 2.4
PHGDH-231ENST00000641939 SCRIBQ14160 1630 aa29.96■■■□□ 2.39
PHGDH-231ENST00000641939 DNAJC5BQ9UF47 199 aa29.77■■■□□ 2.36
PHGDH-231ENST00000641939 SHROOM4Q9ULL8 1493 aa29.74■■■□□ 2.35
PHGDH-231ENST00000641939 EIF4G1Q04637 1599 aaKnown RBP29.28■■■□□ 2.28
PHGDH-231ENST00000641939 CC2D2AQ9P2K1 1620 aa29.23■■■□□ 2.27
PHGDH-231ENST00000641939 CECR2Q9BXF3 1484 aa29.04■■■□□ 2.24
PHGDH-231ENST00000641939 SMARCA4P51532 1647 aa28.64■■■□□ 2.18
PHGDH-231ENST00000641939 BAZ1AQ9NRL2 1556 aaPredicted RBP28.57■■■□□ 2.16
PHGDH-231ENST00000641939 NCAPD3P42695 1498 aa28.51■■■□□ 2.15
PHGDH-231ENST00000641939 ATAD2BQ9ULI0 1458 aa28.51■■■□□ 2.15
PHGDH-231ENST00000641939 SMARCA2P51531 1590 aa28.48■■■□□ 2.15
PHGDH-231ENST00000641939 MROH2BQ7Z745 1585 aa28.38■■■□□ 2.13
PHGDH-231ENST00000641939 HMGXB3Q12766 1538 aa28.38■■■□□ 2.13
PHGDH-231ENST00000641939 PEG3Q9GZU2 1588 aa28.36■■■□□ 2.13
PHGDH-231ENST00000641939 BAZ1BQ9UIG0 1483 aaKnown RBP28.27■■■□□ 2.12
PHGDH-231ENST00000641939 WIZO95785 1651 aa28.1■■■□□ 2.09
PHGDH-231ENST00000641939 RSF1Q96T23 1441 aaPredicted RBP27.98■■■□□ 2.07
PHGDH-231ENST00000641939 NESP48681 1621 aa27.89■■■□□ 2.05
PHGDH-231ENST00000641939 ERCC6Q03468 1493 aa27.85■■■□□ 2.05
PHGDH-231ENST00000641939 LAMC3Q9Y6N6 1575 aa27.82■■■□□ 2.04
PHGDH-231ENST00000641939 TOP2AP11388 1531 aaKnown RBP27.77■■■□□ 2.04
PHGDH-231ENST00000641939 CADPSQ9ULU8 1353 aa27.67■■■□□ 2.02
PHGDH-231ENST00000641939 PDS5BQ9NTI5 1447 aa27.62■■■□□ 2.01
PHGDH-231ENST00000641939 CUX2O14529 1486 aa27.62■■■□□ 2.01
PHGDH-231ENST00000641939 KIF21AQ7Z4S6 1674 aa27.6■■■□□ 2.01
PHGDH-231ENST00000641939 THOC2Q8NI27 1593 aaKnown RBP27.53■■■□□ 2
PHGDH-231ENST00000641939 CFTRP13569 1480 aa27.47■■□□□ 1.99
PHGDH-231ENST00000641939 CCDC88BA6NC98 1476 aa27.44■■□□□ 1.98
PHGDH-231ENST00000641939 FANCD2Q9BXW9 1451 aa27.36■■□□□ 1.97
PHGDH-231ENST00000641939 CEP164Q9UPV0 1460 aa27.35■■□□□ 1.97
PHGDH-231ENST00000641939 PRDM2Q13029 1718 aa27.35■■□□□ 1.97
PHGDH-231ENST00000641939 MRC2Q9UBG0 1479 aa27.34■■□□□ 1.97
PHGDH-231ENST00000641939 WDR62O43379 1518 aa27.26■■□□□ 1.96
PHGDH-231ENST00000641939 SUPT5HO00267 1087 aaKnown RBP27.14■■□□□ 1.94
PHGDH-231ENST00000641939 URB2Q14146 1524 aaKnown RBP27.1■■□□□ 1.93
PHGDH-231ENST00000641939 DNAJC5Q9H3Z4 198 aa27.09■■□□□ 1.93
PHGDH-231ENST00000641939 TOPBP1Q92547 1522 aa26.91■■□□□ 1.9
PHGDH-231ENST00000641939 ABCC8Q09428 1581 aa26.9■■□□□ 1.9
PHGDH-231ENST00000641939 DNMBPQ6XZF7 1577 aa26.88■■□□□ 1.89
PHGDH-231ENST00000641939 IFT140Q96RY7 1462 aa26.77■■□□□ 1.88
PHGDH-231ENST00000641939 ZNF608Q9ULD9 1512 aaPredicted RBP26.67■■□□□ 1.86
PHGDH-231ENST00000641939 POLA1P09884 1462 aaPredicted RBP26.67■■□□□ 1.86
PHGDH-231ENST00000641939 TARBP1Q13395 1621 aaKnown RBP26.65■■□□□ 1.86
PHGDH-231ENST00000641939 CUX1P39880 1505 aa26.64■■□□□ 1.85
PHGDH-231ENST00000641939 EIF4G3O43432 1585 aaKnown RBP26.58■■□□□ 1.85
PHGDH-231ENST00000641939 FGD5Q6ZNL6 1462 aa26.57■■□□□ 1.84
PHGDH-231ENST00000641939 SOGA1O94964 1423 aa26.56■■□□□ 1.84
PHGDH-231ENST00000641939 RAD54L2Q9Y4B4 1467 aa26.55■■□□□ 1.84
PHGDH-231ENST00000641939 AQRO60306 1485 aaKnown RBP eCLIP26.49■■□□□ 1.833e-7■■■□□ 16
PHGDH-231ENST00000641939 WDR97A6NE52 1622 aa26.43■■□□□ 1.82
PHGDH-231ENST00000641939 OSCARQ8IYS5 282 aa26.43■■□□□ 1.82
PHGDH-231ENST00000641939 TDRD9Q8NDG6 1382 aaKnown RBP26.41■■□□□ 1.82
PHGDH-231ENST00000641939 WRNQ14191 1432 aaPredicted RBP eCLIP26.39■■□□□ 1.82
PHGDH-231ENST00000641939 BIVM-ERCC5R4GMW8 1640 aa26.39■■□□□ 1.82
PHGDH-231ENST00000641939 TOP2BQ02880 1626 aa26.39■■□□□ 1.81
PHGDH-231ENST00000641939 SYNJ1O43426 1573 aa26.36■■□□□ 1.81
PHGDH-231ENST00000641939 CHD1O14646 1710 aa26.31■■□□□ 1.8
PHGDH-231ENST00000641939 ABCA10Q8WWZ4 1543 aa26.31■■□□□ 1.8
PHGDH-231ENST00000641939 GRIN2BQ13224 1484 aa26.27■■□□□ 1.8
PHGDH-231ENST00000641939 PBRM1Q86U86 1689 aa26.25■■□□□ 1.79
PHGDH-231ENST00000641939 SNAPC4Q5SXM2 1469 aa26.25■■□□□ 1.79
PHGDH-231ENST00000641939 ABCA5Q8WWZ7 1642 aa26.25■■□□□ 1.79
PHGDH-231ENST00000641939 GAPVD1Q14C86 1478 aa26.24■■□□□ 1.79
PHGDH-231ENST00000641939 MAGI1Q96QZ7 1491 aaPredicted RBP26.22■■□□□ 1.79
PHGDH-231ENST00000641939 FBLN2P98095 1184 aa26.21■■□□□ 1.79
PHGDH-231ENST00000641939 SYNJ2O15056 1496 aa26.12■■□□□ 1.77
PHGDH-231ENST00000641939 CHMP7Q8WUX9 453 aaPredicted RBP26.11■■□□□ 1.77
PHGDH-231ENST00000641939 RIMBP3CA6NJZ7 1639 aa26.06■■□□□ 1.76
PHGDH-231ENST00000641939 RIMBP3BA6NNM3 1639 aa26.06■■□□□ 1.76
PHGDH-231ENST00000641939 RIMBP3Q9UFD9 1639 aa26.06■■□□□ 1.76
PHGDH-231ENST00000641939 ARHGEF11O15085 1522 aa26.02■■□□□ 1.76
PHGDH-231ENST00000641939 ERICH3Q5RHP9 1530 aa26.01■■□□□ 1.75
PHGDH-231ENST00000641939 TRIM41Q8WV44 630 aa26■■□□□ 1.75
PHGDH-231ENST00000641939 ADAMTS12P58397 1594 aa25.99■■□□□ 1.75
PHGDH-231ENST00000641939 CLASP1Q7Z460 1538 aa25.98■■□□□ 1.75
PHGDH-231ENST00000641939 FHAD1B1AJZ9 1412 aa25.93■■□□□ 1.74
PHGDH-231ENST00000641939 GRIN2AQ12879 1464 aa25.92■■□□□ 1.74
PHGDH-231ENST00000641939 KIF27Q86VH2 1401 aa25.86■■□□□ 1.73
PHGDH-231ENST00000641939 CEP170Q5SW79 1584 aa25.82■■□□□ 1.72
PHGDH-231ENST00000641939 NUP160Q12769 1436 aa25.81■■□□□ 1.72
PHGDH-231ENST00000641939 ARAP1Q96P48 1450 aa25.79■■□□□ 1.72
PHGDH-231ENST00000641939 CYB5RLQ6IPT4 315 aa25.77■■□□□ 1.72
PHGDH-231ENST00000641939 IGF1RP08069 1367 aa25.77■■□□□ 1.72
PHGDH-231ENST00000641939 CUL7Q14999 1698 aa25.76■■□□□ 1.71
PHGDH-231ENST00000641939 SHROOM2Q13796 1616 aa25.67■■□□□ 1.7
PHGDH-231ENST00000641939 RUSC2Q8N2Y8 1516 aa25.62■■□□□ 1.69
PHGDH-231ENST00000641939 CARMIL1Q5VZK9 1371 aa25.61■■□□□ 1.69
PHGDH-231ENST00000641939 ERCC6L2Q5T890 1561 aa25.61■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 281.7 ms