RNA–Protein interactions for RNA: ENST00000641847.1

PHGDH-228, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 692 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-228ENST00000641847 NISCHQ9Y2I1 1504 aa22.51■■□□□ 1.19
PHGDH-228ENST00000641847 ABCC9O60706 1549 aa20.95■□□□□ 0.94
PHGDH-228ENST00000641847 CCDC180Q9P1Z9 1646 aa20.38■□□□□ 0.85
PHGDH-228ENST00000641847 DNAJC5BQ9UF47 199 aa20.08■□□□□ 0.81
PHGDH-228ENST00000641847 RB1CC1Q8TDY2 1594 aa19.73■□□□□ 0.75
PHGDH-228ENST00000641847 PABPN1Q86U42 306 aaKnown RBP eCLIP19.47■□□□□ 0.71
PHGDH-228ENST00000641847 NACADO15069 1562 aa19.46■□□□□ 0.71
PHGDH-228ENST00000641847 DCAF8L2P0C7V8 631 aa19.4■□□□□ 0.7
PHGDH-228ENST00000641847 UNC13AQ9UPW8 1703 aa19.08■□□□□ 0.64
PHGDH-228ENST00000641847 BICRAQ9NZM4 1560 aa19.05■□□□□ 0.64
PHGDH-228ENST00000641847 MYO15BQ96JP2 1530 aa19.02■□□□□ 0.64
PHGDH-228ENST00000641847 CECR2Q9BXF3 1484 aa18.97■□□□□ 0.63
PHGDH-228ENST00000641847 DNAJC5Q9H3Z4 198 aa18.93■□□□□ 0.62
PHGDH-228ENST00000641847 SHROOM4Q9ULL8 1493 aa18.9■□□□□ 0.62
PHGDH-228ENST00000641847 CC2D2AQ9P2K1 1620 aa18.85■□□□□ 0.61
PHGDH-228ENST00000641847 EIF4G1Q04637 1599 aaKnown RBP18.7■□□□□ 0.58
PHGDH-228ENST00000641847 DCAF1Q9Y4B6 1507 aa18.57■□□□□ 0.56
PHGDH-228ENST00000641847 SCRIBQ14160 1630 aa18.55■□□□□ 0.56
PHGDH-228ENST00000641847 ZCCHC6Q5VYS8 1495 aaKnown RBP18.52■□□□□ 0.55
PHGDH-228ENST00000641847 CUX2O14529 1486 aa18.32■□□□□ 0.52
PHGDH-228ENST00000641847 ERCC6Q03468 1493 aa18.22■□□□□ 0.51
PHGDH-228ENST00000641847 NCAPD3P42695 1498 aa17.98■□□□□ 0.47
PHGDH-228ENST00000641847 TRIM41Q8WV44 630 aa17.93■□□□□ 0.46
PHGDH-228ENST00000641847 ATAD2BQ9ULI0 1458 aa17.83■□□□□ 0.45
PHGDH-228ENST00000641847 NESP48681 1621 aa17.8■□□□□ 0.44
PHGDH-228ENST00000641847 SMARCA2P51531 1590 aa17.79■□□□□ 0.44
PHGDH-228ENST00000641847 HMGXB3Q12766 1538 aa17.77■□□□□ 0.43
PHGDH-228ENST00000641847 THOC2Q8NI27 1593 aaKnown RBP17.68■□□□□ 0.42
PHGDH-228ENST00000641847 BAZ1BQ9UIG0 1483 aaKnown RBP17.68■□□□□ 0.42
PHGDH-228ENST00000641847 PDS5BQ9NTI5 1447 aa17.66■□□□□ 0.42
PHGDH-228ENST00000641847 LAMC3Q9Y6N6 1575 aa17.65■□□□□ 0.42
PHGDH-228ENST00000641847 SMARCA4P51532 1647 aa17.63■□□□□ 0.41
PHGDH-228ENST00000641847 BAZ1AQ9NRL2 1556 aaPredicted RBP17.53■□□□□ 0.4
PHGDH-228ENST00000641847 KIF21AQ7Z4S6 1674 aa17.49■□□□□ 0.39
PHGDH-228ENST00000641847 OSCARQ8IYS5 282 aa17.49■□□□□ 0.39
PHGDH-228ENST00000641847 PEG3Q9GZU2 1588 aa17.47■□□□□ 0.39
PHGDH-228ENST00000641847 MRC2Q9UBG0 1479 aa17.46■□□□□ 0.39
PHGDH-228ENST00000641847 CADPSQ9ULU8 1353 aa17.45■□□□□ 0.38
PHGDH-228ENST00000641847 WDR62O43379 1518 aa17.39■□□□□ 0.37
PHGDH-228ENST00000641847 CEP164Q9UPV0 1460 aa17.31■□□□□ 0.36
PHGDH-228ENST00000641847 MROH2BQ7Z745 1585 aa17.3■□□□□ 0.36
PHGDH-228ENST00000641847 FANCD2Q9BXW9 1451 aa17.22■□□□□ 0.35
PHGDH-228ENST00000641847 RIMBP3CA6NJZ7 1639 aa17.14■□□□□ 0.33
PHGDH-228ENST00000641847 RIMBP3BA6NNM3 1639 aa17.14■□□□□ 0.33
PHGDH-228ENST00000641847 RIMBP3Q9UFD9 1639 aa17.14■□□□□ 0.33
PHGDH-228ENST00000641847 TRHP20396 242 aaPredicted RBP17.13■□□□□ 0.33
PHGDH-228ENST00000641847 CFTRP13569 1480 aa17.1■□□□□ 0.33
PHGDH-228ENST00000641847 CYB5RLQ6IPT4 315 aa17.09■□□□□ 0.33
PHGDH-228ENST00000641847 AEBP2Q6ZN18 517 aaPredicted RBP17.07■□□□□ 0.32
PHGDH-228ENST00000641847 ARHGEF11O15085 1522 aa17.06■□□□□ 0.32
PHGDH-228ENST00000641847 URB2Q14146 1524 aaKnown RBP17.05■□□□□ 0.32
PHGDH-228ENST00000641847 WIZO95785 1651 aa17.03■□□□□ 0.32
PHGDH-228ENST00000641847 IFT140Q96RY7 1462 aa16.99■□□□□ 0.31
PHGDH-228ENST00000641847 ZNF608Q9ULD9 1512 aaPredicted RBP16.93■□□□□ 0.3
PHGDH-228ENST00000641847 RSF1Q96T23 1441 aaPredicted RBP16.9■□□□□ 0.3
PHGDH-228ENST00000641847 FBLN2P98095 1184 aa16.89■□□□□ 0.29
PHGDH-228ENST00000641847 ARAP1Q96P48 1450 aa16.85■□□□□ 0.29
PHGDH-228ENST00000641847 TOP2AP11388 1531 aaKnown RBP16.84■□□□□ 0.29
PHGDH-228ENST00000641847 ABCC8Q09428 1581 aa16.83■□□□□ 0.28
PHGDH-228ENST00000641847 TOPBP1Q92547 1522 aa16.8■□□□□ 0.28
PHGDH-228ENST00000641847 EIF4G3O43432 1585 aaKnown RBP16.8■□□□□ 0.28
PHGDH-228ENST00000641847 AQRO60306 1485 aaKnown RBP eCLIP16.76■□□□□ 0.27
PHGDH-228ENST00000641847 SUPT5HO00267 1087 aaKnown RBP16.76■□□□□ 0.27
PHGDH-228ENST00000641847 PRDM2Q13029 1718 aa16.74■□□□□ 0.27
PHGDH-228ENST00000641847 CHD1O14646 1710 aa16.72■□□□□ 0.27
PHGDH-228ENST00000641847 DNMBPQ6XZF7 1577 aa16.69■□□□□ 0.26
PHGDH-228ENST00000641847 CHMP7Q8WUX9 453 aaPredicted RBP16.68■□□□□ 0.26
PHGDH-228ENST00000641847 CCDC88BA6NC98 1476 aa16.67■□□□□ 0.26
PHGDH-228ENST00000641847 TARBP1Q13395 1621 aaKnown RBP16.63■□□□□ 0.25
PHGDH-228ENST00000641847 TDRD9Q8NDG6 1382 aaKnown RBP16.6■□□□□ 0.25
PHGDH-228ENST00000641847 POLA1P09884 1462 aaPredicted RBP16.6■□□□□ 0.25
PHGDH-228ENST00000641847 SOGA1O94964 1423 aa16.59■□□□□ 0.25
PHGDH-228ENST00000641847 SYNJ1O43426 1573 aa16.59■□□□□ 0.25
PHGDH-228ENST00000641847 SNAPC4Q5SXM2 1469 aa16.57■□□□□ 0.24
PHGDH-228ENST00000641847 CLASP1Q7Z460 1538 aa16.56■□□□□ 0.24
PHGDH-228ENST00000641847 RAD54L2Q9Y4B4 1467 aa16.54■□□□□ 0.24
PHGDH-228ENST00000641847 MAGI1Q96QZ7 1491 aaPredicted RBP16.54■□□□□ 0.24
PHGDH-228ENST00000641847 WDR97A6NE52 1622 aa16.52■□□□□ 0.23
PHGDH-228ENST00000641847 GAPVD1Q14C86 1478 aa16.51■□□□□ 0.23
PHGDH-228ENST00000641847 GRIN2BQ13224 1484 aa16.49■□□□□ 0.23
PHGDH-228ENST00000641847 SYNJ2O15056 1496 aa16.48■□□□□ 0.23
PHGDH-228ENST00000641847 FGD5Q6ZNL6 1462 aa16.42■□□□□ 0.22
PHGDH-228ENST00000641847 CUX1P39880 1505 aa16.29■□□□□ 0.2
PHGDH-228ENST00000641847 NPM1P06748 294 aaKnown RBP eCLIP16.25■□□□□ 0.19
PHGDH-228ENST00000641847 ILDR1Q86SU0 546 aaPredicted RBP16.25■□□□□ 0.19
PHGDH-228ENST00000641847 PBRM1Q86U86 1689 aa16.24■□□□□ 0.19
PHGDH-228ENST00000641847 GRIN2AQ12879 1464 aa16.24■□□□□ 0.19
PHGDH-228ENST00000641847 FAM69CQ0P6D2 419 aa16.23■□□□□ 0.19
PHGDH-228ENST00000641847 ERCC6L2Q5T890 1561 aa16.22■□□□□ 0.19
PHGDH-228ENST00000641847 ABCA10Q8WWZ4 1543 aa16.22■□□□□ 0.19
PHGDH-228ENST00000641847 CEP170Q5SW79 1584 aa16.21■□□□□ 0.19
PHGDH-228ENST00000641847 NUP160Q12769 1436 aa16.19■□□□□ 0.18
PHGDH-228ENST00000641847 ABCA5Q8WWZ7 1642 aa16.17■□□□□ 0.18
PHGDH-228ENST00000641847 KDM4FA0A1W2PPD8 638 aa16.16■□□□□ 0.18
PHGDH-228ENST00000641847 CHIC1Q5VXU3 224 aa16.15■□□□□ 0.18
PHGDH-228ENST00000641847 FHAD1B1AJZ9 1412 aa16.14■□□□□ 0.17
PHGDH-228ENST00000641847 ABCC10Q5T3U5 1492 aa16.14■□□□□ 0.17
PHGDH-228ENST00000641847 KIF13AQ9H1H9 1805 aa16.14■□□□□ 0.17
PHGDH-228ENST00000641847 WRNQ14191 1432 aaPredicted RBP eCLIP16.13■□□□□ 0.17
PHGDH-228ENST00000641847 PRG4Q92954 1404 aaPredicted RBP16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms