RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 NISCHQ9Y2I1 1504 aa34.71■■■■□ 3.15
LINC00339-211ENST00000641009 CCDC180Q9P1Z9 1646 aa31.12■■■□□ 2.57
LINC00339-211ENST00000641009 ABCC9O60706 1549 aa30.91■■■□□ 2.54
LINC00339-211ENST00000641009 RB1CC1Q8TDY2 1594 aa29.5■■■□□ 2.31
LINC00339-211ENST00000641009 NACADO15069 1562 aa29.33■■■□□ 2.29
LINC00339-211ENST00000641009 DCAF8L2P0C7V8 631 aa29.2■■■□□ 2.26
LINC00339-211ENST00000641009 UNC13AQ9UPW8 1703 aa28.99■■■□□ 2.23
LINC00339-211ENST00000641009 MYO15BQ96JP2 1530 aa28.94■■■□□ 2.22
LINC00339-211ENST00000641009 ZCCHC6Q5VYS8 1495 aaKnown RBP28.81■■■□□ 2.2
LINC00339-211ENST00000641009 DNAJC5BQ9UF47 199 aa28.79■■■□□ 2.2
LINC00339-211ENST00000641009 PABPN1Q86U42 306 aaKnown RBP eCLIP28.78■■■□□ 2.2
LINC00339-211ENST00000641009 DCAF1Q9Y4B6 1507 aa28.66■■■□□ 2.18
LINC00339-211ENST00000641009 BICRAQ9NZM4 1560 aa28.66■■■□□ 2.18
LINC00339-211ENST00000641009 SCRIBQ14160 1630 aa28.38■■■□□ 2.13
LINC00339-211ENST00000641009 SHROOM4Q9ULL8 1493 aa28.21■■■□□ 2.11
LINC00339-211ENST00000641009 CC2D2AQ9P2K1 1620 aa27.96■■■□□ 2.07
LINC00339-211ENST00000641009 EIF4G1Q04637 1599 aaKnown RBP27.93■■■□□ 2.06
LINC00339-211ENST00000641009 CECR2Q9BXF3 1484 aa27.8■■■□□ 2.04
LINC00339-211ENST00000641009 SMARCA4P51532 1647 aa27.08■■□□□ 1.93
LINC00339-211ENST00000641009 NCAPD3P42695 1498 aa27.03■■□□□ 1.92
LINC00339-211ENST00000641009 ATAD2BQ9ULI0 1458 aa27■■□□□ 1.91
LINC00339-211ENST00000641009 SMARCA2P51531 1590 aa26.95■■□□□ 1.91
LINC00339-211ENST00000641009 BAZ1AQ9NRL2 1556 aaPredicted RBP26.93■■□□□ 1.9
LINC00339-211ENST00000641009 HMGXB3Q12766 1538 aa26.89■■□□□ 1.9
LINC00339-211ENST00000641009 PEG3Q9GZU2 1588 aa26.79■■□□□ 1.88
LINC00339-211ENST00000641009 MROH2BQ7Z745 1585 aa26.77■■□□□ 1.88
LINC00339-211ENST00000641009 BAZ1BQ9UIG0 1483 aaKnown RBP26.76■■□□□ 1.88
LINC00339-211ENST00000641009 ERCC6Q03468 1493 aa26.65■■□□□ 1.86
LINC00339-211ENST00000641009 NESP48681 1621 aa26.62■■□□□ 1.85
LINC00339-211ENST00000641009 CUX2O14529 1486 aa26.53■■□□□ 1.84
LINC00339-211ENST00000641009 WIZO95785 1651 aa26.51■■□□□ 1.83
LINC00339-211ENST00000641009 LAMC3Q9Y6N6 1575 aa26.45■■□□□ 1.82
LINC00339-211ENST00000641009 KIF21AQ7Z4S6 1674 aa26.37■■□□□ 1.81
LINC00339-211ENST00000641009 THOC2Q8NI27 1593 aaKnown RBP26.34■■□□□ 1.81
LINC00339-211ENST00000641009 DNAJC5Q9H3Z4 198 aa26.27■■□□□ 1.8
LINC00339-211ENST00000641009 RSF1Q96T23 1441 aaPredicted RBP26.24■■□□□ 1.79
LINC00339-211ENST00000641009 PDS5BQ9NTI5 1447 aa26.24■■□□□ 1.79
LINC00339-211ENST00000641009 CADPSQ9ULU8 1353 aa26.22■■□□□ 1.79
LINC00339-211ENST00000641009 TOP2AP11388 1531 aaKnown RBP26.13■■□□□ 1.77
LINC00339-211ENST00000641009 MRC2Q9UBG0 1479 aa26.02■■□□□ 1.76
LINC00339-211ENST00000641009 WDR62O43379 1518 aa25.98■■□□□ 1.75
LINC00339-211ENST00000641009 CFTRP13569 1480 aa25.98■■□□□ 1.75
LINC00339-211ENST00000641009 CEP164Q9UPV0 1460 aa25.97■■□□□ 1.75
LINC00339-211ENST00000641009 FANCD2Q9BXW9 1451 aa25.96■■□□□ 1.75
LINC00339-211ENST00000641009 PRDM2Q13029 1718 aa25.9■■□□□ 1.74
LINC00339-211ENST00000641009 CCDC88BA6NC98 1476 aa25.82■■□□□ 1.72
LINC00339-211ENST00000641009 URB2Q14146 1524 aaKnown RBP25.75■■□□□ 1.71
LINC00339-211ENST00000641009 TOPBP1Q92547 1522 aa25.5■■□□□ 1.67
LINC00339-211ENST00000641009 DNMBPQ6XZF7 1577 aa25.44■■□□□ 1.66
LINC00339-211ENST00000641009 IFT140Q96RY7 1462 aa25.43■■□□□ 1.66
LINC00339-211ENST00000641009 ABCC8Q09428 1581 aa25.42■■□□□ 1.66
LINC00339-211ENST00000641009 ZNF608Q9ULD9 1512 aaPredicted RBP25.4■■□□□ 1.66
LINC00339-211ENST00000641009 EIF4G3O43432 1585 aaKnown RBP25.32■■□□□ 1.64
LINC00339-211ENST00000641009 OSCARQ8IYS5 282 aa25.31■■□□□ 1.64
LINC00339-211ENST00000641009 TARBP1Q13395 1621 aaKnown RBP25.3■■□□□ 1.64
LINC00339-211ENST00000641009 POLA1P09884 1462 aaPredicted RBP25.25■■□□□ 1.63
LINC00339-211ENST00000641009 TRIM41Q8WV44 630 aa25.24■■□□□ 1.63
LINC00339-211ENST00000641009 SUPT5HO00267 1087 aaKnown RBP25.23■■□□□ 1.63
LINC00339-211ENST00000641009 AQRO60306 1485 aaKnown RBP eCLIP25.18■■□□□ 1.62
LINC00339-211ENST00000641009 RAD54L2Q9Y4B4 1467 aa25.16■■□□□ 1.62
LINC00339-211ENST00000641009 CHD1O14646 1710 aa25.15■■□□□ 1.62
LINC00339-211ENST00000641009 CUX1P39880 1505 aa25.14■■□□□ 1.62
LINC00339-211ENST00000641009 FGD5Q6ZNL6 1462 aa25.12■■□□□ 1.61
LINC00339-211ENST00000641009 SOGA1O94964 1423 aa25.11■■□□□ 1.61
LINC00339-211ENST00000641009 RIMBP3CA6NJZ7 1639 aa25.07■■□□□ 1.6
LINC00339-211ENST00000641009 RIMBP3BA6NNM3 1639 aa25.07■■□□□ 1.6
LINC00339-211ENST00000641009 RIMBP3Q9UFD9 1639 aa25.07■■□□□ 1.6
LINC00339-211ENST00000641009 TDRD9Q8NDG6 1382 aaKnown RBP25.04■■□□□ 1.6
LINC00339-211ENST00000641009 WDR97A6NE52 1622 aa25.01■■□□□ 1.59
LINC00339-211ENST00000641009 ARHGEF11O15085 1522 aa24.98■■□□□ 1.59
LINC00339-211ENST00000641009 FBLN2P98095 1184 aa24.96■■□□□ 1.59
LINC00339-211ENST00000641009 SNAPC4Q5SXM2 1469 aa24.94■■□□□ 1.58
LINC00339-211ENST00000641009 PBRM1Q86U86 1689 aa24.92■■□□□ 1.58
LINC00339-211ENST00000641009 GRIN2BQ13224 1484 aa24.87■■□□□ 1.57
LINC00339-211ENST00000641009 MAGI1Q96QZ7 1491 aaPredicted RBP24.86■■□□□ 1.57
LINC00339-211ENST00000641009 ABCA10Q8WWZ4 1543 aa24.83■■□□□ 1.57
LINC00339-211ENST00000641009 ABCA5Q8WWZ7 1642 aa24.83■■□□□ 1.57
LINC00339-211ENST00000641009 BIVM-ERCC5R4GMW8 1640 aa24.83■■□□□ 1.57
LINC00339-211ENST00000641009 GAPVD1Q14C86 1478 aa24.83■■□□□ 1.57
LINC00339-211ENST00000641009 TOP2BQ02880 1626 aa24.8■■□□□ 1.56
LINC00339-211ENST00000641009 SYNJ1O43426 1573 aa24.79■■□□□ 1.56
LINC00339-211ENST00000641009 CHMP7Q8WUX9 453 aaPredicted RBP24.78■■□□□ 1.56
LINC00339-211ENST00000641009 SYNJ2O15056 1496 aa24.78■■□□□ 1.56
LINC00339-211ENST00000641009 CLASP1Q7Z460 1538 aa24.77■■□□□ 1.56
LINC00339-211ENST00000641009 WRNQ14191 1432 aaPredicted RBP eCLIP24.76■■□□□ 1.55
LINC00339-211ENST00000641009 ARAP1Q96P48 1450 aa24.74■■□□□ 1.55
LINC00339-211ENST00000641009 CYB5RLQ6IPT4 315 aa24.74■■□□□ 1.55
LINC00339-211ENST00000641009 ADAMTS12P58397 1594 aa24.62■■□□□ 1.53
LINC00339-211ENST00000641009 GRIN2AQ12879 1464 aa24.58■■□□□ 1.52
LINC00339-211ENST00000641009 ERICH3Q5RHP9 1530 aa24.54■■□□□ 1.52
LINC00339-211ENST00000641009 CEP170Q5SW79 1584 aa24.52■■□□□ 1.52
LINC00339-211ENST00000641009 FHAD1B1AJZ9 1412 aa24.49■■□□□ 1.51
LINC00339-211ENST00000641009 NUP160Q12769 1436 aa24.46■■□□□ 1.51
LINC00339-211ENST00000641009 ERCC6L2Q5T890 1561 aa24.44■■□□□ 1.5
LINC00339-211ENST00000641009 TRHP20396 242 aaPredicted RBP24.4■■□□□ 1.5
LINC00339-211ENST00000641009 SHROOM2Q13796 1616 aa24.4■■□□□ 1.5
LINC00339-211ENST00000641009 RUSC2Q8N2Y8 1516 aa24.28■■□□□ 1.48
LINC00339-211ENST00000641009 KIF27Q86VH2 1401 aa24.26■■□□□ 1.47
LINC00339-211ENST00000641009 CUL7Q14999 1698 aa24.25■■□□□ 1.47
LINC00339-211ENST00000641009 IGF1RP08069 1367 aa24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms