RNA–Protein interactions for RNA: ENST00000639358.1

KCNQ3-207, Transcript of potassium voltage-gated channel subfamily Q member 3, humanhuman

TSL 5

Gene KCNQ3, Length 822 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KCNQ3-207ENST00000639358 NISCHQ9Y2I1 1504 aa33.62■■■□□ 2.97
KCNQ3-207ENST00000639358 ABCC9O60706 1549 aa30.9■■■□□ 2.54
KCNQ3-207ENST00000639358 CCDC180Q9P1Z9 1646 aa30.31■■■□□ 2.44
KCNQ3-207ENST00000639358 DNAJC5BQ9UF47 199 aa29.45■■■□□ 2.31
KCNQ3-207ENST00000639358 RB1CC1Q8TDY2 1594 aa29.18■■■□□ 2.26
KCNQ3-207ENST00000639358 NACADO15069 1562 aa28.86■■■□□ 2.21
KCNQ3-207ENST00000639358 DCAF8L2P0C7V8 631 aa28.77■■■□□ 2.2
KCNQ3-207ENST00000639358 PABPN1Q86U42 306 aaKnown RBP eCLIP28.75■■■□□ 2.19
KCNQ3-207ENST00000639358 UNC13AQ9UPW8 1703 aa28.34■■■□□ 2.13
KCNQ3-207ENST00000639358 MYO15BQ96JP2 1530 aa28.29■■■□□ 2.12
KCNQ3-207ENST00000639358 BICRAQ9NZM4 1560 aa28.27■■■□□ 2.12
KCNQ3-207ENST00000639358 SHROOM4Q9ULL8 1493 aa27.93■■■□□ 2.06
KCNQ3-207ENST00000639358 CECR2Q9BXF3 1484 aa27.91■■■□□ 2.06
KCNQ3-207ENST00000639358 CC2D2AQ9P2K1 1620 aa27.84■■■□□ 2.05
KCNQ3-207ENST00000639358 DCAF1Q9Y4B6 1507 aa27.73■■■□□ 2.03
KCNQ3-207ENST00000639358 ZCCHC6Q5VYS8 1495 aaKnown RBP27.72■■■□□ 2.03
KCNQ3-207ENST00000639358 EIF4G1Q04637 1599 aaKnown RBP27.66■■■□□ 2.02
KCNQ3-207ENST00000639358 SCRIBQ14160 1630 aa27.61■■■□□ 2.01
KCNQ3-207ENST00000639358 DNAJC5Q9H3Z4 198 aa27.49■■□□□ 1.99
KCNQ3-207ENST00000639358 CUX2O14529 1486 aa26.86■■□□□ 1.89
KCNQ3-207ENST00000639358 ERCC6Q03468 1493 aa26.77■■□□□ 1.88
KCNQ3-207ENST00000639358 NCAPD3P42695 1498 aa26.68■■□□□ 1.86
KCNQ3-207ENST00000639358 ATAD2BQ9ULI0 1458 aa26.5■■□□□ 1.83
KCNQ3-207ENST00000639358 SMARCA2P51531 1590 aa26.41■■□□□ 1.82
KCNQ3-207ENST00000639358 HMGXB3Q12766 1538 aa26.38■■□□□ 1.81
KCNQ3-207ENST00000639358 NESP48681 1621 aa26.37■■□□□ 1.81
KCNQ3-207ENST00000639358 SMARCA4P51532 1647 aa26.28■■□□□ 1.8
KCNQ3-207ENST00000639358 BAZ1BQ9UIG0 1483 aaKnown RBP26.23■■□□□ 1.79
KCNQ3-207ENST00000639358 THOC2Q8NI27 1593 aaKnown RBP26.14■■□□□ 1.78
KCNQ3-207ENST00000639358 BAZ1AQ9NRL2 1556 aaPredicted RBP26.14■■□□□ 1.78
KCNQ3-207ENST00000639358 LAMC3Q9Y6N6 1575 aa26.12■■□□□ 1.77
KCNQ3-207ENST00000639358 TRIM41Q8WV44 630 aa26.09■■□□□ 1.77
KCNQ3-207ENST00000639358 PDS5BQ9NTI5 1447 aa26.08■■□□□ 1.77
KCNQ3-207ENST00000639358 PEG3Q9GZU2 1588 aa26.03■■□□□ 1.76
KCNQ3-207ENST00000639358 KIF21AQ7Z4S6 1674 aa25.93■■□□□ 1.74
KCNQ3-207ENST00000639358 CADPSQ9ULU8 1353 aa25.88■■□□□ 1.73
KCNQ3-207ENST00000639358 MROH2BQ7Z745 1585 aa25.87■■□□□ 1.73
KCNQ3-207ENST00000639358 MRC2Q9UBG0 1479 aa25.81■■□□□ 1.72
KCNQ3-207ENST00000639358 WDR62O43379 1518 aa25.72■■□□□ 1.71
KCNQ3-207ENST00000639358 OSCARQ8IYS5 282 aa25.66■■□□□ 1.7
KCNQ3-207ENST00000639358 CEP164Q9UPV0 1460 aa25.62■■□□□ 1.69
KCNQ3-207ENST00000639358 FANCD2Q9BXW9 1451 aa25.54■■□□□ 1.68
KCNQ3-207ENST00000639358 WIZO95785 1651 aa25.51■■□□□ 1.67
KCNQ3-207ENST00000639358 CFTRP13569 1480 aa25.43■■□□□ 1.66
KCNQ3-207ENST00000639358 URB2Q14146 1524 aaKnown RBP25.32■■□□□ 1.64
KCNQ3-207ENST00000639358 RSF1Q96T23 1441 aaPredicted RBP25.2■■□□□ 1.63
KCNQ3-207ENST00000639358 RIMBP3CA6NJZ7 1639 aa25.2■■□□□ 1.62
KCNQ3-207ENST00000639358 RIMBP3BA6NNM3 1639 aa25.2■■□□□ 1.62
KCNQ3-207ENST00000639358 RIMBP3Q9UFD9 1639 aa25.2■■□□□ 1.62
KCNQ3-207ENST00000639358 TOP2AP11388 1531 aaKnown RBP25.17■■□□□ 1.62
KCNQ3-207ENST00000639358 IFT140Q96RY7 1462 aa25.14■■□□□ 1.61
KCNQ3-207ENST00000639358 ARHGEF11O15085 1522 aa25.12■■□□□ 1.61
KCNQ3-207ENST00000639358 ZNF608Q9ULD9 1512 aaPredicted RBP25.11■■□□□ 1.61
KCNQ3-207ENST00000639358 CYB5RLQ6IPT4 315 aa25.08■■□□□ 1.61
KCNQ3-207ENST00000639358 TRHP20396 242 aaPredicted RBP25■■□□□ 1.59
KCNQ3-207ENST00000639358 PRDM2Q13029 1718 aa24.98■■□□□ 1.59
KCNQ3-207ENST00000639358 TOPBP1Q92547 1522 aa24.97■■□□□ 1.59
KCNQ3-207ENST00000639358 ABCC8Q09428 1581 aa24.96■■□□□ 1.59
KCNQ3-207ENST00000639358 CCDC88BA6NC98 1476 aa24.94■■□□□ 1.58
KCNQ3-207ENST00000639358 FBLN2P98095 1184 aa24.9■■□□□ 1.58
KCNQ3-207ENST00000639358 EIF4G3O43432 1585 aaKnown RBP24.88■■□□□ 1.57
KCNQ3-207ENST00000639358 AQRO60306 1485 aaKnown RBP eCLIP24.85■■□□□ 1.57
KCNQ3-207ENST00000639358 DNMBPQ6XZF7 1577 aa24.83■■□□□ 1.57
KCNQ3-207ENST00000639358 ARAP1Q96P48 1450 aa24.82■■□□□ 1.56
KCNQ3-207ENST00000639358 CHD1O14646 1710 aa24.76■■□□□ 1.55
KCNQ3-207ENST00000639358 TARBP1Q13395 1621 aaKnown RBP24.74■■□□□ 1.55
KCNQ3-207ENST00000639358 POLA1P09884 1462 aaPredicted RBP24.69■■□□□ 1.54
KCNQ3-207ENST00000639358 AEBP2Q6ZN18 517 aaPredicted RBP24.68■■□□□ 1.54
KCNQ3-207ENST00000639358 TDRD9Q8NDG6 1382 aaKnown RBP24.65■■□□□ 1.54
KCNQ3-207ENST00000639358 SOGA1O94964 1423 aa24.64■■□□□ 1.54
KCNQ3-207ENST00000639358 CHMP7Q8WUX9 453 aaPredicted RBP24.63■■□□□ 1.53
KCNQ3-207ENST00000639358 RAD54L2Q9Y4B4 1467 aa24.62■■□□□ 1.53
KCNQ3-207ENST00000639358 SNAPC4Q5SXM2 1469 aa24.56■■□□□ 1.52
KCNQ3-207ENST00000639358 CLASP1Q7Z460 1538 aa24.52■■□□□ 1.52
KCNQ3-207ENST00000639358 SYNJ1O43426 1573 aa24.51■■□□□ 1.51
KCNQ3-207ENST00000639358 WDR97A6NE52 1622 aa24.5■■□□□ 1.51
KCNQ3-207ENST00000639358 MAGI1Q96QZ7 1491 aaPredicted RBP24.49■■□□□ 1.51
KCNQ3-207ENST00000639358 GRIN2BQ13224 1484 aa24.46■■□□□ 1.51
KCNQ3-207ENST00000639358 FGD5Q6ZNL6 1462 aa24.46■■□□□ 1.51
KCNQ3-207ENST00000639358 SYNJ2O15056 1496 aa24.43■■□□□ 1.5
KCNQ3-207ENST00000639358 GAPVD1Q14C86 1478 aa24.37■■□□□ 1.49
KCNQ3-207ENST00000639358 CUX1P39880 1505 aa24.34■■□□□ 1.49
KCNQ3-207ENST00000639358 PBRM1Q86U86 1689 aa24.19■■□□□ 1.46
KCNQ3-207ENST00000639358 ABCA10Q8WWZ4 1543 aa24.17■■□□□ 1.46
KCNQ3-207ENST00000639358 GRIN2AQ12879 1464 aa24.11■■□□□ 1.45
KCNQ3-207ENST00000639358 ABCA5Q8WWZ7 1642 aa24.1■■□□□ 1.45
KCNQ3-207ENST00000639358 ERCC6L2Q5T890 1561 aa24.08■■□□□ 1.44
KCNQ3-207ENST00000639358 CEP170Q5SW79 1584 aa24.05■■□□□ 1.44
KCNQ3-207ENST00000639358 NUP160Q12769 1436 aa24.05■■□□□ 1.44
KCNQ3-207ENST00000639358 WRNQ14191 1432 aaPredicted RBP eCLIP24.04■■□□□ 1.44
KCNQ3-207ENST00000639358 FHAD1B1AJZ9 1412 aa23.99■■□□□ 1.43
KCNQ3-207ENST00000639358 ADAMTS12P58397 1594 aa23.97■■□□□ 1.43
KCNQ3-207ENST00000639358 SHROOM2Q13796 1616 aa23.93■■□□□ 1.42
KCNQ3-207ENST00000639358 NPM1P06748 294 aaKnown RBP eCLIP23.91■■□□□ 1.42
KCNQ3-207ENST00000639358 JPH4Q96JJ6 628 aa23.91■■□□□ 1.42
KCNQ3-207ENST00000639358 PRG4Q92954 1404 aaPredicted RBP23.91■■□□□ 1.42
KCNQ3-207ENST00000639358 FAM69CQ0P6D2 419 aa23.89■■□□□ 1.41
KCNQ3-207ENST00000639358 ERICH3Q5RHP9 1530 aa23.86■■□□□ 1.41
KCNQ3-207ENST00000639358 KIF13AQ9H1H9 1805 aa23.84■■□□□ 1.41
KCNQ3-207ENST00000639358 SUPT5HO00267 1087 aaKnown RBP23.81■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 205.7 ms