RNA–Protein interactions for RNA: ENST00000639260.1

SCN1B-207, Transcript of sodium voltage-gated channel beta subunit 1, humanhuman

TSL 3

Gene SCN1B, Length 1,430 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1B-207ENST00000639260 NISCHQ9Y2I1 1504 aa41.59■■■■■ 4.25
SCN1B-207ENST00000639260 CCDC180Q9P1Z9 1646 aa36.59■■■■□ 3.45
SCN1B-207ENST00000639260 ABCC9O60706 1549 aa35.05■■■■□ 3.2
SCN1B-207ENST00000639260 ZCCHC6Q5VYS8 1495 aaKnown RBP34.81■■■■□ 3.16
SCN1B-207ENST00000639260 DCAF1Q9Y4B6 1507 aa34.46■■■■□ 3.11
SCN1B-207ENST00000639260 DCAF8L2P0C7V8 631 aa34.43■■■■□ 3.1
SCN1B-207ENST00000639260 MYO15BQ96JP2 1530 aa34.31■■■■□ 3.08
SCN1B-207ENST00000639260 NACADO15069 1562 aa34.23■■■■□ 3.07
SCN1B-207ENST00000639260 RB1CC1Q8TDY2 1594 aa34.06■■■■□ 3.04
SCN1B-207ENST00000639260 SCRIBQ14160 1630 aa33.44■■■□□ 2.94
SCN1B-207ENST00000639260 SHROOM4Q9ULL8 1493 aa33.33■■■□□ 2.93
SCN1B-207ENST00000639260 UNC13AQ9UPW8 1703 aa33.27■■■□□ 2.92
SCN1B-207ENST00000639260 BICRAQ9NZM4 1560 aa33.02■■■□□ 2.88
SCN1B-207ENST00000639260 PABPN1Q86U42 306 aaKnown RBP eCLIP32.91■■■□□ 2.86
SCN1B-207ENST00000639260 CECR2Q9BXF3 1484 aa32.31■■■□□ 2.76
SCN1B-207ENST00000639260 BAZ1AQ9NRL2 1556 aaPredicted RBP32.17■■■□□ 2.74
SCN1B-207ENST00000639260 SMARCA4P51532 1647 aa32.08■■■□□ 2.73
SCN1B-207ENST00000639260 EIF4G1Q04637 1599 aaKnown RBP32.07■■■□□ 2.72
SCN1B-207ENST00000639260 MROH2BQ7Z745 1585 aa32.07■■■□□ 2.72
SCN1B-207ENST00000639260 RSF1Q96T23 1441 aaPredicted RBP32.01■■■□□ 2.71
SCN1B-207ENST00000639260 SUPT5HO00267 1087 aaKnown RBP31.8■■■□□ 2.68
SCN1B-207ENST00000639260 PEG3Q9GZU2 1588 aa31.78■■■□□ 2.68
SCN1B-207ENST00000639260 WIZO95785 1651 aa31.74■■■□□ 2.67
SCN1B-207ENST00000639260 CC2D2AQ9P2K1 1620 aa31.74■■■□□ 2.67
SCN1B-207ENST00000639260 ATAD2BQ9ULI0 1458 aa31.73■■■□□ 2.67
SCN1B-207ENST00000639260 SMARCA2P51531 1590 aa31.72■■■□□ 2.67
SCN1B-207ENST00000639260 NCAPD3P42695 1498 aa31.6■■■□□ 2.65
SCN1B-207ENST00000639260 DNAJC5BQ9UF47 199 aa31.49■■■□□ 2.63
SCN1B-207ENST00000639260 BAZ1BQ9UIG0 1483 aaKnown RBP31.49■■■□□ 2.63
SCN1B-207ENST00000639260 HMGXB3Q12766 1538 aa31.49■■■□□ 2.63
SCN1B-207ENST00000639260 TOP2AP11388 1531 aaKnown RBP31.46■■■□□ 2.63
SCN1B-207ENST00000639260 CCDC88BA6NC98 1476 aa31.11■■■□□ 2.57
SCN1B-207ENST00000639260 CADPSQ9ULU8 1353 aa30.73■■■□□ 2.51
SCN1B-207ENST00000639260 CFTRP13569 1480 aa30.7■■■□□ 2.51
SCN1B-207ENST00000639260 LAMC3Q9Y6N6 1575 aa30.62■■■□□ 2.49
SCN1B-207ENST00000639260 NESP48681 1621 aa30.57■■■□□ 2.48
SCN1B-207ENST00000639260 PRDM2Q13029 1718 aa30.47■■■□□ 2.47
SCN1B-207ENST00000639260 PDS5BQ9NTI5 1447 aa30.4■■■□□ 2.46
SCN1B-207ENST00000639260 FANCD2Q9BXW9 1451 aa30.35■■■□□ 2.45
SCN1B-207ENST00000639260 CEP164Q9UPV0 1460 aa30.23■■■□□ 2.43
SCN1B-207ENST00000639260 KIF21AQ7Z4S6 1674 aa30.21■■■□□ 2.43
SCN1B-207ENST00000639260 ABCC8Q09428 1581 aa30.19■■■□□ 2.42
SCN1B-207ENST00000639260 CHIC1Q5VXU3 224 aa30.17■■■□□ 2.42
SCN1B-207ENST00000639260 WRNQ14191 1432 aaPredicted RBP eCLIP30.14■■■□□ 2.42
SCN1B-207ENST00000639260 ERCC6Q03468 1493 aa30.13■■■□□ 2.41
SCN1B-207ENST00000639260 CUX1P39880 1505 aa30.03■■■□□ 2.4
SCN1B-207ENST00000639260 MRC2Q9UBG0 1479 aa30.02■■■□□ 2.4
SCN1B-207ENST00000639260 URB2Q14146 1524 aaKnown RBP30■■■□□ 2.39
SCN1B-207ENST00000639260 SYNJ1O43426 1573 aa30■■■□□ 2.39
SCN1B-207ENST00000639260 TRIM41Q8WV44 630 aa30■■■□□ 2.39
SCN1B-207ENST00000639260 DNMBPQ6XZF7 1577 aa29.98■■■□□ 2.39
SCN1B-207ENST00000639260 TOP2BQ02880 1626 aa29.98■■■□□ 2.39
SCN1B-207ENST00000639260 BIVM-ERCC5R4GMW8 1640 aa29.96■■■□□ 2.39
SCN1B-207ENST00000639260 TOPBP1Q92547 1522 aa29.96■■■□□ 2.39
SCN1B-207ENST00000639260 THOC2Q8NI27 1593 aaKnown RBP29.92■■■□□ 2.38
SCN1B-207ENST00000639260 WDR62O43379 1518 aa29.9■■■□□ 2.38
SCN1B-207ENST00000639260 FGD5Q6ZNL6 1462 aa29.8■■■□□ 2.36
SCN1B-207ENST00000639260 POLA1P09884 1462 aaPredicted RBP29.76■■■□□ 2.35
SCN1B-207ENST00000639260 SOGA1O94964 1423 aa29.67■■■□□ 2.34
SCN1B-207ENST00000639260 CUX2O14529 1486 aa29.65■■■□□ 2.34
SCN1B-207ENST00000639260 RAD54L2Q9Y4B4 1467 aa29.63■■■□□ 2.33
SCN1B-207ENST00000639260 IFT140Q96RY7 1462 aa29.58■■■□□ 2.33
SCN1B-207ENST00000639260 ABCA10Q8WWZ4 1543 aa29.56■■■□□ 2.32
SCN1B-207ENST00000639260 TARBP1Q13395 1621 aaKnown RBP29.56■■■□□ 2.32
SCN1B-207ENST00000639260 WDR97A6NE52 1622 aa29.49■■■□□ 2.31
SCN1B-207ENST00000639260 KIF27Q86VH2 1401 aa29.45■■■□□ 2.31
SCN1B-207ENST00000639260 RUSC2Q8N2Y8 1516 aa29.44■■■□□ 2.3
SCN1B-207ENST00000639260 EEA1Q15075 1411 aa29.43■■■□□ 2.3
SCN1B-207ENST00000639260 TDRD9Q8NDG6 1382 aaKnown RBP29.4■■■□□ 2.3
SCN1B-207ENST00000639260 ZNF608Q9ULD9 1512 aaPredicted RBP29.37■■■□□ 2.29
SCN1B-207ENST00000639260 ABCA5Q8WWZ7 1642 aa29.35■■■□□ 2.29
SCN1B-207ENST00000639260 FAM9AQ8IZU1 332 aaPredicted RBP29.35■■■□□ 2.29
SCN1B-207ENST00000639260 GAPVD1Q14C86 1478 aa29.33■■■□□ 2.29
SCN1B-207ENST00000639260 AQRO60306 1485 aaKnown RBP eCLIP29.31■■■□□ 2.28
SCN1B-207ENST00000639260 CSRNP3Q8WYN3 585 aa29.29■■■□□ 2.28
SCN1B-207ENST00000639260 IGF1RP08069 1367 aa29.26■■■□□ 2.27
SCN1B-207ENST00000639260 EIF4G3O43432 1585 aaKnown RBP29.26■■■□□ 2.27
SCN1B-207ENST00000639260 GRIN2BQ13224 1484 aa29.21■■■□□ 2.27
SCN1B-207ENST00000639260 ERICH3Q5RHP9 1530 aa29.21■■■□□ 2.27
SCN1B-207ENST00000639260 PBRM1Q86U86 1689 aa29.17■■■□□ 2.26
SCN1B-207ENST00000639260 PRXQ9BXM0 1461 aa29.11■■■□□ 2.25
SCN1B-207ENST00000639260 CARMIL1Q5VZK9 1371 aa29.1■■■□□ 2.25
SCN1B-207ENST00000639260 CUL7Q14999 1698 aa29.08■■■□□ 2.25
SCN1B-207ENST00000639260 SNAPC4Q5SXM2 1469 aa29.05■■■□□ 2.24
SCN1B-207ENST00000639260 MAGI1Q96QZ7 1491 aaPredicted RBP29.04■■■□□ 2.24
SCN1B-207ENST00000639260 KIF21BO75037 1637 aa29.04■■■□□ 2.24
SCN1B-207ENST00000639260 FHAD1B1AJZ9 1412 aa29.03■■■□□ 2.24
SCN1B-207ENST00000639260 ADAMTS12P58397 1594 aa29■■■□□ 2.23
SCN1B-207ENST00000639260 RAPGEF2Q9Y4G8 1499 aa29■■■□□ 2.23
SCN1B-207ENST00000639260 GOLGA3Q08378 1498 aa28.95■■■□□ 2.22
SCN1B-207ENST00000639260 LOC105371045A0A1W2PR82 267 aa28.94■■■□□ 2.22
SCN1B-207ENST00000639260 SYNJ2O15056 1496 aa28.93■■■□□ 2.22
SCN1B-207ENST00000639260 EHMT2Q96KQ7 1210 aa28.87■■■□□ 2.21
SCN1B-207ENST00000639260 CHMP7Q8WUX9 453 aaPredicted RBP28.86■■■□□ 2.21
SCN1B-207ENST00000639260 GRIN2AQ12879 1464 aa28.83■■■□□ 2.21
SCN1B-207ENST00000639260 UBTFP17480 764 aaKnown RBP28.81■■■□□ 2.2
SCN1B-207ENST00000639260 FBLN2P98095 1184 aa28.8■■■□□ 2.2
SCN1B-207ENST00000639260 TNIKQ9UKE5 1360 aa28.76■■■□□ 2.19
SCN1B-207ENST00000639260 CHD1O14646 1710 aa28.72■■■□□ 2.19
SCN1B-207ENST00000639260 NUP160Q12769 1436 aa28.68■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms