RNA–Protein interactions for RNA: ENST00000638685.1

PAX6-236, Transcript of paired box 6, humanhuman

TSL 5 BASIC

Gene PAX6, Length 2,372 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PAX6-236ENST00000638685 NISCHQ9Y2I1 1504 aa22.77■■□□□ 1.24
PAX6-236ENST00000638685 CCDC180Q9P1Z9 1646 aa19.65■□□□□ 0.74
PAX6-236ENST00000638685 ZCCHC6Q5VYS8 1495 aaKnown RBP19.16■□□□□ 0.66
PAX6-236ENST00000638685 SHROOM4Q9ULL8 1493 aa18.92■□□□□ 0.62
PAX6-236ENST00000638685 DCAF8L2P0C7V8 631 aa18.9■□□□□ 0.62
PAX6-236ENST00000638685 DCAF1Q9Y4B6 1507 aa18.71■□□□□ 0.59
PAX6-236ENST00000638685 ABCC9O60706 1549 aa18.61■□□□□ 0.57
PAX6-236ENST00000638685 MYO15BQ96JP2 1530 aa18.38■□□□□ 0.53
PAX6-236ENST00000638685 SCRIBQ14160 1630 aa18.28■□□□□ 0.52
PAX6-236ENST00000638685 SUPT5HO00267 1087 aaKnown RBP18.26■□□□□ 0.51
PAX6-236ENST00000638685 NACADO15069 1562 aa18.26■□□□□ 0.51
PAX6-236ENST00000638685 RB1CC1Q8TDY2 1594 aa18.08■□□□□ 0.48
PAX6-236ENST00000638685 UNC13AQ9UPW8 1703 aa17.9■□□□□ 0.46
PAX6-236ENST00000638685 CECR2Q9BXF3 1484 aa17.8■□□□□ 0.44
PAX6-236ENST00000638685 RSF1Q96T23 1441 aaPredicted RBP17.79■□□□□ 0.44
PAX6-236ENST00000638685 MROH2BQ7Z745 1585 aa17.68■□□□□ 0.42
PAX6-236ENST00000638685 BICRAQ9NZM4 1560 aa17.67■□□□□ 0.42
PAX6-236ENST00000638685 PABPN1Q86U42 306 aaKnown RBP eCLIP17.66■□□□□ 0.42
PAX6-236ENST00000638685 WIZO95785 1651 aa17.57■□□□□ 0.4
PAX6-236ENST00000638685 CHIC1Q5VXU3 224 aa17.54■□□□□ 0.4
PAX6-236ENST00000638685 BAZ1AQ9NRL2 1556 aaPredicted RBP17.51■□□□□ 0.39
PAX6-236ENST00000638685 SMARCA4P51532 1647 aa17.47■□□□□ 0.39
PAX6-236ENST00000638685 TOP2AP11388 1531 aaKnown RBP17.26■□□□□ 0.35
PAX6-236ENST00000638685 PEG3Q9GZU2 1588 aa17.18■□□□□ 0.34
PAX6-236ENST00000638685 SMARCA2P51531 1590 aa17.17■□□□□ 0.34
PAX6-236ENST00000638685 CCDC88BA6NC98 1476 aa17.17■□□□□ 0.34
PAX6-236ENST00000638685 ATAD2BQ9ULI0 1458 aa17.14■□□□□ 0.33
PAX6-236ENST00000638685 EIF4G1Q04637 1599 aaKnown RBP17.13■□□□□ 0.33
PAX6-236ENST00000638685 TRIM41Q8WV44 630 aa17.04■□□□□ 0.32
PAX6-236ENST00000638685 BAZ1BQ9UIG0 1483 aaKnown RBP17.03■□□□□ 0.32
PAX6-236ENST00000638685 LOC105371045A0A1W2PR82 267 aa16.99■□□□□ 0.31
PAX6-236ENST00000638685 ABCC8Q09428 1581 aa16.95■□□□□ 0.3
PAX6-236ENST00000638685 NCAPD3P42695 1498 aa16.91■□□□□ 0.3
PAX6-236ENST00000638685 FAM9AQ8IZU1 332 aaPredicted RBP16.89■□□□□ 0.29
PAX6-236ENST00000638685 HMGXB3Q12766 1538 aa16.87■□□□□ 0.29
PAX6-236ENST00000638685 CC2D2AQ9P2K1 1620 aa16.8■□□□□ 0.28
PAX6-236ENST00000638685 EHMT2Q96KQ7 1210 aa16.74■□□□□ 0.27
PAX6-236ENST00000638685 WRNQ14191 1432 aaPredicted RBP eCLIP16.7■□□□□ 0.26
PAX6-236ENST00000638685 SYNJ1O43426 1573 aa16.69■□□□□ 0.26
PAX6-236ENST00000638685 SOGA1O94964 1423 aa16.66■□□□□ 0.26
PAX6-236ENST00000638685 RUSC2Q8N2Y8 1516 aa16.64■□□□□ 0.25
PAX6-236ENST00000638685 CFTRP13569 1480 aa16.61■□□□□ 0.25
PAX6-236ENST00000638685 DNAJC5BQ9UF47 199 aa16.56■□□□□ 0.24
PAX6-236ENST00000638685 TOP2BQ02880 1626 aa16.52■□□□□ 0.24
PAX6-236ENST00000638685 CADPSQ9ULU8 1353 aa16.51■□□□□ 0.23
PAX6-236ENST00000638685 PCGF6Q9BYE7 350 aa16.51■□□□□ 0.23
PAX6-236ENST00000638685 PRDM2Q13029 1718 aa16.51■□□□□ 0.23
PAX6-236ENST00000638685 CUX1P39880 1505 aa16.5■□□□□ 0.23
PAX6-236ENST00000638685 HRCP23327 699 aa16.5■□□□□ 0.23
PAX6-236ENST00000638685 BIVM-ERCC5R4GMW8 1640 aa16.49■□□□□ 0.23
PAX6-236ENST00000638685 CSRNP3Q8WYN3 585 aa16.46■□□□□ 0.23
PAX6-236ENST00000638685 NESP48681 1621 aa16.45■□□□□ 0.22
PAX6-236ENST00000638685 EEA1Q15075 1411 aa16.44■□□□□ 0.22
PAX6-236ENST00000638685 TRIM26Q12899 539 aaPredicted RBP16.36■□□□□ 0.21
PAX6-236ENST00000638685 FANCD2Q9BXW9 1451 aa16.35■□□□□ 0.21
PAX6-236ENST00000638685 GOLGA3Q08378 1498 aa16.31■□□□□ 0.2
PAX6-236ENST00000638685 UBTFP17480 764 aaKnown RBP16.31■□□□□ 0.2
PAX6-236ENST00000638685 TNIKQ9UKE5 1360 aa16.3■□□□□ 0.2
PAX6-236ENST00000638685 KIF21BO75037 1637 aa16.3■□□□□ 0.2
PAX6-236ENST00000638685 CEP162Q5TB80 1403 aa16.29■□□□□ 0.2
PAX6-236ENST00000638685 RAPGEF2Q9Y4G8 1499 aa16.29■□□□□ 0.2
PAX6-236ENST00000638685 CEP164Q9UPV0 1460 aa16.28■□□□□ 0.2
PAX6-236ENST00000638685 LAMC3Q9Y6N6 1575 aa16.28■□□□□ 0.2
PAX6-236ENST00000638685 FGD5Q6ZNL6 1462 aa16.27■□□□□ 0.19
PAX6-236ENST00000638685 PPARGC1BQ86YN6 1023 aaKnown RBP16.23■□□□□ 0.19
PAX6-236ENST00000638685 KIF27Q86VH2 1401 aa16.21■□□□□ 0.19
PAX6-236ENST00000638685 TOPBP1Q92547 1522 aa16.2■□□□□ 0.18
PAX6-236ENST00000638685 PRXQ9BXM0 1461 aa16.2■□□□□ 0.18
PAX6-236ENST00000638685 DNMBPQ6XZF7 1577 aa16.2■□□□□ 0.18
PAX6-236ENST00000638685 KIF21AQ7Z4S6 1674 aa16.19■□□□□ 0.18
PAX6-236ENST00000638685 CUX2O14529 1486 aa16.19■□□□□ 0.18
PAX6-236ENST00000638685 URB2Q14146 1524 aaKnown RBP16.19■□□□□ 0.18
PAX6-236ENST00000638685 RAD54L2Q9Y4B4 1467 aa16.18■□□□□ 0.18
PAX6-236ENST00000638685 POLA1P09884 1462 aaPredicted RBP16.16■□□□□ 0.18
PAX6-236ENST00000638685 PDS5BQ9NTI5 1447 aa16.14■□□□□ 0.17
PAX6-236ENST00000638685 RANGAP1P46060 587 aaPredicted RBP16.13■□□□□ 0.17
PAX6-236ENST00000638685 ERICH3Q5RHP9 1530 aa16.13■□□□□ 0.17
PAX6-236ENST00000638685 IGF1RP08069 1367 aa16.12■□□□□ 0.17
PAX6-236ENST00000638685 CLIP1P30622 1438 aa16.1■□□□□ 0.17
PAX6-236ENST00000638685 ABCA10Q8WWZ4 1543 aa16.07■□□□□ 0.16
PAX6-236ENST00000638685 ZEB1P37275 1124 aaPredicted RBP16.05■□□□□ 0.16
PAX6-236ENST00000638685 TTBK1Q5TCY1 1321 aaPredicted RBP16.05■□□□□ 0.16
PAX6-236ENST00000638685 WDR97A6NE52 1622 aa16.03■□□□□ 0.16
PAX6-236ENST00000638685 CARMIL1Q5VZK9 1371 aa16.02■□□□□ 0.16
PAX6-236ENST00000638685 TDRD9Q8NDG6 1382 aaKnown RBP15.99■□□□□ 0.15
PAX6-236ENST00000638685 VPS8Q8N3P4 1428 aa15.97■□□□□ 0.15
PAX6-236ENST00000638685 ARAP1Q96P48 1450 aa15.96■□□□□ 0.15
PAX6-236ENST00000638685 TARBP1Q13395 1621 aaKnown RBP15.96■□□□□ 0.14
PAX6-236ENST00000638685 ABCA5Q8WWZ7 1642 aa15.95■□□□□ 0.14
PAX6-236ENST00000638685 MRC2Q9UBG0 1479 aa15.94■□□□□ 0.14
PAX6-236ENST00000638685 ARHGAP35Q9NRY4 1499 aa15.91■□□□□ 0.14
PAX6-236ENST00000638685 GAPVD1Q14C86 1478 aa15.91■□□□□ 0.14
PAX6-236ENST00000638685 CUL7Q14999 1698 aa15.88■□□□□ 0.13
PAX6-236ENST00000638685 WDR62O43379 1518 aa15.86■□□□□ 0.13
PAX6-236ENST00000638685 AQRO60306 1485 aaKnown RBP eCLIP15.86■□□□□ 0.13
PAX6-236ENST00000638685 ERCC6Q03468 1493 aa15.84■□□□□ 0.13
PAX6-236ENST00000638685 ZNF608Q9ULD9 1512 aaPredicted RBP15.83■□□□□ 0.12
PAX6-236ENST00000638685 THOC2Q8NI27 1593 aaKnown RBP15.82■□□□□ 0.12
PAX6-236ENST00000638685 PBRM1Q86U86 1689 aa15.81■□□□□ 0.12
PAX6-236ENST00000638685 CTTNBP2Q8WZ74 1663 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms