RNA–Protein interactions for RNA: ENST00000638114.1

CACNA1A-259, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

TSL 3

Gene CACNA1A, Length 517 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-259ENST00000638114 NISCHQ9Y2I1 1504 aa41.24■■■■■ 4.19
CACNA1A-259ENST00000638114 CCDC180Q9P1Z9 1646 aa36.82■■■■□ 3.49
CACNA1A-259ENST00000638114 ABCC9O60706 1549 aa36.4■■■■□ 3.42
CACNA1A-259ENST00000638114 RB1CC1Q8TDY2 1594 aa34.84■■■■□ 3.17
CACNA1A-259ENST00000638114 NACADO15069 1562 aa34.7■■■■□ 3.14
CACNA1A-259ENST00000638114 DCAF8L2P0C7V8 631 aa34.66■■■■□ 3.14
CACNA1A-259ENST00000638114 MYO15BQ96JP2 1530 aa34.35■■■■□ 3.09
CACNA1A-259ENST00000638114 ZCCHC6Q5VYS8 1495 aaKnown RBP34.28■■■■□ 3.08
CACNA1A-259ENST00000638114 DCAF1Q9Y4B6 1507 aa34.08■■■■□ 3.05
CACNA1A-259ENST00000638114 UNC13AQ9UPW8 1703 aa34.05■■■■□ 3.04
CACNA1A-259ENST00000638114 PABPN1Q86U42 306 aaKnown RBP eCLIP33.96■■■■□ 3.03
CACNA1A-259ENST00000638114 BICRAQ9NZM4 1560 aa33.78■■■■□ 3
CACNA1A-259ENST00000638114 DNAJC5BQ9UF47 199 aa33.69■■■□□ 2.98
CACNA1A-259ENST00000638114 SCRIBQ14160 1630 aa33.61■■■□□ 2.97
CACNA1A-259ENST00000638114 SHROOM4Q9ULL8 1493 aa33.37■■■□□ 2.93
CACNA1A-259ENST00000638114 EIF4G1Q04637 1599 aaKnown RBP32.93■■■□□ 2.86
CACNA1A-259ENST00000638114 CC2D2AQ9P2K1 1620 aa32.89■■■□□ 2.86
CACNA1A-259ENST00000638114 CECR2Q9BXF3 1484 aa32.74■■■□□ 2.83
CACNA1A-259ENST00000638114 SMARCA4P51532 1647 aa32.09■■■□□ 2.73
CACNA1A-259ENST00000638114 NCAPD3P42695 1498 aa32.01■■■□□ 2.71
CACNA1A-259ENST00000638114 BAZ1AQ9NRL2 1556 aaPredicted RBP32■■■□□ 2.71
CACNA1A-259ENST00000638114 ATAD2BQ9ULI0 1458 aa31.99■■■□□ 2.71
CACNA1A-259ENST00000638114 SMARCA2P51531 1590 aa31.94■■■□□ 2.7
CACNA1A-259ENST00000638114 HMGXB3Q12766 1538 aa31.84■■■□□ 2.69
CACNA1A-259ENST00000638114 MROH2BQ7Z745 1585 aa31.79■■■□□ 2.68
CACNA1A-259ENST00000638114 PEG3Q9GZU2 1588 aa31.75■■■□□ 2.67
CACNA1A-259ENST00000638114 BAZ1BQ9UIG0 1483 aaKnown RBP31.73■■■□□ 2.67
CACNA1A-259ENST00000638114 WIZO95785 1651 aa31.44■■■□□ 2.62
CACNA1A-259ENST00000638114 ERCC6Q03468 1493 aa31.41■■■□□ 2.62
CACNA1A-259ENST00000638114 NESP48681 1621 aa31.39■■■□□ 2.62
CACNA1A-259ENST00000638114 RSF1Q96T23 1441 aaPredicted RBP31.29■■■□□ 2.6
CACNA1A-259ENST00000638114 LAMC3Q9Y6N6 1575 aa31.24■■■□□ 2.59
CACNA1A-259ENST00000638114 CUX2O14529 1486 aa31.17■■■□□ 2.58
CACNA1A-259ENST00000638114 TOP2AP11388 1531 aaKnown RBP31.08■■■□□ 2.57
CACNA1A-259ENST00000638114 CADPSQ9ULU8 1353 aa31.07■■■□□ 2.56
CACNA1A-259ENST00000638114 PDS5BQ9NTI5 1447 aa31.05■■■□□ 2.56
CACNA1A-259ENST00000638114 KIF21AQ7Z4S6 1674 aa31.01■■■□□ 2.55
CACNA1A-259ENST00000638114 THOC2Q8NI27 1593 aaKnown RBP30.98■■■□□ 2.55
CACNA1A-259ENST00000638114 CFTRP13569 1480 aa30.81■■■□□ 2.52
CACNA1A-259ENST00000638114 MRC2Q9UBG0 1479 aa30.76■■■□□ 2.51
CACNA1A-259ENST00000638114 FANCD2Q9BXW9 1451 aa30.74■■■□□ 2.51
CACNA1A-259ENST00000638114 CEP164Q9UPV0 1460 aa30.74■■■□□ 2.51
CACNA1A-259ENST00000638114 CCDC88BA6NC98 1476 aa30.71■■■□□ 2.51
CACNA1A-259ENST00000638114 WDR62O43379 1518 aa30.66■■■□□ 2.5
CACNA1A-259ENST00000638114 DNAJC5Q9H3Z4 198 aa30.61■■■□□ 2.49
CACNA1A-259ENST00000638114 PRDM2Q13029 1718 aa30.57■■■□□ 2.48
CACNA1A-259ENST00000638114 URB2Q14146 1524 aaKnown RBP30.44■■■□□ 2.46
CACNA1A-259ENST00000638114 SUPT5HO00267 1087 aaKnown RBP30.29■■■□□ 2.44
CACNA1A-259ENST00000638114 TOPBP1Q92547 1522 aa30.2■■■□□ 2.42
CACNA1A-259ENST00000638114 ABCC8Q09428 1581 aa30.15■■■□□ 2.42
CACNA1A-259ENST00000638114 DNMBPQ6XZF7 1577 aa30.14■■■□□ 2.42
CACNA1A-259ENST00000638114 IFT140Q96RY7 1462 aa30.1■■■□□ 2.41
CACNA1A-259ENST00000638114 ZNF608Q9ULD9 1512 aaPredicted RBP30■■■□□ 2.39
CACNA1A-259ENST00000638114 POLA1P09884 1462 aaPredicted RBP29.93■■■□□ 2.38
CACNA1A-259ENST00000638114 TARBP1Q13395 1621 aaKnown RBP29.89■■■□□ 2.38
CACNA1A-259ENST00000638114 EIF4G3O43432 1585 aaKnown RBP29.87■■■□□ 2.37
CACNA1A-259ENST00000638114 CUX1P39880 1505 aa29.84■■■□□ 2.37
CACNA1A-259ENST00000638114 OSCARQ8IYS5 282 aa29.82■■■□□ 2.36
CACNA1A-259ENST00000638114 FGD5Q6ZNL6 1462 aa29.81■■■□□ 2.36
CACNA1A-259ENST00000638114 RAD54L2Q9Y4B4 1467 aa29.8■■■□□ 2.36
CACNA1A-259ENST00000638114 SOGA1O94964 1423 aa29.79■■■□□ 2.36
CACNA1A-259ENST00000638114 AQRO60306 1485 aaKnown RBP eCLIP29.79■■■□□ 2.36
CACNA1A-259ENST00000638114 TDRD9Q8NDG6 1382 aaKnown RBP29.68■■■□□ 2.34
CACNA1A-259ENST00000638114 WDR97A6NE52 1622 aa29.62■■■□□ 2.33
CACNA1A-259ENST00000638114 CHD1O14646 1710 aa29.57■■■□□ 2.32
CACNA1A-259ENST00000638114 FBLN2P98095 1184 aa29.53■■■□□ 2.32
CACNA1A-259ENST00000638114 WRNQ14191 1432 aaPredicted RBP eCLIP29.53■■■□□ 2.32
CACNA1A-259ENST00000638114 TRIM41Q8WV44 630 aa29.52■■■□□ 2.32
CACNA1A-259ENST00000638114 SNAPC4Q5SXM2 1469 aa29.51■■■□□ 2.31
CACNA1A-259ENST00000638114 TOP2BQ02880 1626 aa29.49■■■□□ 2.31
CACNA1A-259ENST00000638114 BIVM-ERCC5R4GMW8 1640 aa29.49■■■□□ 2.31
CACNA1A-259ENST00000638114 GRIN2BQ13224 1484 aa29.48■■■□□ 2.31
CACNA1A-259ENST00000638114 SYNJ1O43426 1573 aa29.48■■■□□ 2.31
CACNA1A-259ENST00000638114 ABCA10Q8WWZ4 1543 aa29.48■■■□□ 2.31
CACNA1A-259ENST00000638114 GAPVD1Q14C86 1478 aa29.44■■■□□ 2.3
CACNA1A-259ENST00000638114 MAGI1Q96QZ7 1491 aaPredicted RBP29.44■■■□□ 2.3
CACNA1A-259ENST00000638114 PBRM1Q86U86 1689 aa29.42■■■□□ 2.3
CACNA1A-259ENST00000638114 ABCA5Q8WWZ7 1642 aa29.41■■■□□ 2.3
CACNA1A-259ENST00000638114 RIMBP3CA6NJZ7 1639 aa29.4■■■□□ 2.3
CACNA1A-259ENST00000638114 RIMBP3BA6NNM3 1639 aa29.4■■■□□ 2.3
CACNA1A-259ENST00000638114 RIMBP3Q9UFD9 1639 aa29.4■■■□□ 2.3
CACNA1A-259ENST00000638114 CHMP7Q8WUX9 453 aaPredicted RBP29.37■■■□□ 2.29
CACNA1A-259ENST00000638114 ARHGEF11O15085 1522 aa29.35■■■□□ 2.29
CACNA1A-259ENST00000638114 SYNJ2O15056 1496 aa29.34■■■□□ 2.29
CACNA1A-259ENST00000638114 CLASP1Q7Z460 1538 aa29.22■■■□□ 2.27
CACNA1A-259ENST00000638114 ADAMTS12P58397 1594 aa29.17■■■□□ 2.26
CACNA1A-259ENST00000638114 ERICH3Q5RHP9 1530 aa29.13■■■□□ 2.25
CACNA1A-259ENST00000638114 GRIN2AQ12879 1464 aa29.11■■■□□ 2.25
CACNA1A-259ENST00000638114 CYB5RLQ6IPT4 315 aa29.11■■■□□ 2.25
CACNA1A-259ENST00000638114 FHAD1B1AJZ9 1412 aa29.09■■■□□ 2.25
CACNA1A-259ENST00000638114 ARAP1Q96P48 1450 aa29.09■■■□□ 2.25
CACNA1A-259ENST00000638114 CEP170Q5SW79 1584 aa28.99■■■□□ 2.23
CACNA1A-259ENST00000638114 NUP160Q12769 1436 aa28.97■■■□□ 2.23
CACNA1A-259ENST00000638114 KIF27Q86VH2 1401 aa28.94■■■□□ 2.22
CACNA1A-259ENST00000638114 IGF1RP08069 1367 aa28.84■■■□□ 2.21
CACNA1A-259ENST00000638114 CUL7Q14999 1698 aa28.81■■■□□ 2.2
CACNA1A-259ENST00000638114 ERCC6L2Q5T890 1561 aa28.81■■■□□ 2.2
CACNA1A-259ENST00000638114 SHROOM2Q13796 1616 aa28.8■■■□□ 2.2
CACNA1A-259ENST00000638114 RUSC2Q8N2Y8 1516 aa28.74■■■□□ 2.19
CACNA1A-259ENST00000638114 JPH4Q96JJ6 628 aa28.69■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms