RNA–Protein interactions for RNA: ENST00000637809.1

CACNA1A-250, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

TSL 5

Gene CACNA1A, Length 871 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-250ENST00000637809 NISCHQ9Y2I1 1504 aa30.7■■■□□ 2.51
CACNA1A-250ENST00000637809 ABCC9O60706 1549 aa27.68■■■□□ 2.02
CACNA1A-250ENST00000637809 CCDC180Q9P1Z9 1646 aa27.5■■□□□ 1.99
CACNA1A-250ENST00000637809 RB1CC1Q8TDY2 1594 aa26.26■■□□□ 1.79
CACNA1A-250ENST00000637809 DNAJC5BQ9UF47 199 aa26.15■■□□□ 1.78
CACNA1A-250ENST00000637809 NACADO15069 1562 aa26.08■■□□□ 1.77
CACNA1A-250ENST00000637809 DCAF8L2P0C7V8 631 aa25.92■■□□□ 1.74
CACNA1A-250ENST00000637809 PABPN1Q86U42 306 aaKnown RBP eCLIP25.8■■□□□ 1.72
CACNA1A-250ENST00000637809 MYO15BQ96JP2 1530 aa25.73■■□□□ 1.71
CACNA1A-250ENST00000637809 UNC13AQ9UPW8 1703 aa25.58■■□□□ 1.69
CACNA1A-250ENST00000637809 BICRAQ9NZM4 1560 aa25.56■■□□□ 1.68
CACNA1A-250ENST00000637809 ZCCHC6Q5VYS8 1495 aaKnown RBP25.43■■□□□ 1.66
CACNA1A-250ENST00000637809 DCAF1Q9Y4B6 1507 aa25.36■■□□□ 1.65
CACNA1A-250ENST00000637809 SHROOM4Q9ULL8 1493 aa25.2■■□□□ 1.62
CACNA1A-250ENST00000637809 SCRIBQ14160 1630 aa25.08■■□□□ 1.61
CACNA1A-250ENST00000637809 CC2D2AQ9P2K1 1620 aa24.97■■□□□ 1.59
CACNA1A-250ENST00000637809 CECR2Q9BXF3 1484 aa24.96■■□□□ 1.59
CACNA1A-250ENST00000637809 EIF4G1Q04637 1599 aaKnown RBP24.92■■□□□ 1.58
CACNA1A-250ENST00000637809 NCAPD3P42695 1498 aa24.14■■□□□ 1.46
CACNA1A-250ENST00000637809 DNAJC5Q9H3Z4 198 aa24.06■■□□□ 1.44
CACNA1A-250ENST00000637809 ATAD2BQ9ULI0 1458 aa24.04■■□□□ 1.44
CACNA1A-250ENST00000637809 SMARCA4P51532 1647 aa23.93■■□□□ 1.42
CACNA1A-250ENST00000637809 SMARCA2P51531 1590 aa23.91■■□□□ 1.42
CACNA1A-250ENST00000637809 HMGXB3Q12766 1538 aa23.9■■□□□ 1.42
CACNA1A-250ENST00000637809 CUX2O14529 1486 aa23.9■■□□□ 1.42
CACNA1A-250ENST00000637809 ERCC6Q03468 1493 aa23.87■■□□□ 1.41
CACNA1A-250ENST00000637809 BAZ1AQ9NRL2 1556 aaPredicted RBP23.81■■□□□ 1.4
CACNA1A-250ENST00000637809 NESP48681 1621 aa23.77■■□□□ 1.4
CACNA1A-250ENST00000637809 BAZ1BQ9UIG0 1483 aaKnown RBP23.76■■□□□ 1.39
CACNA1A-250ENST00000637809 PEG3Q9GZU2 1588 aa23.74■■□□□ 1.39
CACNA1A-250ENST00000637809 MROH2BQ7Z745 1585 aa23.66■■□□□ 1.38
CACNA1A-250ENST00000637809 LAMC3Q9Y6N6 1575 aa23.54■■□□□ 1.36
CACNA1A-250ENST00000637809 THOC2Q8NI27 1593 aaKnown RBP23.51■■□□□ 1.35
CACNA1A-250ENST00000637809 PDS5BQ9NTI5 1447 aa23.44■■□□□ 1.34
CACNA1A-250ENST00000637809 CADPSQ9ULU8 1353 aa23.4■■□□□ 1.34
CACNA1A-250ENST00000637809 KIF21AQ7Z4S6 1674 aa23.35■■□□□ 1.33
CACNA1A-250ENST00000637809 WIZO95785 1651 aa23.31■■□□□ 1.32
CACNA1A-250ENST00000637809 MRC2Q9UBG0 1479 aa23.24■■□□□ 1.31
CACNA1A-250ENST00000637809 WDR62O43379 1518 aa23.19■■□□□ 1.3
CACNA1A-250ENST00000637809 RSF1Q96T23 1441 aaPredicted RBP23.16■■□□□ 1.3
CACNA1A-250ENST00000637809 CEP164Q9UPV0 1460 aa23.11■■□□□ 1.29
CACNA1A-250ENST00000637809 CFTRP13569 1480 aa23.11■■□□□ 1.29
CACNA1A-250ENST00000637809 FANCD2Q9BXW9 1451 aa23.11■■□□□ 1.29
CACNA1A-250ENST00000637809 TOP2AP11388 1531 aaKnown RBP23.04■■□□□ 1.28
CACNA1A-250ENST00000637809 URB2Q14146 1524 aaKnown RBP22.93■■□□□ 1.26
CACNA1A-250ENST00000637809 TRIM41Q8WV44 630 aa22.9■■□□□ 1.26
CACNA1A-250ENST00000637809 CCDC88BA6NC98 1476 aa22.81■■□□□ 1.24
CACNA1A-250ENST00000637809 OSCARQ8IYS5 282 aa22.8■■□□□ 1.24
CACNA1A-250ENST00000637809 IFT140Q96RY7 1462 aa22.68■■□□□ 1.22
CACNA1A-250ENST00000637809 PRDM2Q13029 1718 aa22.68■■□□□ 1.22
CACNA1A-250ENST00000637809 ZNF608Q9ULD9 1512 aaPredicted RBP22.67■■□□□ 1.22
CACNA1A-250ENST00000637809 TOPBP1Q92547 1522 aa22.65■■□□□ 1.22
CACNA1A-250ENST00000637809 ABCC8Q09428 1581 aa22.57■■□□□ 1.2
CACNA1A-250ENST00000637809 DNMBPQ6XZF7 1577 aa22.53■■□□□ 1.2
CACNA1A-250ENST00000637809 EIF4G3O43432 1585 aaKnown RBP22.48■■□□□ 1.19
CACNA1A-250ENST00000637809 RIMBP3CA6NJZ7 1639 aa22.47■■□□□ 1.19
CACNA1A-250ENST00000637809 RIMBP3BA6NNM3 1639 aa22.47■■□□□ 1.19
CACNA1A-250ENST00000637809 RIMBP3Q9UFD9 1639 aa22.47■■□□□ 1.19
CACNA1A-250ENST00000637809 AQRO60306 1485 aaKnown RBP eCLIP22.45■■□□□ 1.18
CACNA1A-250ENST00000637809 TARBP1Q13395 1621 aaKnown RBP22.44■■□□□ 1.18
CACNA1A-250ENST00000637809 ARHGEF11O15085 1522 aa22.43■■□□□ 1.18
CACNA1A-250ENST00000637809 POLA1P09884 1462 aaPredicted RBP22.42■■□□□ 1.18
CACNA1A-250ENST00000637809 RAD54L2Q9Y4B4 1467 aa22.34■■□□□ 1.17
CACNA1A-250ENST00000637809 SOGA1O94964 1423 aa22.31■■□□□ 1.16
CACNA1A-250ENST00000637809 TDRD9Q8NDG6 1382 aaKnown RBP22.3■■□□□ 1.16
CACNA1A-250ENST00000637809 FBLN2P98095 1184 aa22.28■■□□□ 1.16
CACNA1A-250ENST00000637809 CYB5RLQ6IPT4 315 aa22.28■■□□□ 1.16
CACNA1A-250ENST00000637809 CHD1O14646 1710 aa22.27■■□□□ 1.16
CACNA1A-250ENST00000637809 FGD5Q6ZNL6 1462 aa22.25■■□□□ 1.15
CACNA1A-250ENST00000637809 CUX1P39880 1505 aa22.23■■□□□ 1.15
CACNA1A-250ENST00000637809 ARAP1Q96P48 1450 aa22.22■■□□□ 1.15
CACNA1A-250ENST00000637809 SNAPC4Q5SXM2 1469 aa22.21■■□□□ 1.15
CACNA1A-250ENST00000637809 WDR97A6NE52 1622 aa22.18■■□□□ 1.14
CACNA1A-250ENST00000637809 GRIN2BQ13224 1484 aa22.13■■□□□ 1.13
CACNA1A-250ENST00000637809 MAGI1Q96QZ7 1491 aaPredicted RBP22.13■■□□□ 1.13
CACNA1A-250ENST00000637809 CLASP1Q7Z460 1538 aa22.12■■□□□ 1.13
CACNA1A-250ENST00000637809 CHMP7Q8WUX9 453 aaPredicted RBP22.12■■□□□ 1.13
CACNA1A-250ENST00000637809 SYNJ2O15056 1496 aa22.07■■□□□ 1.12
CACNA1A-250ENST00000637809 SYNJ1O43426 1573 aa22.04■■□□□ 1.12
CACNA1A-250ENST00000637809 GAPVD1Q14C86 1478 aa22.03■■□□□ 1.12
CACNA1A-250ENST00000637809 TRHP20396 242 aaPredicted RBP22.03■■□□□ 1.12
CACNA1A-250ENST00000637809 ABCA10Q8WWZ4 1543 aa22.01■■□□□ 1.11
CACNA1A-250ENST00000637809 SUPT5HO00267 1087 aaKnown RBP22■■□□□ 1.11
CACNA1A-250ENST00000637809 ABCA5Q8WWZ7 1642 aa21.95■■□□□ 1.1
CACNA1A-250ENST00000637809 PBRM1Q86U86 1689 aa21.92■■□□□ 1.1
CACNA1A-250ENST00000637809 WRNQ14191 1432 aaPredicted RBP eCLIP21.89■■□□□ 1.1
CACNA1A-250ENST00000637809 GRIN2AQ12879 1464 aa21.84■■□□□ 1.09
CACNA1A-250ENST00000637809 TOP2BQ02880 1626 aa21.81■■□□□ 1.08
CACNA1A-250ENST00000637809 NUP160Q12769 1436 aa21.8■■□□□ 1.08
CACNA1A-250ENST00000637809 ADAMTS12P58397 1594 aa21.79■■□□□ 1.08
CACNA1A-250ENST00000637809 BIVM-ERCC5R4GMW8 1640 aa21.79■■□□□ 1.08
CACNA1A-250ENST00000637809 ERCC6L2Q5T890 1561 aa21.77■■□□□ 1.08
CACNA1A-250ENST00000637809 FHAD1B1AJZ9 1412 aa21.76■■□□□ 1.07
CACNA1A-250ENST00000637809 CEP170Q5SW79 1584 aa21.76■■□□□ 1.07
CACNA1A-250ENST00000637809 ERICH3Q5RHP9 1530 aa21.71■■□□□ 1.07
CACNA1A-250ENST00000637809 SHROOM2Q13796 1616 aa21.66■■□□□ 1.06
CACNA1A-250ENST00000637809 PRG4Q92954 1404 aaPredicted RBP21.58■■□□□ 1.05
CACNA1A-250ENST00000637809 JPH4Q96JJ6 628 aa21.58■■□□□ 1.05
CACNA1A-250ENST00000637809 RUSC2Q8N2Y8 1516 aa21.49■■□□□ 1.03
CACNA1A-250ENST00000637809 IGF1RP08069 1367 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms