RNA–Protein interactions for RNA: ENST00000637721.1

SYNGAP1-224, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 190 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-224ENST00000637721 NISCHQ9Y2I1 1504 aa32.67■■■□□ 2.82
SYNGAP1-224ENST00000637721 CCDC180Q9P1Z9 1646 aa29.32■■■□□ 2.28
SYNGAP1-224ENST00000637721 ABCC9O60706 1549 aa29■■■□□ 2.23
SYNGAP1-224ENST00000637721 RB1CC1Q8TDY2 1594 aa27.81■■■□□ 2.04
SYNGAP1-224ENST00000637721 NACADO15069 1562 aa27.68■■■□□ 2.02
SYNGAP1-224ENST00000637721 MYO15BQ96JP2 1530 aa27.41■■□□□ 1.98
SYNGAP1-224ENST00000637721 DCAF8L2P0C7V8 631 aa27.4■■□□□ 1.98
SYNGAP1-224ENST00000637721 ZCCHC6Q5VYS8 1495 aaKnown RBP27.13■■□□□ 1.93
SYNGAP1-224ENST00000637721 UNC13AQ9UPW8 1703 aa27.12■■□□□ 1.93
SYNGAP1-224ENST00000637721 DCAF1Q9Y4B6 1507 aa27.09■■□□□ 1.93
SYNGAP1-224ENST00000637721 DNAJC5BQ9UF47 199 aa27■■□□□ 1.91
SYNGAP1-224ENST00000637721 PABPN1Q86U42 306 aaKnown RBP eCLIP26.99■■□□□ 1.91
SYNGAP1-224ENST00000637721 BICRAQ9NZM4 1560 aa26.91■■□□□ 1.9
SYNGAP1-224ENST00000637721 SHROOM4Q9ULL8 1493 aa26.74■■□□□ 1.87
SYNGAP1-224ENST00000637721 SCRIBQ14160 1630 aa26.6■■□□□ 1.85
SYNGAP1-224ENST00000637721 EIF4G1Q04637 1599 aaKnown RBP26.27■■□□□ 1.8
SYNGAP1-224ENST00000637721 CC2D2AQ9P2K1 1620 aa26.26■■□□□ 1.79
SYNGAP1-224ENST00000637721 CECR2Q9BXF3 1484 aa26.17■■□□□ 1.78
SYNGAP1-224ENST00000637721 NCAPD3P42695 1498 aa25.52■■□□□ 1.68
SYNGAP1-224ENST00000637721 SMARCA4P51532 1647 aa25.45■■□□□ 1.67
SYNGAP1-224ENST00000637721 ATAD2BQ9ULI0 1458 aa25.43■■□□□ 1.66
SYNGAP1-224ENST00000637721 SMARCA2P51531 1590 aa25.43■■□□□ 1.66
SYNGAP1-224ENST00000637721 BAZ1AQ9NRL2 1556 aaPredicted RBP25.39■■□□□ 1.65
SYNGAP1-224ENST00000637721 HMGXB3Q12766 1538 aa25.37■■□□□ 1.65
SYNGAP1-224ENST00000637721 PEG3Q9GZU2 1588 aa25.27■■□□□ 1.64
SYNGAP1-224ENST00000637721 BAZ1BQ9UIG0 1483 aaKnown RBP25.2■■□□□ 1.62
SYNGAP1-224ENST00000637721 MROH2BQ7Z745 1585 aa25.12■■□□□ 1.61
SYNGAP1-224ENST00000637721 ERCC6Q03468 1493 aa25.09■■□□□ 1.61
SYNGAP1-224ENST00000637721 CUX2O14529 1486 aa25.05■■□□□ 1.6
SYNGAP1-224ENST00000637721 NESP48681 1621 aa24.94■■□□□ 1.58
SYNGAP1-224ENST00000637721 LAMC3Q9Y6N6 1575 aa24.94■■□□□ 1.58
SYNGAP1-224ENST00000637721 WIZO95785 1651 aa24.83■■□□□ 1.57
SYNGAP1-224ENST00000637721 PDS5BQ9NTI5 1447 aa24.79■■□□□ 1.56
SYNGAP1-224ENST00000637721 DNAJC5Q9H3Z4 198 aa24.78■■□□□ 1.56
SYNGAP1-224ENST00000637721 CADPSQ9ULU8 1353 aa24.74■■□□□ 1.55
SYNGAP1-224ENST00000637721 THOC2Q8NI27 1593 aaKnown RBP24.74■■□□□ 1.55
SYNGAP1-224ENST00000637721 KIF21AQ7Z4S6 1674 aa24.69■■□□□ 1.54
SYNGAP1-224ENST00000637721 RSF1Q96T23 1441 aaPredicted RBP24.69■■□□□ 1.54
SYNGAP1-224ENST00000637721 TOP2AP11388 1531 aaKnown RBP24.59■■□□□ 1.53
SYNGAP1-224ENST00000637721 MRC2Q9UBG0 1479 aa24.52■■□□□ 1.52
SYNGAP1-224ENST00000637721 CFTRP13569 1480 aa24.5■■□□□ 1.51
SYNGAP1-224ENST00000637721 WDR62O43379 1518 aa24.47■■□□□ 1.51
SYNGAP1-224ENST00000637721 CEP164Q9UPV0 1460 aa24.46■■□□□ 1.51
SYNGAP1-224ENST00000637721 FANCD2Q9BXW9 1451 aa24.43■■□□□ 1.5
SYNGAP1-224ENST00000637721 PRDM2Q13029 1718 aa24.31■■□□□ 1.48
SYNGAP1-224ENST00000637721 CCDC88BA6NC98 1476 aa24.27■■□□□ 1.48
SYNGAP1-224ENST00000637721 URB2Q14146 1524 aaKnown RBP24.19■■□□□ 1.46
SYNGAP1-224ENST00000637721 ABCC8Q09428 1581 aa24.05■■□□□ 1.44
SYNGAP1-224ENST00000637721 IFT140Q96RY7 1462 aa24■■□□□ 1.43
SYNGAP1-224ENST00000637721 TOPBP1Q92547 1522 aa23.98■■□□□ 1.43
SYNGAP1-224ENST00000637721 DNMBPQ6XZF7 1577 aa23.95■■□□□ 1.42
SYNGAP1-224ENST00000637721 OSCARQ8IYS5 282 aa23.9■■□□□ 1.42
SYNGAP1-224ENST00000637721 ZNF608Q9ULD9 1512 aaPredicted RBP23.84■■□□□ 1.41
SYNGAP1-224ENST00000637721 EIF4G3O43432 1585 aaKnown RBP23.77■■□□□ 1.4
SYNGAP1-224ENST00000637721 TARBP1Q13395 1621 aaKnown RBP23.77■■□□□ 1.4
SYNGAP1-224ENST00000637721 POLA1P09884 1462 aaPredicted RBP23.75■■□□□ 1.39
SYNGAP1-224ENST00000637721 TRIM41Q8WV44 630 aa23.68■■□□□ 1.38
SYNGAP1-224ENST00000637721 WDR97A6NE52 1622 aa23.66■■□□□ 1.38
SYNGAP1-224ENST00000637721 AQRO60306 1485 aaKnown RBP eCLIP23.65■■□□□ 1.38
SYNGAP1-224ENST00000637721 SUPT5HO00267 1087 aaKnown RBP23.65■■□□□ 1.38
SYNGAP1-224ENST00000637721 SOGA1O94964 1423 aa23.65■■□□□ 1.38
SYNGAP1-224ENST00000637721 FGD5Q6ZNL6 1462 aa23.62■■□□□ 1.37
SYNGAP1-224ENST00000637721 RAD54L2Q9Y4B4 1467 aa23.61■■□□□ 1.37
SYNGAP1-224ENST00000637721 CUX1P39880 1505 aa23.6■■□□□ 1.37
SYNGAP1-224ENST00000637721 CHD1O14646 1710 aa23.55■■□□□ 1.36
SYNGAP1-224ENST00000637721 RIMBP3CA6NJZ7 1639 aa23.54■■□□□ 1.36
SYNGAP1-224ENST00000637721 RIMBP3BA6NNM3 1639 aa23.54■■□□□ 1.36
SYNGAP1-224ENST00000637721 RIMBP3Q9UFD9 1639 aa23.54■■□□□ 1.36
SYNGAP1-224ENST00000637721 TDRD9Q8NDG6 1382 aaKnown RBP23.52■■□□□ 1.36
SYNGAP1-224ENST00000637721 ARHGEF11O15085 1522 aa23.49■■□□□ 1.35
SYNGAP1-224ENST00000637721 FBLN2P98095 1184 aa23.46■■□□□ 1.35
SYNGAP1-224ENST00000637721 MAGI1Q96QZ7 1491 aaPredicted RBP23.46■■□□□ 1.35
SYNGAP1-224ENST00000637721 GRIN2BQ13224 1484 aa23.45■■□□□ 1.34
SYNGAP1-224ENST00000637721 SNAPC4Q5SXM2 1469 aa23.44■■□□□ 1.34
SYNGAP1-224ENST00000637721 ABCA10Q8WWZ4 1543 aa23.4■■□□□ 1.34
SYNGAP1-224ENST00000637721 GAPVD1Q14C86 1478 aa23.38■■□□□ 1.33
SYNGAP1-224ENST00000637721 CHMP7Q8WUX9 453 aaPredicted RBP23.37■■□□□ 1.33
SYNGAP1-224ENST00000637721 PBRM1Q86U86 1689 aa23.36■■□□□ 1.33
SYNGAP1-224ENST00000637721 SYNJ2O15056 1496 aa23.36■■□□□ 1.33
SYNGAP1-224ENST00000637721 SYNJ1O43426 1573 aa23.35■■□□□ 1.33
SYNGAP1-224ENST00000637721 WRNQ14191 1432 aaPredicted RBP eCLIP23.33■■□□□ 1.33
SYNGAP1-224ENST00000637721 ABCA5Q8WWZ7 1642 aa23.33■■□□□ 1.33
SYNGAP1-224ENST00000637721 BIVM-ERCC5R4GMW8 1640 aa23.33■■□□□ 1.33
SYNGAP1-224ENST00000637721 TOP2BQ02880 1626 aa23.33■■□□□ 1.32
SYNGAP1-224ENST00000637721 CLASP1Q7Z460 1538 aa23.3■■□□□ 1.32
SYNGAP1-224ENST00000637721 CYB5RLQ6IPT4 315 aa23.26■■□□□ 1.31
SYNGAP1-224ENST00000637721 ARAP1Q96P48 1450 aa23.24■■□□□ 1.31
SYNGAP1-224ENST00000637721 ADAMTS12P58397 1594 aa23.14■■□□□ 1.3
SYNGAP1-224ENST00000637721 ERICH3Q5RHP9 1530 aa23.13■■□□□ 1.29
SYNGAP1-224ENST00000637721 GRIN2AQ12879 1464 aa23.13■■□□□ 1.29
SYNGAP1-224ENST00000637721 FHAD1B1AJZ9 1412 aa23.1■■□□□ 1.29
SYNGAP1-224ENST00000637721 NUP160Q12769 1436 aa23.07■■□□□ 1.28
SYNGAP1-224ENST00000637721 CEP170Q5SW79 1584 aa23.01■■□□□ 1.27
SYNGAP1-224ENST00000637721 TRHP20396 242 aaPredicted RBP22.96■■□□□ 1.27
SYNGAP1-224ENST00000637721 SHROOM2Q13796 1616 aa22.95■■□□□ 1.26
SYNGAP1-224ENST00000637721 KIF27Q86VH2 1401 aa22.9■■□□□ 1.26
SYNGAP1-224ENST00000637721 ERCC6L2Q5T890 1561 aa22.87■■□□□ 1.25
SYNGAP1-224ENST00000637721 CUL7Q14999 1698 aa22.84■■□□□ 1.25
SYNGAP1-224ENST00000637721 IGF1RP08069 1367 aa22.81■■□□□ 1.24
SYNGAP1-224ENST00000637721 RUSC2Q8N2Y8 1516 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms