RNA–Protein interactions for RNA: ENST00000637671.1

SYNGAP1-223, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 100 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-223ENST00000637671 NISCHQ9Y2I1 1504 aa29.8■■■□□ 2.36
SYNGAP1-223ENST00000637671 ABCC9O60706 1549 aa27.22■■□□□ 1.95
SYNGAP1-223ENST00000637671 CCDC180Q9P1Z9 1646 aa26.89■■□□□ 1.9
SYNGAP1-223ENST00000637671 RB1CC1Q8TDY2 1594 aa25.79■■□□□ 1.72
SYNGAP1-223ENST00000637671 DNAJC5BQ9UF47 199 aa25.77■■□□□ 1.72
SYNGAP1-223ENST00000637671 NACADO15069 1562 aa25.53■■□□□ 1.68
SYNGAP1-223ENST00000637671 DCAF8L2P0C7V8 631 aa25.34■■□□□ 1.65
SYNGAP1-223ENST00000637671 PABPN1Q86U42 306 aaKnown RBP eCLIP25.29■■□□□ 1.64
SYNGAP1-223ENST00000637671 UNC13AQ9UPW8 1703 aa25.08■■□□□ 1.61
SYNGAP1-223ENST00000637671 MYO15BQ96JP2 1530 aa25.07■■□□□ 1.6
SYNGAP1-223ENST00000637671 BICRAQ9NZM4 1560 aa24.97■■□□□ 1.59
SYNGAP1-223ENST00000637671 SHROOM4Q9ULL8 1493 aa24.72■■□□□ 1.55
SYNGAP1-223ENST00000637671 ZCCHC6Q5VYS8 1495 aaKnown RBP24.64■■□□□ 1.53
SYNGAP1-223ENST00000637671 DCAF1Q9Y4B6 1507 aa24.61■■□□□ 1.53
SYNGAP1-223ENST00000637671 CECR2Q9BXF3 1484 aa24.58■■□□□ 1.53
SYNGAP1-223ENST00000637671 CC2D2AQ9P2K1 1620 aa24.57■■□□□ 1.52
SYNGAP1-223ENST00000637671 SCRIBQ14160 1630 aa24.49■■□□□ 1.51
SYNGAP1-223ENST00000637671 EIF4G1Q04637 1599 aaKnown RBP24.44■■□□□ 1.5
SYNGAP1-223ENST00000637671 DNAJC5Q9H3Z4 198 aa23.97■■□□□ 1.43
SYNGAP1-223ENST00000637671 CUX2O14529 1486 aa23.64■■□□□ 1.38
SYNGAP1-223ENST00000637671 ERCC6Q03468 1493 aa23.6■■□□□ 1.37
SYNGAP1-223ENST00000637671 NCAPD3P42695 1498 aa23.56■■□□□ 1.36
SYNGAP1-223ENST00000637671 ATAD2BQ9ULI0 1458 aa23.43■■□□□ 1.34
SYNGAP1-223ENST00000637671 SMARCA2P51531 1590 aa23.38■■□□□ 1.33
SYNGAP1-223ENST00000637671 HMGXB3Q12766 1538 aa23.36■■□□□ 1.33
SYNGAP1-223ENST00000637671 SMARCA4P51532 1647 aa23.31■■□□□ 1.32
SYNGAP1-223ENST00000637671 NESP48681 1621 aa23.26■■□□□ 1.31
SYNGAP1-223ENST00000637671 BAZ1BQ9UIG0 1483 aaKnown RBP23.23■■□□□ 1.31
SYNGAP1-223ENST00000637671 BAZ1AQ9NRL2 1556 aaPredicted RBP23.18■■□□□ 1.3
SYNGAP1-223ENST00000637671 THOC2Q8NI27 1593 aaKnown RBP23.1■■□□□ 1.29
SYNGAP1-223ENST00000637671 PEG3Q9GZU2 1588 aa23.09■■□□□ 1.29
SYNGAP1-223ENST00000637671 LAMC3Q9Y6N6 1575 aa23.09■■□□□ 1.29
SYNGAP1-223ENST00000637671 PDS5BQ9NTI5 1447 aa23.01■■□□□ 1.27
SYNGAP1-223ENST00000637671 KIF21AQ7Z4S6 1674 aa22.93■■□□□ 1.26
SYNGAP1-223ENST00000637671 MROH2BQ7Z745 1585 aa22.93■■□□□ 1.26
SYNGAP1-223ENST00000637671 CADPSQ9ULU8 1353 aa22.84■■□□□ 1.25
SYNGAP1-223ENST00000637671 TRIM41Q8WV44 630 aa22.82■■□□□ 1.24
SYNGAP1-223ENST00000637671 MRC2Q9UBG0 1479 aa22.81■■□□□ 1.24
SYNGAP1-223ENST00000637671 WDR62O43379 1518 aa22.74■■□□□ 1.23
SYNGAP1-223ENST00000637671 CEP164Q9UPV0 1460 aa22.66■■□□□ 1.22
SYNGAP1-223ENST00000637671 WIZO95785 1651 aa22.62■■□□□ 1.21
SYNGAP1-223ENST00000637671 FANCD2Q9BXW9 1451 aa22.59■■□□□ 1.21
SYNGAP1-223ENST00000637671 CFTRP13569 1480 aa22.5■■□□□ 1.19
SYNGAP1-223ENST00000637671 OSCARQ8IYS5 282 aa22.5■■□□□ 1.19
SYNGAP1-223ENST00000637671 URB2Q14146 1524 aaKnown RBP22.39■■□□□ 1.17
SYNGAP1-223ENST00000637671 TOP2AP11388 1531 aaKnown RBP22.37■■□□□ 1.17
SYNGAP1-223ENST00000637671 RSF1Q96T23 1441 aaPredicted RBP22.36■■□□□ 1.17
SYNGAP1-223ENST00000637671 IFT140Q96RY7 1462 aa22.22■■□□□ 1.15
SYNGAP1-223ENST00000637671 RIMBP3CA6NJZ7 1639 aa22.2■■□□□ 1.14
SYNGAP1-223ENST00000637671 RIMBP3BA6NNM3 1639 aa22.2■■□□□ 1.14
SYNGAP1-223ENST00000637671 RIMBP3Q9UFD9 1639 aa22.2■■□□□ 1.14
SYNGAP1-223ENST00000637671 PRDM2Q13029 1718 aa22.2■■□□□ 1.14
SYNGAP1-223ENST00000637671 ZNF608Q9ULD9 1512 aaPredicted RBP22.16■■□□□ 1.14
SYNGAP1-223ENST00000637671 ARHGEF11O15085 1522 aa22.12■■□□□ 1.13
SYNGAP1-223ENST00000637671 TOPBP1Q92547 1522 aa22.11■■□□□ 1.13
SYNGAP1-223ENST00000637671 CCDC88BA6NC98 1476 aa22.1■■□□□ 1.13
SYNGAP1-223ENST00000637671 ABCC8Q09428 1581 aa22.08■■□□□ 1.12
SYNGAP1-223ENST00000637671 EIF4G3O43432 1585 aaKnown RBP22.04■■□□□ 1.12
SYNGAP1-223ENST00000637671 DNMBPQ6XZF7 1577 aa22■■□□□ 1.11
SYNGAP1-223ENST00000637671 CYB5RLQ6IPT4 315 aa21.99■■□□□ 1.11
SYNGAP1-223ENST00000637671 AQRO60306 1485 aaKnown RBP eCLIP21.94■■□□□ 1.13e-6■■■■■ 30.9
SYNGAP1-223ENST00000637671 FBLN2P98095 1184 aa21.91■■□□□ 1.1
SYNGAP1-223ENST00000637671 CHD1O14646 1710 aa21.9■■□□□ 1.1
SYNGAP1-223ENST00000637671 TARBP1Q13395 1621 aaKnown RBP21.9■■□□□ 1.1
SYNGAP1-223ENST00000637671 TRHP20396 242 aaPredicted RBP21.89■■□□□ 1.09
SYNGAP1-223ENST00000637671 ARAP1Q96P48 1450 aa21.87■■□□□ 1.09
SYNGAP1-223ENST00000637671 POLA1P09884 1462 aaPredicted RBP21.86■■□□□ 1.09
SYNGAP1-223ENST00000637671 SOGA1O94964 1423 aa21.77■■□□□ 1.08
SYNGAP1-223ENST00000637671 RAD54L2Q9Y4B4 1467 aa21.77■■□□□ 1.07
SYNGAP1-223ENST00000637671 TDRD9Q8NDG6 1382 aaKnown RBP21.75■■□□□ 1.07
SYNGAP1-223ENST00000637671 SNAPC4Q5SXM2 1469 aa21.72■■□□□ 1.07
SYNGAP1-223ENST00000637671 WDR97A6NE52 1622 aa21.72■■□□□ 1.07
SYNGAP1-223ENST00000637671 CHMP7Q8WUX9 453 aaPredicted RBP21.7■■□□□ 1.06
SYNGAP1-223ENST00000637671 FGD5Q6ZNL6 1462 aa21.68■■□□□ 1.06
SYNGAP1-223ENST00000637671 CLASP1Q7Z460 1538 aa21.68■■□□□ 1.06
SYNGAP1-223ENST00000637671 SYNJ1O43426 1573 aa21.68■■□□□ 1.06
SYNGAP1-223ENST00000637671 MAGI1Q96QZ7 1491 aaPredicted RBP21.67■■□□□ 1.06
SYNGAP1-223ENST00000637671 GRIN2BQ13224 1484 aa21.64■■□□□ 1.05
SYNGAP1-223ENST00000637671 SYNJ2O15056 1496 aa21.59■■□□□ 1.05
SYNGAP1-223ENST00000637671 CUX1P39880 1505 aa21.59■■□□□ 1.05
SYNGAP1-223ENST00000637671 AEBP2Q6ZN18 517 aaPredicted RBP21.53■■□□□ 1.04
SYNGAP1-223ENST00000637671 GAPVD1Q14C86 1478 aa21.5■■□□□ 1.03
SYNGAP1-223ENST00000637671 PBRM1Q86U86 1689 aa21.46■■□□□ 1.03
SYNGAP1-223ENST00000637671 ABCA10Q8WWZ4 1543 aa21.42■■□□□ 1.02
SYNGAP1-223ENST00000637671 ABCA5Q8WWZ7 1642 aa21.4■■□□□ 1.02
SYNGAP1-223ENST00000637671 GRIN2AQ12879 1464 aa21.34■■□□□ 1.01
SYNGAP1-223ENST00000637671 WRNQ14191 1432 aaPredicted RBP eCLIP21.3■■□□□ 1
SYNGAP1-223ENST00000637671 ADAMTS12P58397 1594 aa21.27■■□□□ 1
SYNGAP1-223ENST00000637671 ERCC6L2Q5T890 1561 aa21.27■■□□□ 1
SYNGAP1-223ENST00000637671 NUP160Q12769 1436 aa21.27■■□□□ 1
SYNGAP1-223ENST00000637671 CEP170Q5SW79 1584 aa21.26■□□□□ 0.99
SYNGAP1-223ENST00000637671 FHAD1B1AJZ9 1412 aa21.23■□□□□ 0.99
SYNGAP1-223ENST00000637671 SHROOM2Q13796 1616 aa21.18■□□□□ 0.98
SYNGAP1-223ENST00000637671 TOP2BQ02880 1626 aa21.15■□□□□ 0.98
SYNGAP1-223ENST00000637671 ERICH3Q5RHP9 1530 aa21.15■□□□□ 0.98
SYNGAP1-223ENST00000637671 SUPT5HO00267 1087 aaKnown RBP21.15■□□□□ 0.98
SYNGAP1-223ENST00000637671 BIVM-ERCC5R4GMW8 1640 aa21.14■□□□□ 0.97
SYNGAP1-223ENST00000637671 PRG4Q92954 1404 aaPredicted RBP21.12■□□□□ 0.97
SYNGAP1-223ENST00000637671 JPH4Q96JJ6 628 aa21.06■□□□□ 0.96
SYNGAP1-223ENST00000637671 KIF13AQ9H1H9 1805 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms