RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 NISCHQ9Y2I1 1504 aa44.92■■■■■ 4.78
CIITA-215ENST00000637439 ABCC9O60706 1549 aa40.42■■■■■ 4.06
CIITA-215ENST00000637439 CCDC180Q9P1Z9 1646 aa40.4■■■■■ 4.06
CIITA-215ENST00000637439 RB1CC1Q8TDY2 1594 aa38.51■■■■□ 3.76
CIITA-215ENST00000637439 NACADO15069 1562 aa38.22■■■■□ 3.71
CIITA-215ENST00000637439 DNAJC5BQ9UF47 199 aa37.97■■■■□ 3.67
CIITA-215ENST00000637439 DCAF8L2P0C7V8 631 aa37.94■■■■□ 3.66
CIITA-215ENST00000637439 MYO15BQ96JP2 1530 aa37.68■■■■□ 3.62
CIITA-215ENST00000637439 PABPN1Q86U42 306 aaKnown RBP eCLIP37.59■■■■□ 3.61
CIITA-215ENST00000637439 UNC13AQ9UPW8 1703 aa37.57■■■■□ 3.6
CIITA-215ENST00000637439 BICRAQ9NZM4 1560 aa37.32■■■■□ 3.56
CIITA-215ENST00000637439 ZCCHC6Q5VYS8 1495 aaKnown RBP37.2■■■■□ 3.54
CIITA-215ENST00000637439 DCAF1Q9Y4B6 1507 aa37.15■■■■□ 3.54
CIITA-215ENST00000637439 SHROOM4Q9ULL8 1493 aa36.93■■■■□ 3.5
CIITA-215ENST00000637439 SCRIBQ14160 1630 aa36.73■■■■□ 3.47
CIITA-215ENST00000637439 CC2D2AQ9P2K1 1620 aa36.53■■■■□ 3.44
CIITA-215ENST00000637439 CECR2Q9BXF3 1484 aa36.46■■■■□ 3.43
CIITA-215ENST00000637439 EIF4G1Q04637 1599 aaKnown RBP36.44■■■■□ 3.42
CIITA-215ENST00000637439 NCAPD3P42695 1498 aa35.27■■■■□ 3.24
CIITA-215ENST00000637439 ATAD2BQ9ULI0 1458 aa35.11■■■■□ 3.21
CIITA-215ENST00000637439 SMARCA2P51531 1590 aa35.06■■■■□ 3.2
CIITA-215ENST00000637439 SMARCA4P51532 1647 aa35.06■■■■□ 3.2
CIITA-215ENST00000637439 DNAJC5Q9H3Z4 198 aa35.03■■■■□ 3.2
CIITA-215ENST00000637439 HMGXB3Q12766 1538 aa35.01■■■■□ 3.19
CIITA-215ENST00000637439 ERCC6Q03468 1493 aa34.97■■■■□ 3.19
CIITA-215ENST00000637439 CUX2O14529 1486 aa34.96■■■■□ 3.19
CIITA-215ENST00000637439 BAZ1AQ9NRL2 1556 aaPredicted RBP34.9■■■■□ 3.18
CIITA-215ENST00000637439 BAZ1BQ9UIG0 1483 aaKnown RBP34.79■■■■□ 3.16
CIITA-215ENST00000637439 PEG3Q9GZU2 1588 aa34.74■■■■□ 3.15
CIITA-215ENST00000637439 NESP48681 1621 aa34.67■■■■□ 3.14
CIITA-215ENST00000637439 MROH2BQ7Z745 1585 aa34.57■■■■□ 3.13
CIITA-215ENST00000637439 LAMC3Q9Y6N6 1575 aa34.51■■■■□ 3.12
CIITA-215ENST00000637439 THOC2Q8NI27 1593 aaKnown RBP34.38■■■■□ 3.09
CIITA-215ENST00000637439 PDS5BQ9NTI5 1447 aa34.32■■■■□ 3.08
CIITA-215ENST00000637439 KIF21AQ7Z4S6 1674 aa34.25■■■■□ 3.07
CIITA-215ENST00000637439 CADPSQ9ULU8 1353 aa34.19■■■■□ 3.06
CIITA-215ENST00000637439 WIZO95785 1651 aa34.15■■■■□ 3.06
CIITA-215ENST00000637439 MRC2Q9UBG0 1479 aa34■■■■□ 3.03
CIITA-215ENST00000637439 WDR62O43379 1518 aa33.91■■■■□ 3.02
CIITA-215ENST00000637439 CEP164Q9UPV0 1460 aa33.85■■■■□ 3.01
CIITA-215ENST00000637439 RSF1Q96T23 1441 aaPredicted RBP33.83■■■■□ 3.01
CIITA-215ENST00000637439 FANCD2Q9BXW9 1451 aa33.78■■■■□ 3
CIITA-215ENST00000637439 CFTRP13569 1480 aa33.77■■■■□ 3
CIITA-215ENST00000637439 TOP2AP11388 1531 aaKnown RBP33.75■■■□□ 2.99
CIITA-215ENST00000637439 URB2Q14146 1524 aaKnown RBP33.48■■■□□ 2.95
CIITA-215ENST00000637439 PRDM2Q13029 1718 aa33.45■■■□□ 2.94
CIITA-215ENST00000637439 TRIM41Q8WV44 630 aa33.41■■■□□ 2.94
CIITA-215ENST00000637439 CCDC88BA6NC98 1476 aa33.36■■■□□ 2.93
CIITA-215ENST00000637439 OSCARQ8IYS5 282 aa33.34■■■□□ 2.93
CIITA-215ENST00000637439 IFT140Q96RY7 1462 aa33.18■■■□□ 2.9
CIITA-215ENST00000637439 ABCC8Q09428 1581 aa33.13■■■□□ 2.89
CIITA-215ENST00000637439 TOPBP1Q92547 1522 aa33.12■■■□□ 2.89
CIITA-215ENST00000637439 ZNF608Q9ULD9 1512 aaPredicted RBP33.07■■■□□ 2.89
CIITA-215ENST00000637439 DNMBPQ6XZF7 1577 aa33.01■■■□□ 2.88
CIITA-215ENST00000637439 EIF4G3O43432 1585 aaKnown RBP32.92■■■□□ 2.86
CIITA-215ENST00000637439 RIMBP3CA6NJZ7 1639 aa32.88■■■□□ 2.85
CIITA-215ENST00000637439 RIMBP3BA6NNM3 1639 aa32.88■■■□□ 2.85
CIITA-215ENST00000637439 RIMBP3Q9UFD9 1639 aa32.88■■■□□ 2.85
CIITA-215ENST00000637439 TARBP1Q13395 1621 aaKnown RBP32.84■■■□□ 2.85
CIITA-215ENST00000637439 AQRO60306 1485 aaKnown RBP eCLIP32.78■■■□□ 2.84
CIITA-215ENST00000637439 POLA1P09884 1462 aaPredicted RBP32.78■■■□□ 2.84
CIITA-215ENST00000637439 ARHGEF11O15085 1522 aa32.77■■■□□ 2.84
CIITA-215ENST00000637439 CHD1O14646 1710 aa32.69■■■□□ 2.82
CIITA-215ENST00000637439 SOGA1O94964 1423 aa32.65■■■□□ 2.82
CIITA-215ENST00000637439 RAD54L2Q9Y4B4 1467 aa32.63■■■□□ 2.81
CIITA-215ENST00000637439 FBLN2P98095 1184 aa32.61■■■□□ 2.81
CIITA-215ENST00000637439 WDR97A6NE52 1622 aa32.58■■■□□ 2.81
CIITA-215ENST00000637439 TDRD9Q8NDG6 1382 aaKnown RBP32.57■■■□□ 2.8
CIITA-215ENST00000637439 FGD5Q6ZNL6 1462 aa32.55■■■□□ 2.8
CIITA-215ENST00000637439 CYB5RLQ6IPT4 315 aa32.53■■■□□ 2.8
CIITA-215ENST00000637439 CUX1P39880 1505 aa32.49■■■□□ 2.79
CIITA-215ENST00000637439 SNAPC4Q5SXM2 1469 aa32.45■■■□□ 2.79
CIITA-215ENST00000637439 ARAP1Q96P48 1450 aa32.42■■■□□ 2.78
CIITA-215ENST00000637439 MAGI1Q96QZ7 1491 aaPredicted RBP32.42■■■□□ 2.78
CIITA-215ENST00000637439 GRIN2BQ13224 1484 aa32.39■■■□□ 2.78
CIITA-215ENST00000637439 CHMP7Q8WUX9 453 aaPredicted RBP32.38■■■□□ 2.77
CIITA-215ENST00000637439 SYNJ1O43426 1573 aa32.34■■■□□ 2.77
CIITA-215ENST00000637439 CLASP1Q7Z460 1538 aa32.32■■■□□ 2.76
CIITA-215ENST00000637439 SYNJ2O15056 1496 aa32.29■■■□□ 2.76
CIITA-215ENST00000637439 GAPVD1Q14C86 1478 aa32.24■■■□□ 2.75
CIITA-215ENST00000637439 SUPT5HO00267 1087 aaKnown RBP32.24■■■□□ 2.75
CIITA-215ENST00000637439 TRHP20396 242 aaPredicted RBP32.23■■■□□ 2.75
CIITA-215ENST00000637439 PBRM1Q86U86 1689 aa32.23■■■□□ 2.75
CIITA-215ENST00000637439 ABCA10Q8WWZ4 1543 aa32.21■■■□□ 2.75
CIITA-215ENST00000637439 ABCA5Q8WWZ7 1642 aa32.15■■■□□ 2.74
CIITA-215ENST00000637439 WRNQ14191 1432 aaPredicted RBP eCLIP32.08■■■□□ 2.73
CIITA-215ENST00000637439 TOP2BQ02880 1626 aa31.98■■■□□ 2.71
CIITA-215ENST00000637439 BIVM-ERCC5R4GMW8 1640 aa31.98■■■□□ 2.71
CIITA-215ENST00000637439 GRIN2AQ12879 1464 aa31.96■■■□□ 2.71
CIITA-215ENST00000637439 ADAMTS12P58397 1594 aa31.91■■■□□ 2.7
CIITA-215ENST00000637439 FHAD1B1AJZ9 1412 aa31.85■■■□□ 2.69
CIITA-215ENST00000637439 NUP160Q12769 1436 aa31.85■■■□□ 2.69
CIITA-215ENST00000637439 CEP170Q5SW79 1584 aa31.82■■■□□ 2.68
CIITA-215ENST00000637439 ERICH3Q5RHP9 1530 aa31.82■■■□□ 2.68
CIITA-215ENST00000637439 ERCC6L2Q5T890 1561 aa31.76■■■□□ 2.67
CIITA-215ENST00000637439 SHROOM2Q13796 1616 aa31.73■■■□□ 2.67
CIITA-215ENST00000637439 PRG4Q92954 1404 aaPredicted RBP31.56■■■□□ 2.64
CIITA-215ENST00000637439 JPH4Q96JJ6 628 aa31.54■■■□□ 2.64
CIITA-215ENST00000637439 RUSC2Q8N2Y8 1516 aa31.46■■■□□ 2.63
CIITA-215ENST00000637439 AEBP2Q6ZN18 517 aaPredicted RBP31.4■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms