RNA–Protein interactions for RNA: ENST00000637352.1

SMARCA2-260, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, humanhuman

TSL 5

Gene SMARCA2, Length 128 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA2-260ENST00000637352 NISCHQ9Y2I1 1504 aa20.87■□□□□ 0.93
SMARCA2-260ENST00000637352 ABCC9O60706 1549 aa19.23■□□□□ 0.67
SMARCA2-260ENST00000637352 CCDC180Q9P1Z9 1646 aa18.71■□□□□ 0.59
SMARCA2-260ENST00000637352 DNAJC5BQ9UF47 199 aa18.34■□□□□ 0.53
SMARCA2-260ENST00000637352 RB1CC1Q8TDY2 1594 aa18.03■□□□□ 0.48
SMARCA2-260ENST00000637352 DCAF8L2P0C7V8 631 aa17.99■□□□□ 0.47
SMARCA2-260ENST00000637352 PABPN1Q86U42 306 aaKnown RBP eCLIP17.95■□□□□ 0.46
SMARCA2-260ENST00000637352 NACADO15069 1562 aa17.82■□□□□ 0.44
SMARCA2-260ENST00000637352 UNC13AQ9UPW8 1703 aa17.59■□□□□ 0.41
SMARCA2-260ENST00000637352 BICRAQ9NZM4 1560 aa17.54■□□□□ 0.4
SMARCA2-260ENST00000637352 MYO15BQ96JP2 1530 aa17.4■□□□□ 0.38
SMARCA2-260ENST00000637352 CECR2Q9BXF3 1484 aa17.3■□□□□ 0.36
SMARCA2-260ENST00000637352 CC2D2AQ9P2K1 1620 aa17.27■□□□□ 0.36
SMARCA2-260ENST00000637352 SCRIBQ14160 1630 aa17.22■□□□□ 0.35
SMARCA2-260ENST00000637352 ZCCHC6Q5VYS8 1495 aaKnown RBP17.22■□□□□ 0.35
SMARCA2-260ENST00000637352 EIF4G1Q04637 1599 aaKnown RBP17.15■□□□□ 0.34
SMARCA2-260ENST00000637352 SHROOM4Q9ULL8 1493 aa17.12■□□□□ 0.33
SMARCA2-260ENST00000637352 DCAF1Q9Y4B6 1507 aa17.11■□□□□ 0.33
SMARCA2-260ENST00000637352 DNAJC5Q9H3Z4 198 aa16.95■□□□□ 0.3
SMARCA2-260ENST00000637352 ERCC6Q03468 1493 aa16.6■□□□□ 0.25
SMARCA2-260ENST00000637352 CUX2O14529 1486 aa16.54■□□□□ 0.24
SMARCA2-260ENST00000637352 NCAPD3P42695 1498 aa16.48■□□□□ 0.23
SMARCA2-260ENST00000637352 ATAD2BQ9ULI0 1458 aa16.45■□□□□ 0.22
SMARCA2-260ENST00000637352 NESP48681 1621 aa16.44■□□□□ 0.22
SMARCA2-260ENST00000637352 SMARCA2P51531 1590 aa16.32■□□□□ 0.2
SMARCA2-260ENST00000637352 SMARCA4P51532 1647 aa16.32■□□□□ 0.2
SMARCA2-260ENST00000637352 HMGXB3Q12766 1538 aa16.29■□□□□ 0.2
SMARCA2-260ENST00000637352 BAZ1BQ9UIG0 1483 aaKnown RBP16.28■□□□□ 0.2
SMARCA2-260ENST00000637352 TRIM41Q8WV44 630 aa16.24■□□□□ 0.19
SMARCA2-260ENST00000637352 THOC2Q8NI27 1593 aaKnown RBP16.21■□□□□ 0.18
SMARCA2-260ENST00000637352 BAZ1AQ9NRL2 1556 aaPredicted RBP16.18■□□□□ 0.18
SMARCA2-260ENST00000637352 MROH2BQ7Z745 1585 aa16.13■□□□□ 0.17
SMARCA2-260ENST00000637352 LAMC3Q9Y6N6 1575 aa16.13■□□□□ 0.17
SMARCA2-260ENST00000637352 KIF21AQ7Z4S6 1674 aa16.11■□□□□ 0.17
SMARCA2-260ENST00000637352 PDS5BQ9NTI5 1447 aa16.11■□□□□ 0.17
SMARCA2-260ENST00000637352 PEG3Q9GZU2 1588 aa16.09■□□□□ 0.17
SMARCA2-260ENST00000637352 CADPSQ9ULU8 1353 aa16.02■□□□□ 0.16
SMARCA2-260ENST00000637352 MRC2Q9UBG0 1479 aa15.98■□□□□ 0.15
SMARCA2-260ENST00000637352 WDR62O43379 1518 aa15.92■□□□□ 0.14
SMARCA2-260ENST00000637352 WIZO95785 1651 aa15.92■□□□□ 0.14
SMARCA2-260ENST00000637352 CEP164Q9UPV0 1460 aa15.88■□□□□ 0.13
SMARCA2-260ENST00000637352 FANCD2Q9BXW9 1451 aa15.85■□□□□ 0.13
SMARCA2-260ENST00000637352 OSCARQ8IYS5 282 aa15.85■□□□□ 0.13
SMARCA2-260ENST00000637352 CFTRP13569 1480 aa15.75■□□□□ 0.11
SMARCA2-260ENST00000637352 URB2Q14146 1524 aaKnown RBP15.74■□□□□ 0.11
SMARCA2-260ENST00000637352 RSF1Q96T23 1441 aaPredicted RBP15.68■□□□□ 0.1
SMARCA2-260ENST00000637352 TOP2AP11388 1531 aaKnown RBP15.64■□□□□ 0.09
SMARCA2-260ENST00000637352 ZNF608Q9ULD9 1512 aaPredicted RBP15.64■□□□□ 0.09
SMARCA2-260ENST00000637352 RIMBP3CA6NJZ7 1639 aa15.62■□□□□ 0.09
SMARCA2-260ENST00000637352 RIMBP3BA6NNM3 1639 aa15.62■□□□□ 0.09
SMARCA2-260ENST00000637352 RIMBP3Q9UFD9 1639 aa15.62■□□□□ 0.09
SMARCA2-260ENST00000637352 CYB5RLQ6IPT4 315 aa15.59■□□□□ 0.09
SMARCA2-260ENST00000637352 ARHGEF11O15085 1522 aa15.56■□□□□ 0.08
SMARCA2-260ENST00000637352 IFT140Q96RY7 1462 aa15.55■□□□□ 0.08
SMARCA2-260ENST00000637352 CCDC88BA6NC98 1476 aa15.54■□□□□ 0.08
SMARCA2-260ENST00000637352 TRHP20396 242 aaPredicted RBP15.53■□□□□ 0.08
SMARCA2-260ENST00000637352 FBLN2P98095 1184 aa15.52■□□□□ 0.08
SMARCA2-260ENST00000637352 TOPBP1Q92547 1522 aa15.51■□□□□ 0.07
SMARCA2-260ENST00000637352 AQRO60306 1485 aaKnown RBP eCLIP15.48■□□□□ 0.07
SMARCA2-260ENST00000637352 EIF4G3O43432 1585 aaKnown RBP15.45■□□□□ 0.06
SMARCA2-260ENST00000637352 PRDM2Q13029 1718 aa15.44■□□□□ 0.06
SMARCA2-260ENST00000637352 ARAP1Q96P48 1450 aa15.4■□□□□ 0.06
SMARCA2-260ENST00000637352 DNMBPQ6XZF7 1577 aa15.39■□□□□ 0.05
SMARCA2-260ENST00000637352 CHD1O14646 1710 aa15.38■□□□□ 0.05
SMARCA2-260ENST00000637352 ABCC8Q09428 1581 aa15.37■□□□□ 0.05
SMARCA2-260ENST00000637352 RAD54L2Q9Y4B4 1467 aa15.37■□□□□ 0.05
SMARCA2-260ENST00000637352 TDRD9Q8NDG6 1382 aaKnown RBP15.36■□□□□ 0.05
SMARCA2-260ENST00000637352 TARBP1Q13395 1621 aaKnown RBP15.35■□□□□ 0.05
SMARCA2-260ENST00000637352 POLA1P09884 1462 aaPredicted RBP15.34■□□□□ 0.05
SMARCA2-260ENST00000637352 SOGA1O94964 1423 aa15.3■□□□□ 0.04
SMARCA2-260ENST00000637352 CHMP7Q8WUX9 453 aaPredicted RBP15.29■□□□□ 0.04
SMARCA2-260ENST00000637352 SNAPC4Q5SXM2 1469 aa15.27■□□□□ 0.04
SMARCA2-260ENST00000637352 AEBP2Q6ZN18 517 aaPredicted RBP15.25■□□□□ 0.03
SMARCA2-260ENST00000637352 FGD5Q6ZNL6 1462 aa15.22■□□□□ 0.03
SMARCA2-260ENST00000637352 CLASP1Q7Z460 1538 aa15.18■□□□□ 0.02
SMARCA2-260ENST00000637352 SYNJ1O43426 1573 aa15.16■□□□□ 0.02
SMARCA2-260ENST00000637352 GRIN2BQ13224 1484 aa15.15■□□□□ 0.02
SMARCA2-260ENST00000637352 CUX1P39880 1505 aa15.15■□□□□ 0.02
SMARCA2-260ENST00000637352 MAGI1Q96QZ7 1491 aaPredicted RBP15.14■□□□□ 0.01
SMARCA2-260ENST00000637352 SYNJ2O15056 1496 aa15.12■□□□□ 0.01
SMARCA2-260ENST00000637352 GAPVD1Q14C86 1478 aa15.11■□□□□ 0.01
SMARCA2-260ENST00000637352 WDR97A6NE52 1622 aa15.06■□□□□ 0
SMARCA2-260ENST00000637352 ERCC6L2Q5T890 1561 aa15.03■□□□□ -0
SMARCA2-260ENST00000637352 PBRM1Q86U86 1689 aa15.03■□□□□ -0
SMARCA2-260ENST00000637352 ABCA10Q8WWZ4 1543 aa14.98□□□□□ -0.01
SMARCA2-260ENST00000637352 SUPT5HO00267 1087 aaKnown RBP14.98□□□□□ -0.01
SMARCA2-260ENST00000637352 ABCA5Q8WWZ7 1642 aa14.96□□□□□ -0.01
SMARCA2-260ENST00000637352 GRIN2AQ12879 1464 aa14.95□□□□□ -0.02
SMARCA2-260ENST00000637352 CEP170Q5SW79 1584 aa14.93□□□□□ -0.02
SMARCA2-260ENST00000637352 NUP160Q12769 1436 aa14.9□□□□□ -0.02
SMARCA2-260ENST00000637352 WRNQ14191 1432 aaPredicted RBP eCLIP14.9□□□□□ -0.02
SMARCA2-260ENST00000637352 ADAMTS12P58397 1594 aa14.89□□□□□ -0.03
SMARCA2-260ENST00000637352 FHAD1B1AJZ9 1412 aa14.86□□□□□ -0.03
SMARCA2-260ENST00000637352 PRG4Q92954 1404 aaPredicted RBP14.85□□□□□ -0.03
SMARCA2-260ENST00000637352 FAM69CQ0P6D2 419 aa14.85□□□□□ -0.03
SMARCA2-260ENST00000637352 JPH4Q96JJ6 628 aa14.84□□□□□ -0.03
SMARCA2-260ENST00000637352 SHROOM2Q13796 1616 aa14.81□□□□□ -0.04
SMARCA2-260ENST00000637352 NPM1P06748 294 aaKnown RBP eCLIP14.79□□□□□ -0.04
SMARCA2-260ENST00000637352 KIF13AQ9H1H9 1805 aa14.78□□□□□ -0.04
SMARCA2-260ENST00000637352 TOP2BQ02880 1626 aa14.77□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms