RNA–Protein interactions for RNA: ENST00000637052.1

SYNGAP1-219, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 100 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-219ENST00000637052 NISCHQ9Y2I1 1504 aa18.49■□□□□ 0.55
SYNGAP1-219ENST00000637052 ABCC9O60706 1549 aa17.01■□□□□ 0.31
SYNGAP1-219ENST00000637052 CCDC180Q9P1Z9 1646 aa16.63■□□□□ 0.25
SYNGAP1-219ENST00000637052 DNAJC5BQ9UF47 199 aa16.28■□□□□ 0.2
SYNGAP1-219ENST00000637052 RB1CC1Q8TDY2 1594 aa15.98■□□□□ 0.15
SYNGAP1-219ENST00000637052 PABPN1Q86U42 306 aaKnown RBP eCLIP15.85■□□□□ 0.13
SYNGAP1-219ENST00000637052 DCAF8L2P0C7V8 631 aa15.81■□□□□ 0.12
SYNGAP1-219ENST00000637052 NACADO15069 1562 aa15.8■□□□□ 0.12
SYNGAP1-219ENST00000637052 UNC13AQ9UPW8 1703 aa15.71■□□□□ 0.1
SYNGAP1-219ENST00000637052 BICRAQ9NZM4 1560 aa15.6■□□□□ 0.09
SYNGAP1-219ENST00000637052 MYO15BQ96JP2 1530 aa15.46■□□□□ 0.07
SYNGAP1-219ENST00000637052 CC2D2AQ9P2K1 1620 aa15.32■□□□□ 0.04
SYNGAP1-219ENST00000637052 CECR2Q9BXF3 1484 aa15.31■□□□□ 0.04
SYNGAP1-219ENST00000637052 ZCCHC6Q5VYS8 1495 aaKnown RBP15.24■□□□□ 0.03
SYNGAP1-219ENST00000637052 SCRIBQ14160 1630 aa15.22■□□□□ 0.03
SYNGAP1-219ENST00000637052 SHROOM4Q9ULL8 1493 aa15.2■□□□□ 0.02
SYNGAP1-219ENST00000637052 EIF4G1Q04637 1599 aaKnown RBP15.19■□□□□ 0.02
SYNGAP1-219ENST00000637052 DCAF1Q9Y4B6 1507 aa15.18■□□□□ 0.02
SYNGAP1-219ENST00000637052 DNAJC5Q9H3Z4 198 aa15.05■□□□□ -0
SYNGAP1-219ENST00000637052 CUX2O14529 1486 aa14.67□□□□□ -0.06
SYNGAP1-219ENST00000637052 ERCC6Q03468 1493 aa14.63□□□□□ -0.07
SYNGAP1-219ENST00000637052 NCAPD3P42695 1498 aa14.62□□□□□ -0.07
SYNGAP1-219ENST00000637052 ATAD2BQ9ULI0 1458 aa14.57□□□□□ -0.08
SYNGAP1-219ENST00000637052 NESP48681 1621 aa14.55□□□□□ -0.08
SYNGAP1-219ENST00000637052 SMARCA4P51532 1647 aa14.46□□□□□ -0.09
SYNGAP1-219ENST00000637052 SMARCA2P51531 1590 aa14.45□□□□□ -0.1
SYNGAP1-219ENST00000637052 HMGXB3Q12766 1538 aa14.45□□□□□ -0.1
SYNGAP1-219ENST00000637052 THOC2Q8NI27 1593 aaKnown RBP14.39□□□□□ -0.11
SYNGAP1-219ENST00000637052 BAZ1BQ9UIG0 1483 aaKnown RBP14.38□□□□□ -0.11
SYNGAP1-219ENST00000637052 BAZ1AQ9NRL2 1556 aaPredicted RBP14.32□□□□□ -0.12
SYNGAP1-219ENST00000637052 TRIM41Q8WV44 630 aa14.32□□□□□ -0.12
SYNGAP1-219ENST00000637052 KIF21AQ7Z4S6 1674 aa14.32□□□□□ -0.12
SYNGAP1-219ENST00000637052 LAMC3Q9Y6N6 1575 aa14.3□□□□□ -0.12
SYNGAP1-219ENST00000637052 PEG3Q9GZU2 1588 aa14.29□□□□□ -0.12
SYNGAP1-219ENST00000637052 MROH2BQ7Z745 1585 aa14.28□□□□□ -0.12
SYNGAP1-219ENST00000637052 PDS5BQ9NTI5 1447 aa14.24□□□□□ -0.13
SYNGAP1-219ENST00000637052 CADPSQ9ULU8 1353 aa14.18□□□□□ -0.14
SYNGAP1-219ENST00000637052 MRC2Q9UBG0 1479 aa14.14□□□□□ -0.15
SYNGAP1-219ENST00000637052 WDR62O43379 1518 aa14.11□□□□□ -0.15
SYNGAP1-219ENST00000637052 WIZO95785 1651 aa14.1□□□□□ -0.15
SYNGAP1-219ENST00000637052 CEP164Q9UPV0 1460 aa14.03□□□□□ -0.16
SYNGAP1-219ENST00000637052 FANCD2Q9BXW9 1451 aa14.02□□□□□ -0.16
SYNGAP1-219ENST00000637052 OSCARQ8IYS5 282 aa14.02□□□□□ -0.17
SYNGAP1-219ENST00000637052 CFTRP13569 1480 aa13.95□□□□□ -0.18
SYNGAP1-219ENST00000637052 URB2Q14146 1524 aaKnown RBP13.95□□□□□ -0.18
SYNGAP1-219ENST00000637052 RSF1Q96T23 1441 aaPredicted RBP13.88□□□□□ -0.19
SYNGAP1-219ENST00000637052 RIMBP3CA6NJZ7 1639 aa13.87□□□□□ -0.19
SYNGAP1-219ENST00000637052 RIMBP3BA6NNM3 1639 aa13.87□□□□□ -0.19
SYNGAP1-219ENST00000637052 RIMBP3Q9UFD9 1639 aa13.87□□□□□ -0.19
SYNGAP1-219ENST00000637052 ZNF608Q9ULD9 1512 aaPredicted RBP13.85□□□□□ -0.19
SYNGAP1-219ENST00000637052 TOP2AP11388 1531 aaKnown RBP13.84□□□□□ -0.19
SYNGAP1-219ENST00000637052 ARHGEF11O15085 1522 aa13.78□□□□□ -0.2
SYNGAP1-219ENST00000637052 PRDM2Q13029 1718 aa13.76□□□□□ -0.21
SYNGAP1-219ENST00000637052 IFT140Q96RY7 1462 aa13.76□□□□□ -0.21
SYNGAP1-219ENST00000637052 CYB5RLQ6IPT4 315 aa13.76□□□□□ -0.21
SYNGAP1-219ENST00000637052 CCDC88BA6NC98 1476 aa13.74□□□□□ -0.21
SYNGAP1-219ENST00000637052 TOPBP1Q92547 1522 aa13.73□□□□□ -0.21
SYNGAP1-219ENST00000637052 EIF4G3O43432 1585 aaKnown RBP13.69□□□□□ -0.22
SYNGAP1-219ENST00000637052 AQRO60306 1485 aaKnown RBP eCLIP13.68□□□□□ -0.22
SYNGAP1-219ENST00000637052 TRHP20396 242 aaPredicted RBP13.67□□□□□ -0.22
SYNGAP1-219ENST00000637052 CHD1O14646 1710 aa13.67□□□□□ -0.22
SYNGAP1-219ENST00000637052 FBLN2P98095 1184 aa13.65□□□□□ -0.22
SYNGAP1-219ENST00000637052 ARAP1Q96P48 1450 aa13.65□□□□□ -0.22
SYNGAP1-219ENST00000637052 TARBP1Q13395 1621 aaKnown RBP13.63□□□□□ -0.23
SYNGAP1-219ENST00000637052 DNMBPQ6XZF7 1577 aa13.62□□□□□ -0.23
SYNGAP1-219ENST00000637052 ABCC8Q09428 1581 aa13.62□□□□□ -0.23
SYNGAP1-219ENST00000637052 RAD54L2Q9Y4B4 1467 aa13.58□□□□□ -0.24
SYNGAP1-219ENST00000637052 POLA1P09884 1462 aaPredicted RBP13.57□□□□□ -0.24
SYNGAP1-219ENST00000637052 TDRD9Q8NDG6 1382 aaKnown RBP13.56□□□□□ -0.24
SYNGAP1-219ENST00000637052 SOGA1O94964 1423 aa13.52□□□□□ -0.25
SYNGAP1-219ENST00000637052 SNAPC4Q5SXM2 1469 aa13.49□□□□□ -0.25
SYNGAP1-219ENST00000637052 CLASP1Q7Z460 1538 aa13.48□□□□□ -0.25
SYNGAP1-219ENST00000637052 CHMP7Q8WUX9 453 aaPredicted RBP13.47□□□□□ -0.25
SYNGAP1-219ENST00000637052 FGD5Q6ZNL6 1462 aa13.45□□□□□ -0.26
SYNGAP1-219ENST00000637052 AEBP2Q6ZN18 517 aaPredicted RBP13.43□□□□□ -0.26
SYNGAP1-219ENST00000637052 CUX1P39880 1505 aa13.42□□□□□ -0.26
SYNGAP1-219ENST00000637052 SYNJ1O43426 1573 aa13.41□□□□□ -0.26
SYNGAP1-219ENST00000637052 MAGI1Q96QZ7 1491 aaPredicted RBP13.4□□□□□ -0.26
SYNGAP1-219ENST00000637052 GRIN2BQ13224 1484 aa13.39□□□□□ -0.27
SYNGAP1-219ENST00000637052 SYNJ2O15056 1496 aa13.37□□□□□ -0.27
SYNGAP1-219ENST00000637052 WDR97A6NE52 1622 aa13.37□□□□□ -0.27
SYNGAP1-219ENST00000637052 GAPVD1Q14C86 1478 aa13.36□□□□□ -0.27
SYNGAP1-219ENST00000637052 PBRM1Q86U86 1689 aa13.34□□□□□ -0.27
SYNGAP1-219ENST00000637052 ERCC6L2Q5T890 1561 aa13.33□□□□□ -0.28
SYNGAP1-219ENST00000637052 ABCA5Q8WWZ7 1642 aa13.27□□□□□ -0.29
SYNGAP1-219ENST00000637052 ABCA10Q8WWZ4 1543 aa13.26□□□□□ -0.29
SYNGAP1-219ENST00000637052 CEP170Q5SW79 1584 aa13.23□□□□□ -0.29
SYNGAP1-219ENST00000637052 GRIN2AQ12879 1464 aa13.23□□□□□ -0.29
SYNGAP1-219ENST00000637052 NUP160Q12769 1436 aa13.19□□□□□ -0.3
SYNGAP1-219ENST00000637052 ADAMTS12P58397 1594 aa13.18□□□□□ -0.3
SYNGAP1-219ENST00000637052 KIF13AQ9H1H9 1805 aa13.18□□□□□ -0.3
SYNGAP1-219ENST00000637052 SHROOM2Q13796 1616 aa13.16□□□□□ -0.3
SYNGAP1-219ENST00000637052 WRNQ14191 1432 aaPredicted RBP eCLIP13.14□□□□□ -0.31
SYNGAP1-219ENST00000637052 SUPT5HO00267 1087 aaKnown RBP13.14□□□□□ -0.31
SYNGAP1-219ENST00000637052 FHAD1B1AJZ9 1412 aa13.13□□□□□ -0.31
SYNGAP1-219ENST00000637052 PRG4Q92954 1404 aaPredicted RBP13.12□□□□□ -0.31
SYNGAP1-219ENST00000637052 JPH4Q96JJ6 628 aa13.11□□□□□ -0.31
SYNGAP1-219ENST00000637052 BIVM-ERCC5R4GMW8 1640 aa13.1□□□□□ -0.31
SYNGAP1-219ENST00000637052 FAM69CQ0P6D2 419 aa13.09□□□□□ -0.31
SYNGAP1-219ENST00000637052 TOP2BQ02880 1626 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms