RNA–Protein interactions for RNA: ENST00000636994.1

PNKP-227, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-227ENST00000636994 NISCHQ9Y2I1 1504 aa42.78■■■■■ 4.44
PNKP-227ENST00000636994 CCDC180Q9P1Z9 1646 aa38.34■■■■□ 3.73
PNKP-227ENST00000636994 ABCC9O60706 1549 aa38.26■■■■□ 3.72
PNKP-227ENST00000636994 RB1CC1Q8TDY2 1594 aa36.44■■■■□ 3.42
PNKP-227ENST00000636994 NACADO15069 1562 aa36.23■■■■□ 3.39
PNKP-227ENST00000636994 DCAF8L2P0C7V8 631 aa36.07■■■■□ 3.36
PNKP-227ENST00000636994 DNAJC5BQ9UF47 199 aa35.86■■■■□ 3.33
PNKP-227ENST00000636994 MYO15BQ96JP2 1530 aa35.78■■■■□ 3.32
PNKP-227ENST00000636994 UNC13AQ9UPW8 1703 aa35.66■■■■□ 3.3
PNKP-227ENST00000636994 PABPN1Q86U42 306 aaKnown RBP eCLIP35.65■■■■□ 3.3
PNKP-227ENST00000636994 ZCCHC6Q5VYS8 1495 aaKnown RBP35.47■■■■□ 3.27
PNKP-227ENST00000636994 BICRAQ9NZM4 1560 aa35.41■■■■□ 3.26
PNKP-227ENST00000636994 DCAF1Q9Y4B6 1507 aa35.35■■■■□ 3.25
PNKP-227ENST00000636994 SCRIBQ14160 1630 aa34.93■■■■□ 3.18
PNKP-227ENST00000636994 SHROOM4Q9ULL8 1493 aa34.91■■■■□ 3.18
PNKP-227ENST00000636994 CC2D2AQ9P2K1 1620 aa34.57■■■■□ 3.12
PNKP-227ENST00000636994 EIF4G1Q04637 1599 aaKnown RBP34.52■■■■□ 3.12
PNKP-227ENST00000636994 CECR2Q9BXF3 1484 aa34.46■■■■□ 3.11
PNKP-227ENST00000636994 NCAPD3P42695 1498 aa33.46■■■□□ 2.95
PNKP-227ENST00000636994 ATAD2BQ9ULI0 1458 aa33.37■■■□□ 2.93
PNKP-227ENST00000636994 SMARCA4P51532 1647 aa33.35■■■□□ 2.93
PNKP-227ENST00000636994 SMARCA2P51531 1590 aa33.26■■■□□ 2.92
PNKP-227ENST00000636994 HMGXB3Q12766 1538 aa33.2■■■□□ 2.91
PNKP-227ENST00000636994 BAZ1AQ9NRL2 1556 aaPredicted RBP33.19■■■□□ 2.9
PNKP-227ENST00000636994 BAZ1BQ9UIG0 1483 aaKnown RBP33.03■■■□□ 2.88
PNKP-227ENST00000636994 PEG3Q9GZU2 1588 aa33.03■■■□□ 2.88
PNKP-227ENST00000636994 ERCC6Q03468 1493 aa33.01■■■□□ 2.88
PNKP-227ENST00000636994 MROH2BQ7Z745 1585 aa32.96■■■□□ 2.87
PNKP-227ENST00000636994 CUX2O14529 1486 aa32.93■■■□□ 2.86
PNKP-227ENST00000636994 NESP48681 1621 aa32.9■■■□□ 2.86
PNKP-227ENST00000636994 DNAJC5Q9H3Z4 198 aa32.86■■■□□ 2.85
PNKP-227ENST00000636994 LAMC3Q9Y6N6 1575 aa32.68■■■□□ 2.82
PNKP-227ENST00000636994 WIZO95785 1651 aa32.58■■■□□ 2.81
PNKP-227ENST00000636994 THOC2Q8NI27 1593 aaKnown RBP32.54■■■□□ 2.8
PNKP-227ENST00000636994 PDS5BQ9NTI5 1447 aa32.49■■■□□ 2.79
PNKP-227ENST00000636994 KIF21AQ7Z4S6 1674 aa32.47■■■□□ 2.79
PNKP-227ENST00000636994 CADPSQ9ULU8 1353 aa32.45■■■□□ 2.78
PNKP-227ENST00000636994 RSF1Q96T23 1441 aaPredicted RBP32.32■■■□□ 2.76
PNKP-227ENST00000636994 MRC2Q9UBG0 1479 aa32.19■■■□□ 2.74
PNKP-227ENST00000636994 TOP2AP11388 1531 aaKnown RBP32.16■■■□□ 2.74
PNKP-227ENST00000636994 WDR62O43379 1518 aa32.12■■■□□ 2.73
PNKP-227ENST00000636994 CFTRP13569 1480 aa32.1■■■□□ 2.73
PNKP-227ENST00000636994 CEP164Q9UPV0 1460 aa32.08■■■□□ 2.73
PNKP-227ENST00000636994 FANCD2Q9BXW9 1451 aa32.06■■■□□ 2.72
PNKP-227ENST00000636994 CCDC88BA6NC98 1476 aa31.81■■■□□ 2.68
PNKP-227ENST00000636994 URB2Q14146 1524 aaKnown RBP31.8■■■□□ 2.68
PNKP-227ENST00000636994 PRDM2Q13029 1718 aa31.78■■■□□ 2.68
PNKP-227ENST00000636994 OSCARQ8IYS5 282 aa31.47■■■□□ 2.63
PNKP-227ENST00000636994 TOPBP1Q92547 1522 aa31.47■■■□□ 2.63
PNKP-227ENST00000636994 IFT140Q96RY7 1462 aa31.45■■■□□ 2.62
PNKP-227ENST00000636994 TRIM41Q8WV44 630 aa31.41■■■□□ 2.62
PNKP-227ENST00000636994 ABCC8Q09428 1581 aa31.41■■■□□ 2.62
PNKP-227ENST00000636994 ZNF608Q9ULD9 1512 aaPredicted RBP31.39■■■□□ 2.62
PNKP-227ENST00000636994 DNMBPQ6XZF7 1577 aa31.35■■■□□ 2.61
PNKP-227ENST00000636994 EIF4G3O43432 1585 aaKnown RBP31.21■■■□□ 2.59
PNKP-227ENST00000636994 TARBP1Q13395 1621 aaKnown RBP31.2■■■□□ 2.58
PNKP-227ENST00000636994 POLA1P09884 1462 aaPredicted RBP31.15■■■□□ 2.58
PNKP-227ENST00000636994 AQRO60306 1485 aaKnown RBP eCLIP31.13■■■□□ 2.57
PNKP-227ENST00000636994 RAD54L2Q9Y4B4 1467 aa31.05■■■□□ 2.56
PNKP-227ENST00000636994 RIMBP3CA6NJZ7 1639 aa31.03■■■□□ 2.56
PNKP-227ENST00000636994 RIMBP3BA6NNM3 1639 aa31.03■■■□□ 2.56
PNKP-227ENST00000636994 RIMBP3Q9UFD9 1639 aa31.03■■■□□ 2.56
PNKP-227ENST00000636994 SOGA1O94964 1423 aa31.02■■■□□ 2.56
PNKP-227ENST00000636994 CHD1O14646 1710 aa30.98■■■□□ 2.55
PNKP-227ENST00000636994 FGD5Q6ZNL6 1462 aa30.97■■■□□ 2.55
PNKP-227ENST00000636994 CUX1P39880 1505 aa30.97■■■□□ 2.55
PNKP-227ENST00000636994 TDRD9Q8NDG6 1382 aaKnown RBP30.95■■■□□ 2.55
PNKP-227ENST00000636994 ARHGEF11O15085 1522 aa30.94■■■□□ 2.54
PNKP-227ENST00000636994 SUPT5HO00267 1087 aaKnown RBP30.94■■■□□ 2.54
PNKP-227ENST00000636994 FBLN2P98095 1184 aa30.89■■■□□ 2.54
PNKP-227ENST00000636994 WDR97A6NE52 1622 aa30.87■■■□□ 2.53
PNKP-227ENST00000636994 SNAPC4Q5SXM2 1469 aa30.8■■■□□ 2.52
PNKP-227ENST00000636994 CYB5RLQ6IPT4 315 aa30.73■■■□□ 2.51
PNKP-227ENST00000636994 GRIN2BQ13224 1484 aa30.73■■■□□ 2.51
PNKP-227ENST00000636994 MAGI1Q96QZ7 1491 aaPredicted RBP30.72■■■□□ 2.51
PNKP-227ENST00000636994 CHMP7Q8WUX9 453 aaPredicted RBP30.69■■■□□ 2.5
PNKP-227ENST00000636994 ARAP1Q96P48 1450 aa30.65■■■□□ 2.5
PNKP-227ENST00000636994 GAPVD1Q14C86 1478 aa30.64■■■□□ 2.5
PNKP-227ENST00000636994 ABCA10Q8WWZ4 1543 aa30.63■■■□□ 2.49
PNKP-227ENST00000636994 CLASP1Q7Z460 1538 aa30.63■■■□□ 2.49
PNKP-227ENST00000636994 SYNJ2O15056 1496 aa30.62■■■□□ 2.49
PNKP-227ENST00000636994 PBRM1Q86U86 1689 aa30.62■■■□□ 2.49
PNKP-227ENST00000636994 SYNJ1O43426 1573 aa30.6■■■□□ 2.49
PNKP-227ENST00000636994 ABCA5Q8WWZ7 1642 aa30.57■■■□□ 2.48
PNKP-227ENST00000636994 WRNQ14191 1432 aaPredicted RBP eCLIP30.52■■■□□ 2.48
PNKP-227ENST00000636994 TOP2BQ02880 1626 aa30.49■■■□□ 2.47
PNKP-227ENST00000636994 BIVM-ERCC5R4GMW8 1640 aa30.49■■■□□ 2.47
PNKP-227ENST00000636994 GRIN2AQ12879 1464 aa30.34■■■□□ 2.45
PNKP-227ENST00000636994 TRHP20396 242 aaPredicted RBP30.34■■■□□ 2.45
PNKP-227ENST00000636994 ADAMTS12P58397 1594 aa30.32■■■□□ 2.45
PNKP-227ENST00000636994 FHAD1B1AJZ9 1412 aa30.25■■■□□ 2.43
PNKP-227ENST00000636994 NUP160Q12769 1436 aa30.24■■■□□ 2.43
PNKP-227ENST00000636994 ERICH3Q5RHP9 1530 aa30.24■■■□□ 2.43
PNKP-227ENST00000636994 CEP170Q5SW79 1584 aa30.23■■■□□ 2.43
PNKP-227ENST00000636994 ERCC6L2Q5T890 1561 aa30.16■■■□□ 2.42
PNKP-227ENST00000636994 SHROOM2Q13796 1616 aa30.1■■■□□ 2.41
PNKP-227ENST00000636994 JPH4Q96JJ6 628 aa29.95■■■□□ 2.39
PNKP-227ENST00000636994 PRG4Q92954 1404 aaPredicted RBP29.94■■■□□ 2.38
PNKP-227ENST00000636994 IGF1RP08069 1367 aa29.9■■■□□ 2.38
PNKP-227ENST00000636994 KIF27Q86VH2 1401 aa29.89■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms