RNA–Protein interactions for RNA: ENST00000636238.1

CIITA-214, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-214ENST00000636238 NISCHQ9Y2I1 1504 aa18.69■□□□□ 0.58
CIITA-214ENST00000636238 ABCC9O60706 1549 aa17.06■□□□□ 0.32
CIITA-214ENST00000636238 CCDC180Q9P1Z9 1646 aa16.89■□□□□ 0.29
CIITA-214ENST00000636238 RB1CC1Q8TDY2 1594 aa16.23■□□□□ 0.19
CIITA-214ENST00000636238 DNAJC5BQ9UF47 199 aa16.23■□□□□ 0.19
CIITA-214ENST00000636238 NACADO15069 1562 aa16.09■□□□□ 0.17
CIITA-214ENST00000636238 MYO15BQ96JP2 1530 aa15.89■□□□□ 0.13
CIITA-214ENST00000636238 PABPN1Q86U42 306 aaKnown RBP eCLIP15.82■□□□□ 0.12
CIITA-214ENST00000636238 DCAF8L2P0C7V8 631 aa15.75■□□□□ 0.11
CIITA-214ENST00000636238 SHROOM4Q9ULL8 1493 aa15.71■□□□□ 0.11
CIITA-214ENST00000636238 BICRAQ9NZM4 1560 aa15.69■□□□□ 0.1
CIITA-214ENST00000636238 UNC13AQ9UPW8 1703 aa15.61■□□□□ 0.09
CIITA-214ENST00000636238 DCAF1Q9Y4B6 1507 aa15.55■□□□□ 0.08
CIITA-214ENST00000636238 CECR2Q9BXF3 1484 aa15.48■□□□□ 0.07
CIITA-214ENST00000636238 ZCCHC6Q5VYS8 1495 aaKnown RBP15.45■□□□□ 0.06
CIITA-214ENST00000636238 CC2D2AQ9P2K1 1620 aa15.41■□□□□ 0.06
CIITA-214ENST00000636238 EIF4G1Q04637 1599 aaKnown RBP15.36■□□□□ 0.05
CIITA-214ENST00000636238 DNAJC5Q9H3Z4 198 aa15.25■□□□□ 0.03
CIITA-214ENST00000636238 SCRIBQ14160 1630 aa15.24■□□□□ 0.03
CIITA-214ENST00000636238 CUX2O14529 1486 aa14.99□□□□□ -0.01
CIITA-214ENST00000636238 NCAPD3P42695 1498 aa14.89□□□□□ -0.03
CIITA-214ENST00000636238 ERCC6Q03468 1493 aa14.82□□□□□ -0.04
CIITA-214ENST00000636238 ATAD2BQ9ULI0 1458 aa14.74□□□□□ -0.05
CIITA-214ENST00000636238 HMGXB3Q12766 1538 aa14.73□□□□□ -0.05
CIITA-214ENST00000636238 SMARCA2P51531 1590 aa14.72□□□□□ -0.05
CIITA-214ENST00000636238 SMARCA4P51532 1647 aa14.59□□□□□ -0.07
CIITA-214ENST00000636238 BAZ1BQ9UIG0 1483 aaKnown RBP14.57□□□□□ -0.08
CIITA-214ENST00000636238 PEG3Q9GZU2 1588 aa14.56□□□□□ -0.08
CIITA-214ENST00000636238 BAZ1AQ9NRL2 1556 aaPredicted RBP14.56□□□□□ -0.08
CIITA-214ENST00000636238 NESP48681 1621 aa14.55□□□□□ -0.08
CIITA-214ENST00000636238 LAMC3Q9Y6N6 1575 aa14.54□□□□□ -0.08
CIITA-214ENST00000636238 PDS5BQ9NTI5 1447 aa14.52□□□□□ -0.08
CIITA-214ENST00000636238 THOC2Q8NI27 1593 aaKnown RBP14.51□□□□□ -0.09
CIITA-214ENST00000636238 CADPSQ9ULU8 1353 aa14.4□□□□□ -0.1
CIITA-214ENST00000636238 MRC2Q9UBG0 1479 aa14.36□□□□□ -0.11
CIITA-214ENST00000636238 MROH2BQ7Z745 1585 aa14.33□□□□□ -0.12
CIITA-214ENST00000636238 WDR62O43379 1518 aa14.32□□□□□ -0.12
CIITA-214ENST00000636238 TRIM41Q8WV44 630 aa14.31□□□□□ -0.12
CIITA-214ENST00000636238 KIF21AQ7Z4S6 1674 aa14.3□□□□□ -0.12
CIITA-214ENST00000636238 CEP164Q9UPV0 1460 aa14.24□□□□□ -0.13
CIITA-214ENST00000636238 OSCARQ8IYS5 282 aa14.22□□□□□ -0.13
CIITA-214ENST00000636238 FANCD2Q9BXW9 1451 aa14.18□□□□□ -0.14
CIITA-214ENST00000636238 CFTRP13569 1480 aa14.17□□□□□ -0.14
CIITA-214ENST00000636238 WIZO95785 1651 aa14.05□□□□□ -0.16
CIITA-214ENST00000636238 URB2Q14146 1524 aaKnown RBP14.04□□□□□ -0.16
CIITA-214ENST00000636238 TOP2AP11388 1531 aaKnown RBP14.01□□□□□ -0.17
CIITA-214ENST00000636238 IFT140Q96RY7 1462 aa14□□□□□ -0.17
CIITA-214ENST00000636238 RSF1Q96T23 1441 aaPredicted RBP13.99□□□□□ -0.17
CIITA-214ENST00000636238 ABCC8Q09428 1581 aa13.95□□□□□ -0.18
CIITA-214ENST00000636238 RIMBP3CA6NJZ7 1639 aa13.93□□□□□ -0.18
CIITA-214ENST00000636238 RIMBP3BA6NNM3 1639 aa13.93□□□□□ -0.18
CIITA-214ENST00000636238 RIMBP3Q9UFD9 1639 aa13.93□□□□□ -0.18
CIITA-214ENST00000636238 ARHGEF11O15085 1522 aa13.93□□□□□ -0.18
CIITA-214ENST00000636238 ZNF608Q9ULD9 1512 aaPredicted RBP13.88□□□□□ -0.19
CIITA-214ENST00000636238 TOPBP1Q92547 1522 aa13.86□□□□□ -0.19
CIITA-214ENST00000636238 PRDM2Q13029 1718 aa13.83□□□□□ -0.2
CIITA-214ENST00000636238 CCDC88BA6NC98 1476 aa13.82□□□□□ -0.2
CIITA-214ENST00000636238 CYB5RLQ6IPT4 315 aa13.81□□□□□ -0.2
CIITA-214ENST00000636238 DNMBPQ6XZF7 1577 aa13.8□□□□□ -0.2
CIITA-214ENST00000636238 EIF4G3O43432 1585 aaKnown RBP13.79□□□□□ -0.2
CIITA-214ENST00000636238 ARAP1Q96P48 1450 aa13.76□□□□□ -0.21
CIITA-214ENST00000636238 AQRO60306 1485 aaKnown RBP eCLIP13.74□□□□□ -0.21
CIITA-214ENST00000636238 TARBP1Q13395 1621 aaKnown RBP13.73□□□□□ -0.21
CIITA-214ENST00000636238 TRHP20396 242 aaPredicted RBP13.73□□□□□ -0.21
CIITA-214ENST00000636238 WDR97A6NE52 1622 aa13.72□□□□□ -0.21
CIITA-214ENST00000636238 POLA1P09884 1462 aaPredicted RBP13.71□□□□□ -0.21
CIITA-214ENST00000636238 FBLN2P98095 1184 aa13.68□□□□□ -0.22
CIITA-214ENST00000636238 MAGI1Q96QZ7 1491 aaPredicted RBP13.66□□□□□ -0.22
CIITA-214ENST00000636238 SOGA1O94964 1423 aa13.65□□□□□ -0.22
CIITA-214ENST00000636238 CLASP1Q7Z460 1538 aa13.64□□□□□ -0.23
CIITA-214ENST00000636238 CHD1O14646 1710 aa13.64□□□□□ -0.23
CIITA-214ENST00000636238 SYNJ1O43426 1573 aa13.62□□□□□ -0.23
CIITA-214ENST00000636238 CHMP7Q8WUX9 453 aaPredicted RBP13.62□□□□□ -0.23
CIITA-214ENST00000636238 TDRD9Q8NDG6 1382 aaKnown RBP13.61□□□□□ -0.23
CIITA-214ENST00000636238 GRIN2BQ13224 1484 aa13.61□□□□□ -0.23
CIITA-214ENST00000636238 SNAPC4Q5SXM2 1469 aa13.61□□□□□ -0.23
CIITA-214ENST00000636238 RAD54L2Q9Y4B4 1467 aa13.6□□□□□ -0.23
CIITA-214ENST00000636238 SYNJ2O15056 1496 aa13.59□□□□□ -0.23
CIITA-214ENST00000636238 AEBP2Q6ZN18 517 aaPredicted RBP13.58□□□□□ -0.24
CIITA-214ENST00000636238 FGD5Q6ZNL6 1462 aa13.56□□□□□ -0.24
CIITA-214ENST00000636238 GAPVD1Q14C86 1478 aa13.52□□□□□ -0.25
CIITA-214ENST00000636238 CUX1P39880 1505 aa13.49□□□□□ -0.25
CIITA-214ENST00000636238 ABCA10Q8WWZ4 1543 aa13.46□□□□□ -0.25
CIITA-214ENST00000636238 NUP160Q12769 1436 aa13.4□□□□□ -0.26
CIITA-214ENST00000636238 GRIN2AQ12879 1464 aa13.4□□□□□ -0.26
CIITA-214ENST00000636238 ABCA5Q8WWZ7 1642 aa13.39□□□□□ -0.27
CIITA-214ENST00000636238 WRNQ14191 1432 aaPredicted RBP eCLIP13.38□□□□□ -0.27
CIITA-214ENST00000636238 PBRM1Q86U86 1689 aa13.36□□□□□ -0.27
CIITA-214ENST00000636238 FHAD1B1AJZ9 1412 aa13.35□□□□□ -0.27
CIITA-214ENST00000636238 CEP170Q5SW79 1584 aa13.33□□□□□ -0.28
CIITA-214ENST00000636238 ADAMTS12P58397 1594 aa13.32□□□□□ -0.28
CIITA-214ENST00000636238 SHROOM2Q13796 1616 aa13.31□□□□□ -0.28
CIITA-214ENST00000636238 ERICH3Q5RHP9 1530 aa13.29□□□□□ -0.28
CIITA-214ENST00000636238 ERCC6L2Q5T890 1561 aa13.28□□□□□ -0.28
CIITA-214ENST00000636238 PRG4Q92954 1404 aaPredicted RBP13.25□□□□□ -0.29
CIITA-214ENST00000636238 ABCC10Q5T3U5 1492 aa13.24□□□□□ -0.29
CIITA-214ENST00000636238 JPH4Q96JJ6 628 aa13.24□□□□□ -0.29
CIITA-214ENST00000636238 NPM1P06748 294 aaKnown RBP eCLIP13.23□□□□□ -0.29
CIITA-214ENST00000636238 TOP2BQ02880 1626 aa13.23□□□□□ -0.29
CIITA-214ENST00000636238 MAPKBP1O60336 1514 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms