RNA–Protein interactions for RNA: ENST00000636116.1

SYNGAP1-211, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 161 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-211ENST00000636116 NISCHQ9Y2I1 1504 aa18.84■□□□□ 0.61
SYNGAP1-211ENST00000636116 ABCC9O60706 1549 aa17.21■□□□□ 0.34
SYNGAP1-211ENST00000636116 CCDC180Q9P1Z9 1646 aa16.9■□□□□ 0.3
SYNGAP1-211ENST00000636116 DNAJC5BQ9UF47 199 aa16.37■□□□□ 0.21
SYNGAP1-211ENST00000636116 RB1CC1Q8TDY2 1594 aa16.21■□□□□ 0.19
SYNGAP1-211ENST00000636116 DCAF8L2P0C7V8 631 aa16.13■□□□□ 0.17
SYNGAP1-211ENST00000636116 PABPN1Q86U42 306 aaKnown RBP eCLIP16.06■□□□□ 0.16
SYNGAP1-211ENST00000636116 NACADO15069 1562 aa16.05■□□□□ 0.16
SYNGAP1-211ENST00000636116 UNC13AQ9UPW8 1703 aa15.85■□□□□ 0.13
SYNGAP1-211ENST00000636116 BICRAQ9NZM4 1560 aa15.79■□□□□ 0.12
SYNGAP1-211ENST00000636116 MYO15BQ96JP2 1530 aa15.74■□□□□ 0.11
SYNGAP1-211ENST00000636116 ZCCHC6Q5VYS8 1495 aaKnown RBP15.55■□□□□ 0.08
SYNGAP1-211ENST00000636116 DCAF1Q9Y4B6 1507 aa15.49■□□□□ 0.07
SYNGAP1-211ENST00000636116 CECR2Q9BXF3 1484 aa15.49■□□□□ 0.07
SYNGAP1-211ENST00000636116 SCRIBQ14160 1630 aa15.48■□□□□ 0.07
SYNGAP1-211ENST00000636116 CC2D2AQ9P2K1 1620 aa15.48■□□□□ 0.07
SYNGAP1-211ENST00000636116 SHROOM4Q9ULL8 1493 aa15.44■□□□□ 0.06
SYNGAP1-211ENST00000636116 EIF4G1Q04637 1599 aaKnown RBP15.39■□□□□ 0.05
SYNGAP1-211ENST00000636116 DNAJC5Q9H3Z4 198 aa15.11■□□□□ 0.01
SYNGAP1-211ENST00000636116 NCAPD3P42695 1498 aa14.86□□□□□ -0.03
SYNGAP1-211ENST00000636116 ERCC6Q03468 1493 aa14.83□□□□□ -0.03
SYNGAP1-211ENST00000636116 CUX2O14529 1486 aa14.82□□□□□ -0.04
SYNGAP1-211ENST00000636116 ATAD2BQ9ULI0 1458 aa14.81□□□□□ -0.04
SYNGAP1-211ENST00000636116 NESP48681 1621 aa14.74□□□□□ -0.05
SYNGAP1-211ENST00000636116 SMARCA4P51532 1647 aa14.71□□□□□ -0.05
SYNGAP1-211ENST00000636116 SMARCA2P51531 1590 aa14.71□□□□□ -0.05
SYNGAP1-211ENST00000636116 HMGXB3Q12766 1538 aa14.68□□□□□ -0.06
SYNGAP1-211ENST00000636116 BAZ1BQ9UIG0 1483 aaKnown RBP14.64□□□□□ -0.07
SYNGAP1-211ENST00000636116 BAZ1AQ9NRL2 1556 aaPredicted RBP14.6□□□□□ -0.07
SYNGAP1-211ENST00000636116 MROH2BQ7Z745 1585 aa14.55□□□□□ -0.08
SYNGAP1-211ENST00000636116 PEG3Q9GZU2 1588 aa14.54□□□□□ -0.08
SYNGAP1-211ENST00000636116 THOC2Q8NI27 1593 aaKnown RBP14.53□□□□□ -0.08
SYNGAP1-211ENST00000636116 LAMC3Q9Y6N6 1575 aa14.51□□□□□ -0.09
SYNGAP1-211ENST00000636116 KIF21AQ7Z4S6 1674 aa14.48□□□□□ -0.09
SYNGAP1-211ENST00000636116 PDS5BQ9NTI5 1447 aa14.48□□□□□ -0.09
SYNGAP1-211ENST00000636116 TRIM41Q8WV44 630 aa14.42□□□□□ -0.1
SYNGAP1-211ENST00000636116 CADPSQ9ULU8 1353 aa14.42□□□□□ -0.1
SYNGAP1-211ENST00000636116 WIZO95785 1651 aa14.36□□□□□ -0.11
SYNGAP1-211ENST00000636116 MRC2Q9UBG0 1479 aa14.35□□□□□ -0.11
SYNGAP1-211ENST00000636116 WDR62O43379 1518 aa14.3□□□□□ -0.12
SYNGAP1-211ENST00000636116 CEP164Q9UPV0 1460 aa14.26□□□□□ -0.13
SYNGAP1-211ENST00000636116 FANCD2Q9BXW9 1451 aa14.25□□□□□ -0.13
SYNGAP1-211ENST00000636116 CFTRP13569 1480 aa14.2□□□□□ -0.14
SYNGAP1-211ENST00000636116 OSCARQ8IYS5 282 aa14.2□□□□□ -0.14
SYNGAP1-211ENST00000636116 RSF1Q96T23 1441 aaPredicted RBP14.19□□□□□ -0.14
SYNGAP1-211ENST00000636116 URB2Q14146 1524 aaKnown RBP14.15□□□□□ -0.14
SYNGAP1-211ENST00000636116 TOP2AP11388 1531 aaKnown RBP14.12□□□□□ -0.15
SYNGAP1-211ENST00000636116 CCDC88BA6NC98 1476 aa14.03□□□□□ -0.16
SYNGAP1-211ENST00000636116 ZNF608Q9ULD9 1512 aaPredicted RBP14.03□□□□□ -0.16
SYNGAP1-211ENST00000636116 RIMBP3CA6NJZ7 1639 aa13.98□□□□□ -0.17
SYNGAP1-211ENST00000636116 RIMBP3BA6NNM3 1639 aa13.98□□□□□ -0.17
SYNGAP1-211ENST00000636116 RIMBP3Q9UFD9 1639 aa13.98□□□□□ -0.17
SYNGAP1-211ENST00000636116 IFT140Q96RY7 1462 aa13.98□□□□□ -0.17
SYNGAP1-211ENST00000636116 TOPBP1Q92547 1522 aa13.96□□□□□ -0.17
SYNGAP1-211ENST00000636116 PRDM2Q13029 1718 aa13.95□□□□□ -0.18
SYNGAP1-211ENST00000636116 ARHGEF11O15085 1522 aa13.92□□□□□ -0.18
SYNGAP1-211ENST00000636116 CYB5RLQ6IPT4 315 aa13.92□□□□□ -0.18
SYNGAP1-211ENST00000636116 AQRO60306 1485 aaKnown RBP eCLIP13.9□□□□□ -0.18
SYNGAP1-211ENST00000636116 FBLN2P98095 1184 aa13.89□□□□□ -0.19
SYNGAP1-211ENST00000636116 EIF4G3O43432 1585 aaKnown RBP13.88□□□□□ -0.19
SYNGAP1-211ENST00000636116 ABCC8Q09428 1581 aa13.87□□□□□ -0.19
SYNGAP1-211ENST00000636116 DNMBPQ6XZF7 1577 aa13.86□□□□□ -0.19
SYNGAP1-211ENST00000636116 TARBP1Q13395 1621 aaKnown RBP13.83□□□□□ -0.2
SYNGAP1-211ENST00000636116 TRHP20396 242 aaPredicted RBP13.83□□□□□ -0.2
SYNGAP1-211ENST00000636116 CHD1O14646 1710 aa13.81□□□□□ -0.2
SYNGAP1-211ENST00000636116 TDRD9Q8NDG6 1382 aaKnown RBP13.81□□□□□ -0.2
SYNGAP1-211ENST00000636116 POLA1P09884 1462 aaPredicted RBP13.8□□□□□ -0.2
SYNGAP1-211ENST00000636116 RAD54L2Q9Y4B4 1467 aa13.8□□□□□ -0.2
SYNGAP1-211ENST00000636116 ARAP1Q96P48 1450 aa13.79□□□□□ -0.2
SYNGAP1-211ENST00000636116 SOGA1O94964 1423 aa13.78□□□□□ -0.2
SYNGAP1-211ENST00000636116 CHMP7Q8WUX9 453 aaPredicted RBP13.72□□□□□ -0.21
SYNGAP1-211ENST00000636116 SNAPC4Q5SXM2 1469 aa13.7□□□□□ -0.22
SYNGAP1-211ENST00000636116 FGD5Q6ZNL6 1462 aa13.7□□□□□ -0.22
SYNGAP1-211ENST00000636116 CUX1P39880 1505 aa13.66□□□□□ -0.22
SYNGAP1-211ENST00000636116 CLASP1Q7Z460 1538 aa13.64□□□□□ -0.23
SYNGAP1-211ENST00000636116 GRIN2BQ13224 1484 aa13.64□□□□□ -0.23
SYNGAP1-211ENST00000636116 MAGI1Q96QZ7 1491 aaPredicted RBP13.62□□□□□ -0.23
SYNGAP1-211ENST00000636116 SYNJ1O43426 1573 aa13.61□□□□□ -0.23
SYNGAP1-211ENST00000636116 SYNJ2O15056 1496 aa13.6□□□□□ -0.23
SYNGAP1-211ENST00000636116 WDR97A6NE52 1622 aa13.59□□□□□ -0.23
SYNGAP1-211ENST00000636116 GAPVD1Q14C86 1478 aa13.57□□□□□ -0.24
SYNGAP1-211ENST00000636116 SUPT5HO00267 1087 aaKnown RBP13.54□□□□□ -0.24
SYNGAP1-211ENST00000636116 AEBP2Q6ZN18 517 aaPredicted RBP13.53□□□□□ -0.24
SYNGAP1-211ENST00000636116 PBRM1Q86U86 1689 aa13.53□□□□□ -0.24
SYNGAP1-211ENST00000636116 ABCA10Q8WWZ4 1543 aa13.51□□□□□ -0.25
SYNGAP1-211ENST00000636116 ERCC6L2Q5T890 1561 aa13.49□□□□□ -0.25
SYNGAP1-211ENST00000636116 ABCA5Q8WWZ7 1642 aa13.48□□□□□ -0.25
SYNGAP1-211ENST00000636116 GRIN2AQ12879 1464 aa13.46□□□□□ -0.25
SYNGAP1-211ENST00000636116 WRNQ14191 1432 aaPredicted RBP eCLIP13.45□□□□□ -0.26
SYNGAP1-211ENST00000636116 CEP170Q5SW79 1584 aa13.42□□□□□ -0.26
SYNGAP1-211ENST00000636116 NUP160Q12769 1436 aa13.41□□□□□ -0.26
SYNGAP1-211ENST00000636116 ADAMTS12P58397 1594 aa13.4□□□□□ -0.26
SYNGAP1-211ENST00000636116 FHAD1B1AJZ9 1412 aa13.39□□□□□ -0.27
SYNGAP1-211ENST00000636116 TOP2BQ02880 1626 aa13.36□□□□□ -0.27
SYNGAP1-211ENST00000636116 JPH4Q96JJ6 628 aa13.35□□□□□ -0.27
SYNGAP1-211ENST00000636116 PRG4Q92954 1404 aaPredicted RBP13.35□□□□□ -0.27
SYNGAP1-211ENST00000636116 SHROOM2Q13796 1616 aa13.35□□□□□ -0.27
SYNGAP1-211ENST00000636116 BIVM-ERCC5R4GMW8 1640 aa13.35□□□□□ -0.27
SYNGAP1-211ENST00000636116 ERICH3Q5RHP9 1530 aa13.32□□□□□ -0.28
SYNGAP1-211ENST00000636116 FAM69CQ0P6D2 419 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms