RNA–Protein interactions for RNA: ENST00000635450.2

LINC00339-209, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 947 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-209ENST00000635450 NISCHQ9Y2I1 1504 aa38.78■■■■□ 3.8
LINC00339-209ENST00000635450 CCDC180Q9P1Z9 1646 aa34.75■■■■□ 3.15
LINC00339-209ENST00000635450 ABCC9O60706 1549 aa34.48■■■■□ 3.11
LINC00339-209ENST00000635450 RB1CC1Q8TDY2 1594 aa32.87■■■□□ 2.85
LINC00339-209ENST00000635450 NACADO15069 1562 aa32.69■■■□□ 2.82
LINC00339-209ENST00000635450 DCAF8L2P0C7V8 631 aa32.47■■■□□ 2.79
LINC00339-209ENST00000635450 UNC13AQ9UPW8 1703 aa32.37■■■□□ 2.77
LINC00339-209ENST00000635450 MYO15BQ96JP2 1530 aa32.29■■■□□ 2.76
LINC00339-209ENST00000635450 ZCCHC6Q5VYS8 1495 aaKnown RBP32.23■■■□□ 2.75
LINC00339-209ENST00000635450 DNAJC5BQ9UF47 199 aa32.09■■■□□ 2.73
LINC00339-209ENST00000635450 PABPN1Q86U42 306 aaKnown RBP eCLIP32.07■■■□□ 2.72
LINC00339-209ENST00000635450 BICRAQ9NZM4 1560 aa32.04■■■□□ 2.72
LINC00339-209ENST00000635450 DCAF1Q9Y4B6 1507 aa32■■■□□ 2.71
LINC00339-209ENST00000635450 SCRIBQ14160 1630 aa31.73■■■□□ 2.67
LINC00339-209ENST00000635450 SHROOM4Q9ULL8 1493 aa31.45■■■□□ 2.62
LINC00339-209ENST00000635450 CC2D2AQ9P2K1 1620 aa31.19■■■□□ 2.58
LINC00339-209ENST00000635450 EIF4G1Q04637 1599 aaKnown RBP31.17■■■□□ 2.58
LINC00339-209ENST00000635450 CECR2Q9BXF3 1484 aa30.98■■■□□ 2.55
LINC00339-209ENST00000635450 SMARCA4P51532 1647 aa30.26■■■□□ 2.44
LINC00339-209ENST00000635450 NCAPD3P42695 1498 aa30.15■■■□□ 2.42
LINC00339-209ENST00000635450 ATAD2BQ9ULI0 1458 aa30.15■■■□□ 2.42
LINC00339-209ENST00000635450 SMARCA2P51531 1590 aa30.06■■■□□ 2.4
LINC00339-209ENST00000635450 BAZ1AQ9NRL2 1556 aaPredicted RBP30.06■■■□□ 2.4
LINC00339-209ENST00000635450 HMGXB3Q12766 1538 aa30.03■■■□□ 2.4
LINC00339-209ENST00000635450 MROH2BQ7Z745 1585 aa29.94■■■□□ 2.38
LINC00339-209ENST00000635450 PEG3Q9GZU2 1588 aa29.92■■■□□ 2.38
LINC00339-209ENST00000635450 BAZ1BQ9UIG0 1483 aaKnown RBP29.87■■■□□ 2.37
LINC00339-209ENST00000635450 NESP48681 1621 aa29.74■■■□□ 2.35
LINC00339-209ENST00000635450 ERCC6Q03468 1493 aa29.68■■■□□ 2.34
LINC00339-209ENST00000635450 WIZO95785 1651 aa29.64■■■□□ 2.34
LINC00339-209ENST00000635450 CUX2O14529 1486 aa29.52■■■□□ 2.32
LINC00339-209ENST00000635450 LAMC3Q9Y6N6 1575 aa29.48■■■□□ 2.31
LINC00339-209ENST00000635450 KIF21AQ7Z4S6 1674 aa29.44■■■□□ 2.3
LINC00339-209ENST00000635450 THOC2Q8NI27 1593 aaKnown RBP29.43■■■□□ 2.3
LINC00339-209ENST00000635450 RSF1Q96T23 1441 aaPredicted RBP29.35■■■□□ 2.29
LINC00339-209ENST00000635450 CADPSQ9ULU8 1353 aa29.23■■■□□ 2.27
LINC00339-209ENST00000635450 TOP2AP11388 1531 aaKnown RBP29.21■■■□□ 2.27
LINC00339-209ENST00000635450 PDS5BQ9NTI5 1447 aa29.2■■■□□ 2.26
LINC00339-209ENST00000635450 DNAJC5Q9H3Z4 198 aa29.15■■■□□ 2.26
LINC00339-209ENST00000635450 MRC2Q9UBG0 1479 aa29.04■■■□□ 2.24
LINC00339-209ENST00000635450 WDR62O43379 1518 aa29.01■■■□□ 2.23
LINC00339-209ENST00000635450 CFTRP13569 1480 aa29■■■□□ 2.23
LINC00339-209ENST00000635450 FANCD2Q9BXW9 1451 aa28.97■■■□□ 2.23
LINC00339-209ENST00000635450 CEP164Q9UPV0 1460 aa28.97■■■□□ 2.23
LINC00339-209ENST00000635450 PRDM2Q13029 1718 aa28.91■■■□□ 2.22
LINC00339-209ENST00000635450 CCDC88BA6NC98 1476 aa28.85■■■□□ 2.21
LINC00339-209ENST00000635450 URB2Q14146 1524 aaKnown RBP28.78■■■□□ 2.2
LINC00339-209ENST00000635450 TOPBP1Q92547 1522 aa28.48■■■□□ 2.15
LINC00339-209ENST00000635450 DNMBPQ6XZF7 1577 aa28.41■■■□□ 2.14
LINC00339-209ENST00000635450 ZNF608Q9ULD9 1512 aaPredicted RBP28.38■■■□□ 2.13
LINC00339-209ENST00000635450 IFT140Q96RY7 1462 aa28.34■■■□□ 2.13
LINC00339-209ENST00000635450 EIF4G3O43432 1585 aaKnown RBP28.28■■■□□ 2.12
LINC00339-209ENST00000635450 ABCC8Q09428 1581 aa28.28■■■□□ 2.12
LINC00339-209ENST00000635450 TARBP1Q13395 1621 aaKnown RBP28.26■■■□□ 2.11
LINC00339-209ENST00000635450 POLA1P09884 1462 aaPredicted RBP28.21■■■□□ 2.11
LINC00339-209ENST00000635450 SUPT5HO00267 1087 aaKnown RBP28.16■■■□□ 2.1
LINC00339-209ENST00000635450 CUX1P39880 1505 aa28.13■■■□□ 2.09
LINC00339-209ENST00000635450 RAD54L2Q9Y4B4 1467 aa28.11■■■□□ 2.09
LINC00339-209ENST00000635450 AQRO60306 1485 aaKnown RBP eCLIP28.09■■■□□ 2.09
LINC00339-209ENST00000635450 OSCARQ8IYS5 282 aa28.09■■■□□ 2.09
LINC00339-209ENST00000635450 CHD1O14646 1710 aa28.07■■■□□ 2.08
LINC00339-209ENST00000635450 FGD5Q6ZNL6 1462 aa28.07■■■□□ 2.08
LINC00339-209ENST00000635450 TRIM41Q8WV44 630 aa28.04■■■□□ 2.08
LINC00339-209ENST00000635450 WDR97A6NE52 1622 aa27.98■■■□□ 2.07
LINC00339-209ENST00000635450 SOGA1O94964 1423 aa27.98■■■□□ 2.07
LINC00339-209ENST00000635450 RIMBP3CA6NJZ7 1639 aa27.96■■■□□ 2.07
LINC00339-209ENST00000635450 RIMBP3BA6NNM3 1639 aa27.96■■■□□ 2.07
LINC00339-209ENST00000635450 RIMBP3Q9UFD9 1639 aa27.96■■■□□ 2.07
LINC00339-209ENST00000635450 TDRD9Q8NDG6 1382 aaKnown RBP27.94■■■□□ 2.06
LINC00339-209ENST00000635450 SNAPC4Q5SXM2 1469 aa27.85■■■□□ 2.05
LINC00339-209ENST00000635450 ARHGEF11O15085 1522 aa27.85■■■□□ 2.05
LINC00339-209ENST00000635450 PBRM1Q86U86 1689 aa27.82■■■□□ 2.04
LINC00339-209ENST00000635450 ABCA5Q8WWZ7 1642 aa27.76■■■□□ 2.03
LINC00339-209ENST00000635450 BIVM-ERCC5R4GMW8 1640 aa27.76■■■□□ 2.03
LINC00339-209ENST00000635450 SYNJ1O43426 1573 aa27.76■■■□□ 2.03
LINC00339-209ENST00000635450 FBLN2P98095 1184 aa27.75■■■□□ 2.03
LINC00339-209ENST00000635450 GRIN2BQ13224 1484 aa27.74■■■□□ 2.03
LINC00339-209ENST00000635450 ABCA10Q8WWZ4 1543 aa27.72■■■□□ 2.03
LINC00339-209ENST00000635450 MAGI1Q96QZ7 1491 aaPredicted RBP27.72■■■□□ 2.03
LINC00339-209ENST00000635450 TOP2BQ02880 1626 aa27.71■■■□□ 2.03
LINC00339-209ENST00000635450 GAPVD1Q14C86 1478 aa27.69■■■□□ 2.02
LINC00339-209ENST00000635450 CLASP1Q7Z460 1538 aa27.67■■■□□ 2.02
LINC00339-209ENST00000635450 WRNQ14191 1432 aaPredicted RBP eCLIP27.65■■■□□ 2.02
LINC00339-209ENST00000635450 SYNJ2O15056 1496 aa27.64■■■□□ 2.01
LINC00339-209ENST00000635450 ARAP1Q96P48 1450 aa27.62■■■□□ 2.01
LINC00339-209ENST00000635450 CHMP7Q8WUX9 453 aaPredicted RBP27.55■■■□□ 2
LINC00339-209ENST00000635450 ADAMTS12P58397 1594 aa27.53■■■□□ 2
LINC00339-209ENST00000635450 CYB5RLQ6IPT4 315 aa27.49■■□□□ 1.99
LINC00339-209ENST00000635450 GRIN2AQ12879 1464 aa27.43■■□□□ 1.98
LINC00339-209ENST00000635450 CEP170Q5SW79 1584 aa27.4■■□□□ 1.98
LINC00339-209ENST00000635450 ERICH3Q5RHP9 1530 aa27.37■■□□□ 1.97
LINC00339-209ENST00000635450 ERCC6L2Q5T890 1561 aa27.33■■□□□ 1.97
LINC00339-209ENST00000635450 NUP160Q12769 1436 aa27.33■■□□□ 1.96
LINC00339-209ENST00000635450 FHAD1B1AJZ9 1412 aa27.32■■□□□ 1.96
LINC00339-209ENST00000635450 SHROOM2Q13796 1616 aa27.25■■□□□ 1.95
LINC00339-209ENST00000635450 RUSC2Q8N2Y8 1516 aa27.16■■□□□ 1.94
LINC00339-209ENST00000635450 TRHP20396 242 aaPredicted RBP27.07■■□□□ 1.92
LINC00339-209ENST00000635450 CUL7Q14999 1698 aa27.07■■□□□ 1.92
LINC00339-209ENST00000635450 KIF27Q86VH2 1401 aa27.06■■□□□ 1.92
LINC00339-209ENST00000635450 IGF1RP08069 1367 aa27.03■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms