RNA–Protein interactions for RNA: ENST00000635058.2

RHOXF1P3-201, Transcript of Rhox homeobox family member 1 pseudogene 3, humanhuman

BASIC

Gene RHOXF1P3, Length 502 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RHOXF1P3-201ENST00000635058 NISCHQ9Y2I1 1504 aa24.58■■□□□ 1.53
RHOXF1P3-201ENST00000635058 ABCC9O60706 1549 aa22■■□□□ 1.11
RHOXF1P3-201ENST00000635058 CCDC180Q9P1Z9 1646 aa21.93■■□□□ 1.1
RHOXF1P3-201ENST00000635058 RB1CC1Q8TDY2 1594 aa20.95■□□□□ 0.94
RHOXF1P3-201ENST00000635058 DCAF8L2P0C7V8 631 aa20.95■□□□□ 0.94
RHOXF1P3-201ENST00000635058 NACADO15069 1562 aa20.82■□□□□ 0.92
RHOXF1P3-201ENST00000635058 DNAJC5BQ9UF47 199 aa20.61■□□□□ 0.89
RHOXF1P3-201ENST00000635058 PABPN1Q86U42 306 aaKnown RBP eCLIP20.58■□□□□ 0.89
RHOXF1P3-201ENST00000635058 MYO15BQ96JP2 1530 aa20.55■□□□□ 0.88
RHOXF1P3-201ENST00000635058 ZCCHC6Q5VYS8 1495 aaKnown RBP20.34■□□□□ 0.85
RHOXF1P3-201ENST00000635058 DCAF1Q9Y4B6 1507 aa20.3■□□□□ 0.84
RHOXF1P3-201ENST00000635058 UNC13AQ9UPW8 1703 aa20.27■□□□□ 0.83
RHOXF1P3-201ENST00000635058 BICRAQ9NZM4 1560 aa20.24■□□□□ 0.83
RHOXF1P3-201ENST00000635058 SHROOM4Q9ULL8 1493 aa20.07■□□□□ 0.8
RHOXF1P3-201ENST00000635058 SCRIBQ14160 1630 aa20.03■□□□□ 0.8
RHOXF1P3-201ENST00000635058 CECR2Q9BXF3 1484 aa19.84■□□□□ 0.77
RHOXF1P3-201ENST00000635058 CC2D2AQ9P2K1 1620 aa19.81■□□□□ 0.76
RHOXF1P3-201ENST00000635058 EIF4G1Q04637 1599 aaKnown RBP19.79■□□□□ 0.76
RHOXF1P3-201ENST00000635058 NCAPD3P42695 1498 aa19.26■□□□□ 0.67
RHOXF1P3-201ENST00000635058 ATAD2BQ9ULI0 1458 aa19.18■□□□□ 0.66
RHOXF1P3-201ENST00000635058 SMARCA2P51531 1590 aa19.14■□□□□ 0.65
RHOXF1P3-201ENST00000635058 SMARCA4P51532 1647 aa19.11■□□□□ 0.65
RHOXF1P3-201ENST00000635058 BAZ1AQ9NRL2 1556 aaPredicted RBP19.09■□□□□ 0.65
RHOXF1P3-201ENST00000635058 ERCC6Q03468 1493 aa19.05■□□□□ 0.64
RHOXF1P3-201ENST00000635058 HMGXB3Q12766 1538 aa19.05■□□□□ 0.64
RHOXF1P3-201ENST00000635058 BAZ1BQ9UIG0 1483 aaKnown RBP19.02■□□□□ 0.63
RHOXF1P3-201ENST00000635058 DNAJC5Q9H3Z4 198 aa18.96■□□□□ 0.63
RHOXF1P3-201ENST00000635058 CUX2O14529 1486 aa18.95■□□□□ 0.62
RHOXF1P3-201ENST00000635058 MROH2BQ7Z745 1585 aa18.92■□□□□ 0.62
RHOXF1P3-201ENST00000635058 PEG3Q9GZU2 1588 aa18.92■□□□□ 0.62
RHOXF1P3-201ENST00000635058 NESP48681 1621 aa18.88■□□□□ 0.61
RHOXF1P3-201ENST00000635058 PDS5BQ9NTI5 1447 aa18.77■□□□□ 0.6
RHOXF1P3-201ENST00000635058 LAMC3Q9Y6N6 1575 aa18.76■□□□□ 0.59
RHOXF1P3-201ENST00000635058 CADPSQ9ULU8 1353 aa18.72■□□□□ 0.59
RHOXF1P3-201ENST00000635058 WIZO95785 1651 aa18.65■□□□□ 0.58
RHOXF1P3-201ENST00000635058 RSF1Q96T23 1441 aaPredicted RBP18.6■□□□□ 0.57
RHOXF1P3-201ENST00000635058 THOC2Q8NI27 1593 aaKnown RBP18.59■□□□□ 0.57
RHOXF1P3-201ENST00000635058 KIF21AQ7Z4S6 1674 aa18.54■□□□□ 0.56
RHOXF1P3-201ENST00000635058 MRC2Q9UBG0 1479 aa18.52■□□□□ 0.55
RHOXF1P3-201ENST00000635058 CEP164Q9UPV0 1460 aa18.47■□□□□ 0.55
RHOXF1P3-201ENST00000635058 CFTRP13569 1480 aa18.46■□□□□ 0.55
RHOXF1P3-201ENST00000635058 FANCD2Q9BXW9 1451 aa18.46■□□□□ 0.55
RHOXF1P3-201ENST00000635058 TOP2AP11388 1531 aaKnown RBP18.46■□□□□ 0.55
RHOXF1P3-201ENST00000635058 WDR62O43379 1518 aa18.41■□□□□ 0.54
RHOXF1P3-201ENST00000635058 CCDC88BA6NC98 1476 aa18.3■□□□□ 0.52
RHOXF1P3-201ENST00000635058 URB2Q14146 1524 aaKnown RBP18.25■□□□□ 0.51
RHOXF1P3-201ENST00000635058 OSCARQ8IYS5 282 aa18.24■□□□□ 0.51
RHOXF1P3-201ENST00000635058 TRIM41Q8WV44 630 aa18.18■□□□□ 0.5
RHOXF1P3-201ENST00000635058 ABCC8Q09428 1581 aa18.13■□□□□ 0.49
RHOXF1P3-201ENST00000635058 IFT140Q96RY7 1462 aa18.12■□□□□ 0.49
RHOXF1P3-201ENST00000635058 PRDM2Q13029 1718 aa18.09■□□□□ 0.49
RHOXF1P3-201ENST00000635058 TOPBP1Q92547 1522 aa18.08■□□□□ 0.49
RHOXF1P3-201ENST00000635058 ZNF608Q9ULD9 1512 aaPredicted RBP18.03■□□□□ 0.48
RHOXF1P3-201ENST00000635058 DNMBPQ6XZF7 1577 aa18■□□□□ 0.47
RHOXF1P3-201ENST00000635058 SUPT5HO00267 1087 aaKnown RBP17.96■□□□□ 0.47
RHOXF1P3-201ENST00000635058 FBLN2P98095 1184 aa17.93■□□□□ 0.46
RHOXF1P3-201ENST00000635058 AQRO60306 1485 aaKnown RBP eCLIP17.93■□□□□ 0.46
RHOXF1P3-201ENST00000635058 SOGA1O94964 1423 aa17.91■□□□□ 0.46
RHOXF1P3-201ENST00000635058 POLA1P09884 1462 aaPredicted RBP17.9■□□□□ 0.46
RHOXF1P3-201ENST00000635058 EIF4G3O43432 1585 aaKnown RBP17.87■□□□□ 0.45
RHOXF1P3-201ENST00000635058 TDRD9Q8NDG6 1382 aaKnown RBP17.86■□□□□ 0.45
RHOXF1P3-201ENST00000635058 RAD54L2Q9Y4B4 1467 aa17.86■□□□□ 0.45
RHOXF1P3-201ENST00000635058 TARBP1Q13395 1621 aaKnown RBP17.85■□□□□ 0.45
RHOXF1P3-201ENST00000635058 CHMP7Q8WUX9 453 aaPredicted RBP17.81■□□□□ 0.44
RHOXF1P3-201ENST00000635058 FGD5Q6ZNL6 1462 aa17.8■□□□□ 0.44
RHOXF1P3-201ENST00000635058 CYB5RLQ6IPT4 315 aa17.79■□□□□ 0.44
RHOXF1P3-201ENST00000635058 ARHGEF11O15085 1522 aa17.77■□□□□ 0.43
RHOXF1P3-201ENST00000635058 RIMBP3CA6NJZ7 1639 aa17.76■□□□□ 0.43
RHOXF1P3-201ENST00000635058 RIMBP3BA6NNM3 1639 aa17.76■□□□□ 0.43
RHOXF1P3-201ENST00000635058 RIMBP3Q9UFD9 1639 aa17.76■□□□□ 0.43
RHOXF1P3-201ENST00000635058 CUX1P39880 1505 aa17.76■□□□□ 0.43
RHOXF1P3-201ENST00000635058 GRIN2BQ13224 1484 aa17.72■□□□□ 0.43
RHOXF1P3-201ENST00000635058 WDR97A6NE52 1622 aa17.72■□□□□ 0.43
RHOXF1P3-201ENST00000635058 SNAPC4Q5SXM2 1469 aa17.71■□□□□ 0.43
RHOXF1P3-201ENST00000635058 MAGI1Q96QZ7 1491 aaPredicted RBP17.69■□□□□ 0.42
RHOXF1P3-201ENST00000635058 CHD1O14646 1710 aa17.67■□□□□ 0.42
RHOXF1P3-201ENST00000635058 GAPVD1Q14C86 1478 aa17.65■□□□□ 0.42
RHOXF1P3-201ENST00000635058 WRNQ14191 1432 aaPredicted RBP eCLIP17.64■□□□□ 0.41
RHOXF1P3-201ENST00000635058 SYNJ2O15056 1496 aa17.63■□□□□ 0.41
RHOXF1P3-201ENST00000635058 TRHP20396 242 aaPredicted RBP17.62■□□□□ 0.41
RHOXF1P3-201ENST00000635058 ABCA10Q8WWZ4 1543 aa17.62■□□□□ 0.41
RHOXF1P3-201ENST00000635058 SYNJ1O43426 1573 aa17.6■□□□□ 0.41
RHOXF1P3-201ENST00000635058 ARAP1Q96P48 1450 aa17.58■□□□□ 0.41
RHOXF1P3-201ENST00000635058 CLASP1Q7Z460 1538 aa17.53■□□□□ 0.4
RHOXF1P3-201ENST00000635058 TOP2BQ02880 1626 aa17.49■□□□□ 0.39
RHOXF1P3-201ENST00000635058 ABCA5Q8WWZ7 1642 aa17.49■□□□□ 0.39
RHOXF1P3-201ENST00000635058 PBRM1Q86U86 1689 aa17.48■□□□□ 0.39
RHOXF1P3-201ENST00000635058 GRIN2AQ12879 1464 aa17.45■□□□□ 0.38
RHOXF1P3-201ENST00000635058 FHAD1B1AJZ9 1412 aa17.45■□□□□ 0.38
RHOXF1P3-201ENST00000635058 BIVM-ERCC5R4GMW8 1640 aa17.44■□□□□ 0.38
RHOXF1P3-201ENST00000635058 ERICH3Q5RHP9 1530 aa17.39■□□□□ 0.37
RHOXF1P3-201ENST00000635058 NUP160Q12769 1436 aa17.38■□□□□ 0.37
RHOXF1P3-201ENST00000635058 ADAMTS12P58397 1594 aa17.36■□□□□ 0.37
RHOXF1P3-201ENST00000635058 JPH4Q96JJ6 628 aa17.34■□□□□ 0.37
RHOXF1P3-201ENST00000635058 CEP170Q5SW79 1584 aa17.32■□□□□ 0.36
RHOXF1P3-201ENST00000635058 KIF27Q86VH2 1401 aa17.28■□□□□ 0.36
RHOXF1P3-201ENST00000635058 PRG4Q92954 1404 aaPredicted RBP17.28■□□□□ 0.36
RHOXF1P3-201ENST00000635058 IGF1RP08069 1367 aa17.26■□□□□ 0.35
RHOXF1P3-201ENST00000635058 ERCC6L2Q5T890 1561 aa17.25■□□□□ 0.35
RHOXF1P3-201ENST00000635058 NPM1P06748 294 aaKnown RBP eCLIP17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms