RNA–Protein interactions for RNA: ENST00000634363.1

SNRNP48-203, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

TSL 2

Gene SNRNP48, Length 781 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-203ENST00000634363 NISCHQ9Y2I1 1504 aa38.78■■■■□ 3.8
SNRNP48-203ENST00000634363 ABCC9O60706 1549 aa35.1■■■■□ 3.21
SNRNP48-203ENST00000634363 CCDC180Q9P1Z9 1646 aa34.81■■■■□ 3.16
SNRNP48-203ENST00000634363 RB1CC1Q8TDY2 1594 aa33.26■■■□□ 2.92
SNRNP48-203ENST00000634363 DCAF8L2P0C7V8 631 aa33.07■■■□□ 2.88
SNRNP48-203ENST00000634363 DNAJC5BQ9UF47 199 aa33.07■■■□□ 2.88
SNRNP48-203ENST00000634363 NACADO15069 1562 aa32.97■■■□□ 2.87
SNRNP48-203ENST00000634363 PABPN1Q86U42 306 aaKnown RBP eCLIP32.72■■■□□ 2.83
SNRNP48-203ENST00000634363 UNC13AQ9UPW8 1703 aa32.54■■■□□ 2.8
SNRNP48-203ENST00000634363 MYO15BQ96JP2 1530 aa32.38■■■□□ 2.77
SNRNP48-203ENST00000634363 BICRAQ9NZM4 1560 aa32.28■■■□□ 2.76
SNRNP48-203ENST00000634363 ZCCHC6Q5VYS8 1495 aaKnown RBP32.06■■■□□ 2.72
SNRNP48-203ENST00000634363 DCAF1Q9Y4B6 1507 aa31.93■■■□□ 2.7
SNRNP48-203ENST00000634363 SCRIBQ14160 1630 aa31.82■■■□□ 2.68
SNRNP48-203ENST00000634363 SHROOM4Q9ULL8 1493 aa31.72■■■□□ 2.67
SNRNP48-203ENST00000634363 CC2D2AQ9P2K1 1620 aa31.65■■■□□ 2.66
SNRNP48-203ENST00000634363 CECR2Q9BXF3 1484 aa31.59■■■□□ 2.65
SNRNP48-203ENST00000634363 EIF4G1Q04637 1599 aaKnown RBP31.51■■■□□ 2.64
SNRNP48-203ENST00000634363 DNAJC5Q9H3Z4 198 aa30.45■■■□□ 2.47
SNRNP48-203ENST00000634363 NCAPD3P42695 1498 aa30.44■■■□□ 2.46
SNRNP48-203ENST00000634363 ATAD2BQ9ULI0 1458 aa30.35■■■□□ 2.45
SNRNP48-203ENST00000634363 ERCC6Q03468 1493 aa30.31■■■□□ 2.44
SNRNP48-203ENST00000634363 SMARCA4P51532 1647 aa30.29■■■□□ 2.44
SNRNP48-203ENST00000634363 SMARCA2P51531 1590 aa30.25■■■□□ 2.43
SNRNP48-203ENST00000634363 CUX2O14529 1486 aa30.2■■■□□ 2.43
SNRNP48-203ENST00000634363 HMGXB3Q12766 1538 aa30.17■■■□□ 2.42
SNRNP48-203ENST00000634363 BAZ1AQ9NRL2 1556 aaPredicted RBP30.11■■■□□ 2.41
SNRNP48-203ENST00000634363 NESP48681 1621 aa30.1■■■□□ 2.41
SNRNP48-203ENST00000634363 BAZ1BQ9UIG0 1483 aaKnown RBP30.08■■■□□ 2.41
SNRNP48-203ENST00000634363 MROH2BQ7Z745 1585 aa29.91■■■□□ 2.38
SNRNP48-203ENST00000634363 PEG3Q9GZU2 1588 aa29.91■■■□□ 2.38
SNRNP48-203ENST00000634363 LAMC3Q9Y6N6 1575 aa29.79■■■□□ 2.36
SNRNP48-203ENST00000634363 THOC2Q8NI27 1593 aaKnown RBP29.73■■■□□ 2.35
SNRNP48-203ENST00000634363 KIF21AQ7Z4S6 1674 aa29.69■■■□□ 2.34
SNRNP48-203ENST00000634363 PDS5BQ9NTI5 1447 aa29.66■■■□□ 2.34
SNRNP48-203ENST00000634363 WIZO95785 1651 aa29.59■■■□□ 2.33
SNRNP48-203ENST00000634363 CADPSQ9ULU8 1353 aa29.55■■■□□ 2.32
SNRNP48-203ENST00000634363 MRC2Q9UBG0 1479 aa29.39■■■□□ 2.3
SNRNP48-203ENST00000634363 WDR62O43379 1518 aa29.29■■■□□ 2.28
SNRNP48-203ENST00000634363 CEP164Q9UPV0 1460 aa29.27■■■□□ 2.28
SNRNP48-203ENST00000634363 RSF1Q96T23 1441 aaPredicted RBP29.23■■■□□ 2.27
SNRNP48-203ENST00000634363 FANCD2Q9BXW9 1451 aa29.23■■■□□ 2.27
SNRNP48-203ENST00000634363 TRIM41Q8WV44 630 aa29.18■■■□□ 2.26
SNRNP48-203ENST00000634363 CFTRP13569 1480 aa29.15■■■□□ 2.26
SNRNP48-203ENST00000634363 TOP2AP11388 1531 aaKnown RBP29.12■■■□□ 2.25
SNRNP48-203ENST00000634363 URB2Q14146 1524 aaKnown RBP28.98■■■□□ 2.23
SNRNP48-203ENST00000634363 OSCARQ8IYS5 282 aa28.94■■■□□ 2.22
SNRNP48-203ENST00000634363 PRDM2Q13029 1718 aa28.86■■■□□ 2.21
SNRNP48-203ENST00000634363 CCDC88BA6NC98 1476 aa28.85■■■□□ 2.21
SNRNP48-203ENST00000634363 ZNF608Q9ULD9 1512 aaPredicted RBP28.68■■■□□ 2.18
SNRNP48-203ENST00000634363 IFT140Q96RY7 1462 aa28.66■■■□□ 2.18
SNRNP48-203ENST00000634363 TOPBP1Q92547 1522 aa28.64■■■□□ 2.18
SNRNP48-203ENST00000634363 ABCC8Q09428 1581 aa28.56■■■□□ 2.16
SNRNP48-203ENST00000634363 RIMBP3CA6NJZ7 1639 aa28.51■■■□□ 2.15
SNRNP48-203ENST00000634363 RIMBP3BA6NNM3 1639 aa28.51■■■□□ 2.15
SNRNP48-203ENST00000634363 RIMBP3Q9UFD9 1639 aa28.51■■■□□ 2.15
SNRNP48-203ENST00000634363 DNMBPQ6XZF7 1577 aa28.5■■■□□ 2.15
SNRNP48-203ENST00000634363 EIF4G3O43432 1585 aaKnown RBP28.48■■■□□ 2.15
SNRNP48-203ENST00000634363 AQRO60306 1485 aaKnown RBP eCLIP28.43■■■□□ 2.143e-11■■■■■ 34.1
SNRNP48-203ENST00000634363 FBLN2P98095 1184 aa28.39■■■□□ 2.14
SNRNP48-203ENST00000634363 ARHGEF11O15085 1522 aa28.38■■■□□ 2.13
SNRNP48-203ENST00000634363 TARBP1Q13395 1621 aaKnown RBP28.38■■■□□ 2.13
SNRNP48-203ENST00000634363 CHD1O14646 1710 aa28.34■■■□□ 2.13
SNRNP48-203ENST00000634363 POLA1P09884 1462 aaPredicted RBP28.34■■■□□ 2.13
SNRNP48-203ENST00000634363 CYB5RLQ6IPT4 315 aa28.32■■■□□ 2.12
SNRNP48-203ENST00000634363 RAD54L2Q9Y4B4 1467 aa28.29■■■□□ 2.12
SNRNP48-203ENST00000634363 SOGA1O94964 1423 aa28.26■■■□□ 2.12
SNRNP48-203ENST00000634363 TDRD9Q8NDG6 1382 aaKnown RBP28.25■■■□□ 2.11
SNRNP48-203ENST00000634363 FGD5Q6ZNL6 1462 aa28.16■■■□□ 2.1
SNRNP48-203ENST00000634363 CUX1P39880 1505 aa28.1■■■□□ 2.09
SNRNP48-203ENST00000634363 TRHP20396 242 aaPredicted RBP28.1■■■□□ 2.09
SNRNP48-203ENST00000634363 CHMP7Q8WUX9 453 aaPredicted RBP28.1■■■□□ 2.09
SNRNP48-203ENST00000634363 SNAPC4Q5SXM2 1469 aa28.09■■■□□ 2.09
SNRNP48-203ENST00000634363 ARAP1Q96P48 1450 aa28.08■■■□□ 2.09
SNRNP48-203ENST00000634363 SUPT5HO00267 1087 aaKnown RBP28.03■■■□□ 2.08
SNRNP48-203ENST00000634363 WDR97A6NE52 1622 aa28.01■■■□□ 2.07
SNRNP48-203ENST00000634363 GRIN2BQ13224 1484 aa27.99■■■□□ 2.07
SNRNP48-203ENST00000634363 MAGI1Q96QZ7 1491 aaPredicted RBP27.97■■■□□ 2.07
SNRNP48-203ENST00000634363 SYNJ1O43426 1573 aa27.94■■■□□ 2.06
SNRNP48-203ENST00000634363 CLASP1Q7Z460 1538 aa27.92■■■□□ 2.06
SNRNP48-203ENST00000634363 SYNJ2O15056 1496 aa27.9■■■□□ 2.06
SNRNP48-203ENST00000634363 GAPVD1Q14C86 1478 aa27.89■■■□□ 2.06
SNRNP48-203ENST00000634363 PBRM1Q86U86 1689 aa27.88■■■□□ 2.05
SNRNP48-203ENST00000634363 ABCA10Q8WWZ4 1543 aa27.78■■■□□ 2.04
SNRNP48-203ENST00000634363 ABCA5Q8WWZ7 1642 aa27.75■■■□□ 2.03
SNRNP48-203ENST00000634363 WRNQ14191 1432 aaPredicted RBP eCLIP27.7■■■□□ 2.03
SNRNP48-203ENST00000634363 GRIN2AQ12879 1464 aa27.62■■■□□ 2.01
SNRNP48-203ENST00000634363 TOP2BQ02880 1626 aa27.59■■■□□ 2.01
SNRNP48-203ENST00000634363 BIVM-ERCC5R4GMW8 1640 aa27.59■■■□□ 2.01
SNRNP48-203ENST00000634363 ERCC6L2Q5T890 1561 aa27.56■■■□□ 2
SNRNP48-203ENST00000634363 ADAMTS12P58397 1594 aa27.55■■■□□ 2
SNRNP48-203ENST00000634363 CEP170Q5SW79 1584 aa27.53■■■□□ 2
SNRNP48-203ENST00000634363 FHAD1B1AJZ9 1412 aa27.5■■□□□ 1.99
SNRNP48-203ENST00000634363 NUP160Q12769 1436 aa27.5■■□□□ 1.99
SNRNP48-203ENST00000634363 ERICH3Q5RHP9 1530 aa27.44■■□□□ 1.98
SNRNP48-203ENST00000634363 AEBP2Q6ZN18 517 aaPredicted RBP27.39■■□□□ 1.98
SNRNP48-203ENST00000634363 SHROOM2Q13796 1616 aa27.38■■□□□ 1.97
SNRNP48-203ENST00000634363 JPH4Q96JJ6 628 aa27.35■■□□□ 1.97
SNRNP48-203ENST00000634363 PRG4Q92954 1404 aaPredicted RBP27.33■■□□□ 1.97
SNRNP48-203ENST00000634363 RUSC2Q8N2Y8 1516 aa27.17■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 111.4 ms