RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 NISCHQ9Y2I1 1504 aa34.61■■■■□ 3.13
LIMS3-206ENST00000631420 CCDC180Q9P1Z9 1646 aa30.33■■■□□ 2.45
LIMS3-206ENST00000631420 ABCC9O60706 1549 aa29.31■■■□□ 2.28
LIMS3-206ENST00000631420 ZCCHC6Q5VYS8 1495 aaKnown RBP28.94■■■□□ 2.22
LIMS3-206ENST00000631420 DCAF8L2P0C7V8 631 aa28.87■■■□□ 2.21
LIMS3-206ENST00000631420 DCAF1Q9Y4B6 1507 aa28.58■■■□□ 2.16
LIMS3-206ENST00000631420 NACADO15069 1562 aa28.44■■■□□ 2.14
LIMS3-206ENST00000631420 MYO15BQ96JP2 1530 aa28.44■■■□□ 2.14
LIMS3-206ENST00000631420 RB1CC1Q8TDY2 1594 aa28.32■■■□□ 2.12
LIMS3-206ENST00000631420 SHROOM4Q9ULL8 1493 aa27.91■■■□□ 2.06
LIMS3-206ENST00000631420 SCRIBQ14160 1630 aa27.88■■■□□ 2.05
LIMS3-206ENST00000631420 UNC13AQ9UPW8 1703 aa27.67■■■□□ 2.02
LIMS3-206ENST00000631420 PABPN1Q86U42 306 aaKnown RBP eCLIP27.6■■■□□ 2.01
LIMS3-206ENST00000631420 BICRAQ9NZM4 1560 aa27.51■■□□□ 1.99
LIMS3-206ENST00000631420 CECR2Q9BXF3 1484 aa26.98■■□□□ 1.91
LIMS3-206ENST00000631420 MROH2BQ7Z745 1585 aa26.74■■□□□ 1.87
LIMS3-206ENST00000631420 BAZ1AQ9NRL2 1556 aaPredicted RBP26.73■■□□□ 1.87
LIMS3-206ENST00000631420 EIF4G1Q04637 1599 aaKnown RBP26.72■■□□□ 1.87
LIMS3-206ENST00000631420 SMARCA4P51532 1647 aa26.68■■□□□ 1.86
LIMS3-206ENST00000631420 RSF1Q96T23 1441 aaPredicted RBP26.68■■□□□ 1.86
LIMS3-206ENST00000631420 SUPT5HO00267 1087 aaKnown RBP26.6■■□□□ 1.85
LIMS3-206ENST00000631420 CC2D2AQ9P2K1 1620 aa26.46■■□□□ 1.83
LIMS3-206ENST00000631420 WIZO95785 1651 aa26.45■■□□□ 1.82
LIMS3-206ENST00000631420 DNAJC5BQ9UF47 199 aa26.45■■□□□ 1.82
LIMS3-206ENST00000631420 ATAD2BQ9ULI0 1458 aa26.44■■□□□ 1.82
LIMS3-206ENST00000631420 PEG3Q9GZU2 1588 aa26.37■■□□□ 1.81
LIMS3-206ENST00000631420 SMARCA2P51531 1590 aa26.35■■□□□ 1.81
LIMS3-206ENST00000631420 NCAPD3P42695 1498 aa26.3■■□□□ 1.8
LIMS3-206ENST00000631420 BAZ1BQ9UIG0 1483 aaKnown RBP26.23■■□□□ 1.79
LIMS3-206ENST00000631420 HMGXB3Q12766 1538 aa26.16■■□□□ 1.78
LIMS3-206ENST00000631420 TOP2AP11388 1531 aaKnown RBP26.15■■□□□ 1.78
LIMS3-206ENST00000631420 CCDC88BA6NC98 1476 aa25.93■■□□□ 1.74
LIMS3-206ENST00000631420 CADPSQ9ULU8 1353 aa25.61■■□□□ 1.69
LIMS3-206ENST00000631420 CFTRP13569 1480 aa25.56■■□□□ 1.68
LIMS3-206ENST00000631420 NESP48681 1621 aa25.56■■□□□ 1.68
LIMS3-206ENST00000631420 LAMC3Q9Y6N6 1575 aa25.44■■□□□ 1.66
LIMS3-206ENST00000631420 PDS5BQ9NTI5 1447 aa25.31■■□□□ 1.64
LIMS3-206ENST00000631420 FANCD2Q9BXW9 1451 aa25.3■■□□□ 1.64
LIMS3-206ENST00000631420 PRDM2Q13029 1718 aa25.24■■□□□ 1.63
LIMS3-206ENST00000631420 ABCC8Q09428 1581 aa25.18■■□□□ 1.62
LIMS3-206ENST00000631420 CHIC1Q5VXU3 224 aa25.18■■□□□ 1.62
LIMS3-206ENST00000631420 CEP164Q9UPV0 1460 aa25.17■■□□□ 1.62
LIMS3-206ENST00000631420 ERCC6Q03468 1493 aa25.15■■□□□ 1.62
LIMS3-206ENST00000631420 KIF21AQ7Z4S6 1674 aa25.15■■□□□ 1.62
LIMS3-206ENST00000631420 WRNQ14191 1432 aaPredicted RBP eCLIP25.1■■□□□ 1.61
LIMS3-206ENST00000631420 TRIM41Q8WV44 630 aa25.04■■□□□ 1.6
LIMS3-206ENST00000631420 CUX1P39880 1505 aa25.02■■□□□ 1.6
LIMS3-206ENST00000631420 URB2Q14146 1524 aaKnown RBP25.02■■□□□ 1.6
LIMS3-206ENST00000631420 MRC2Q9UBG0 1479 aa25■■□□□ 1.59
LIMS3-206ENST00000631420 SYNJ1O43426 1573 aa24.99■■□□□ 1.59
LIMS3-206ENST00000631420 TOPBP1Q92547 1522 aa24.95■■□□□ 1.59
LIMS3-206ENST00000631420 DNMBPQ6XZF7 1577 aa24.93■■□□□ 1.58
LIMS3-206ENST00000631420 TOP2BQ02880 1626 aa24.91■■□□□ 1.58
LIMS3-206ENST00000631420 THOC2Q8NI27 1593 aaKnown RBP24.9■■□□□ 1.58
LIMS3-206ENST00000631420 BIVM-ERCC5R4GMW8 1640 aa24.87■■□□□ 1.57
LIMS3-206ENST00000631420 WDR62O43379 1518 aa24.87■■□□□ 1.57
LIMS3-206ENST00000631420 FGD5Q6ZNL6 1462 aa24.83■■□□□ 1.57
LIMS3-206ENST00000631420 POLA1P09884 1462 aaPredicted RBP24.8■■□□□ 1.56
LIMS3-206ENST00000631420 RAD54L2Q9Y4B4 1467 aa24.75■■□□□ 1.55
LIMS3-206ENST00000631420 SOGA1O94964 1423 aa24.74■■□□□ 1.55
LIMS3-206ENST00000631420 CUX2O14529 1486 aa24.72■■□□□ 1.55
LIMS3-206ENST00000631420 IFT140Q96RY7 1462 aa24.62■■□□□ 1.53
LIMS3-206ENST00000631420 RUSC2Q8N2Y8 1516 aa24.6■■□□□ 1.53
LIMS3-206ENST00000631420 TARBP1Q13395 1621 aaKnown RBP24.6■■□□□ 1.53
LIMS3-206ENST00000631420 ABCA10Q8WWZ4 1543 aa24.6■■□□□ 1.53
LIMS3-206ENST00000631420 FAM9AQ8IZU1 332 aaPredicted RBP24.59■■□□□ 1.53
LIMS3-206ENST00000631420 TDRD9Q8NDG6 1382 aaKnown RBP24.58■■□□□ 1.52
LIMS3-206ENST00000631420 ZNF608Q9ULD9 1512 aaPredicted RBP24.53■■□□□ 1.52
LIMS3-206ENST00000631420 KIF27Q86VH2 1401 aa24.51■■□□□ 1.51
LIMS3-206ENST00000631420 AQRO60306 1485 aaKnown RBP eCLIP24.51■■□□□ 1.51
LIMS3-206ENST00000631420 WDR97A6NE52 1622 aa24.49■■□□□ 1.51
LIMS3-206ENST00000631420 GAPVD1Q14C86 1478 aa24.44■■□□□ 1.5
LIMS3-206ENST00000631420 CSRNP3Q8WYN3 585 aa24.43■■□□□ 1.5
LIMS3-206ENST00000631420 IGF1RP08069 1367 aa24.41■■□□□ 1.5
LIMS3-206ENST00000631420 EEA1Q15075 1411 aa24.41■■□□□ 1.5
LIMS3-206ENST00000631420 ABCA5Q8WWZ7 1642 aa24.4■■□□□ 1.5
LIMS3-206ENST00000631420 EIF4G3O43432 1585 aaKnown RBP24.36■■□□□ 1.49
LIMS3-206ENST00000631420 GRIN2BQ13224 1484 aa24.32■■□□□ 1.48
LIMS3-206ENST00000631420 EHMT2Q96KQ7 1210 aa24.28■■□□□ 1.48
LIMS3-206ENST00000631420 ERICH3Q5RHP9 1530 aa24.27■■□□□ 1.48
LIMS3-206ENST00000631420 CARMIL1Q5VZK9 1371 aa24.25■■□□□ 1.47
LIMS3-206ENST00000631420 PBRM1Q86U86 1689 aa24.24■■□□□ 1.47
LIMS3-206ENST00000631420 LOC105371045A0A1W2PR82 267 aa24.23■■□□□ 1.47
LIMS3-206ENST00000631420 SNAPC4Q5SXM2 1469 aa24.23■■□□□ 1.47
LIMS3-206ENST00000631420 PRXQ9BXM0 1461 aa24.22■■□□□ 1.47
LIMS3-206ENST00000631420 FHAD1B1AJZ9 1412 aa24.16■■□□□ 1.46
LIMS3-206ENST00000631420 MAGI1Q96QZ7 1491 aaPredicted RBP24.15■■□□□ 1.46
LIMS3-206ENST00000631420 RAPGEF2Q9Y4G8 1499 aa24.14■■□□□ 1.46
LIMS3-206ENST00000631420 FBLN2P98095 1184 aa24.13■■□□□ 1.45
LIMS3-206ENST00000631420 CUL7Q14999 1698 aa24.12■■□□□ 1.45
LIMS3-206ENST00000631420 ADAMTS12P58397 1594 aa24.12■■□□□ 1.45
LIMS3-206ENST00000631420 CHMP7Q8WUX9 453 aaPredicted RBP24.12■■□□□ 1.45
LIMS3-206ENST00000631420 KIF21BO75037 1637 aa24.1■■□□□ 1.45
LIMS3-206ENST00000631420 SYNJ2O15056 1496 aa24.08■■□□□ 1.45
LIMS3-206ENST00000631420 GOLGA3Q08378 1498 aa24.06■■□□□ 1.44
LIMS3-206ENST00000631420 UBTFP17480 764 aaKnown RBP24.06■■□□□ 1.44
LIMS3-206ENST00000631420 GRIN2AQ12879 1464 aa24.02■■□□□ 1.44
LIMS3-206ENST00000631420 TNIKQ9UKE5 1360 aa23.92■■□□□ 1.42
LIMS3-206ENST00000631420 CHD1O14646 1710 aa23.91■■□□□ 1.42
LIMS3-206ENST00000631420 NUP160Q12769 1436 aa23.88■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms