RNA–Protein interactions for RNA: ENST00000629912.1

NEK3-211, Transcript of NIMA related kinase 3, humanhuman

TSL 5 BASIC

Gene NEK3, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-211ENST00000629912 NISCHQ9Y2I1 1504 aa12.27□□□□□ -0.45
NEK3-211ENST00000629912 CCDC180Q9P1Z9 1646 aa10.62□□□□□ -0.71
NEK3-211ENST00000629912 ZCCHC6Q5VYS8 1495 aaKnown RBP10.3□□□□□ -0.76
NEK3-211ENST00000629912 DCAF1Q9Y4B6 1507 aa10.17□□□□□ -0.78
NEK3-211ENST00000629912 DCAF8L2P0C7V8 631 aa10.05□□□□□ -0.8
NEK3-211ENST00000629912 SHROOM4Q9ULL8 1493 aa10.02□□□□□ -0.81
NEK3-211ENST00000629912 MYO15BQ96JP2 1530 aa10.01□□□□□ -0.81
NEK3-211ENST00000629912 NACADO15069 1562 aa9.88□□□□□ -0.83
NEK3-211ENST00000629912 ABCC9O60706 1549 aa9.87□□□□□ -0.83
NEK3-211ENST00000629912 SUPT5HO00267 1087 aaKnown RBP9.76□□□□□ -0.85
NEK3-211ENST00000629912 RB1CC1Q8TDY2 1594 aa9.73□□□□□ -0.85
NEK3-211ENST00000629912 AEBP2Q6ZN18 517 aaPredicted RBP9.73□□□□□ -0.85
NEK3-211ENST00000629912 SCRIBQ14160 1630 aa9.72□□□□□ -0.85
NEK3-211ENST00000629912 RSF1Q96T23 1441 aaPredicted RBP9.56□□□□□ -0.88
NEK3-211ENST00000629912 UNC13AQ9UPW8 1703 aa9.54□□□□□ -0.88
NEK3-211ENST00000629912 CECR2Q9BXF3 1484 aa9.49□□□□□ -0.89
NEK3-211ENST00000629912 CHIC1Q5VXU3 224 aa9.48□□□□□ -0.89
NEK3-211ENST00000629912 MROH2BQ7Z745 1585 aa9.46□□□□□ -0.9
NEK3-211ENST00000629912 BAZ1AQ9NRL2 1556 aaPredicted RBP9.45□□□□□ -0.9
NEK3-211ENST00000629912 BICRAQ9NZM4 1560 aa9.44□□□□□ -0.9
NEK3-211ENST00000629912 WIZO95785 1651 aa9.39□□□□□ -0.91
NEK3-211ENST00000629912 SMARCA4P51532 1647 aa9.37□□□□□ -0.91
NEK3-211ENST00000629912 PABPN1Q86U42 306 aaKnown RBP eCLIP9.36□□□□□ -0.91
NEK3-211ENST00000629912 TOP2AP11388 1531 aaKnown RBP9.3□□□□□ -0.92
NEK3-211ENST00000629912 PEG3Q9GZU2 1588 aa9.29□□□□□ -0.92
NEK3-211ENST00000629912 CCDC88BA6NC98 1476 aa9.22□□□□□ -0.93
NEK3-211ENST00000629912 SMARCA2P51531 1590 aa9.21□□□□□ -0.93
NEK3-211ENST00000629912 ATAD2BQ9ULI0 1458 aa9.21□□□□□ -0.94
NEK3-211ENST00000629912 TRIM41Q8WV44 630 aa9.2□□□□□ -0.94
NEK3-211ENST00000629912 EIF4G1Q04637 1599 aaKnown RBP9.18□□□□□ -0.94
NEK3-211ENST00000629912 NCAPD3P42695 1498 aa9.13□□□□□ -0.95
NEK3-211ENST00000629912 BAZ1BQ9UIG0 1483 aaKnown RBP9.13□□□□□ -0.95
NEK3-211ENST00000629912 LOC105371045A0A1W2PR82 267 aa9.1□□□□□ -0.95
NEK3-211ENST00000629912 HMGXB3Q12766 1538 aa9.09□□□□□ -0.95
NEK3-211ENST00000629912 ABCC8Q09428 1581 aa9.02□□□□□ -0.97
NEK3-211ENST00000629912 FAM9AQ8IZU1 332 aaPredicted RBP8.99□□□□□ -0.97
NEK3-211ENST00000629912 WRNQ14191 1432 aaPredicted RBP eCLIP8.98□□□□□ -0.97
NEK3-211ENST00000629912 EEA1Q15075 1411 aa8.97□□□□□ -0.97
NEK3-211ENST00000629912 CC2D2AQ9P2K1 1620 aa8.95□□□□□ -0.98
NEK3-211ENST00000629912 CFTRP13569 1480 aa8.94□□□□□ -0.98
NEK3-211ENST00000629912 SYNJ1O43426 1573 aa8.92□□□□□ -0.98
NEK3-211ENST00000629912 CSRNP3Q8WYN3 585 aa8.92□□□□□ -0.98
NEK3-211ENST00000629912 SOGA1O94964 1423 aa8.91□□□□□ -0.98
NEK3-211ENST00000629912 PRDM2Q13029 1718 aa8.9□□□□□ -0.98
NEK3-211ENST00000629912 TOP2BQ02880 1626 aa8.9□□□□□ -0.99
NEK3-211ENST00000629912 CADPSQ9ULU8 1353 aa8.89□□□□□ -0.99
NEK3-211ENST00000629912 BIVM-ERCC5R4GMW8 1640 aa8.89□□□□□ -0.99
NEK3-211ENST00000629912 RUSC2Q8N2Y8 1516 aa8.87□□□□□ -0.99
NEK3-211ENST00000629912 TNIKQ9UKE5 1360 aa8.86□□□□□ -0.99
NEK3-211ENST00000629912 TRIM26Q12899 539 aaPredicted RBP8.83□□□□□ -1
NEK3-211ENST00000629912 CUX1P39880 1505 aa8.83□□□□□ -1
NEK3-211ENST00000629912 KIF21BO75037 1637 aa8.82□□□□□ -1
NEK3-211ENST00000629912 PCGF6Q9BYE7 350 aa8.81□□□□□ -1
NEK3-211ENST00000629912 GOLGA3Q08378 1498 aa8.81□□□□□ -1
NEK3-211ENST00000629912 CEP164Q9UPV0 1460 aa8.81□□□□□ -1
NEK3-211ENST00000629912 EHMT2Q96KQ7 1210 aa8.8□□□□□ -1
NEK3-211ENST00000629912 UBTFP17480 764 aaKnown RBP8.78□□□□□ -1
NEK3-211ENST00000629912 LAMC3Q9Y6N6 1575 aa8.77□□□□□ -1.01
NEK3-211ENST00000629912 CEP162Q5TB80 1403 aa8.76□□□□□ -1.01
NEK3-211ENST00000629912 KIF27Q86VH2 1401 aa8.76□□□□□ -1.01
NEK3-211ENST00000629912 FANCD2Q9BXW9 1451 aa8.76□□□□□ -1.01
NEK3-211ENST00000629912 PRXQ9BXM0 1461 aa8.75□□□□□ -1.01
NEK3-211ENST00000629912 ERICH3Q5RHP9 1530 aa8.74□□□□□ -1.01
NEK3-211ENST00000629912 RAPGEF2Q9Y4G8 1499 aa8.71□□□□□ -1.01
NEK3-211ENST00000629912 DNMBPQ6XZF7 1577 aa8.71□□□□□ -1.02
NEK3-211ENST00000629912 HRCP23327 699 aa8.71□□□□□ -1.02
NEK3-211ENST00000629912 NESP48681 1621 aa8.71□□□□□ -1.02
NEK3-211ENST00000629912 PDS5BQ9NTI5 1447 aa8.71□□□□□ -1.02
NEK3-211ENST00000629912 FGD5Q6ZNL6 1462 aa8.7□□□□□ -1.02
NEK3-211ENST00000629912 IGF1RP08069 1367 aa8.7□□□□□ -1.02
NEK3-211ENST00000629912 DNAJC5BQ9UF47 199 aa8.69□□□□□ -1.02
NEK3-211ENST00000629912 TOPBP1Q92547 1522 aa8.69□□□□□ -1.02
NEK3-211ENST00000629912 CUX2O14529 1486 aa8.67□□□□□ -1.02
NEK3-211ENST00000629912 CLIP1P30622 1438 aa8.67□□□□□ -1.02
NEK3-211ENST00000629912 ABCA10Q8WWZ4 1543 aa8.65□□□□□ -1.02
NEK3-211ENST00000629912 URB2Q14146 1524 aaKnown RBP8.64□□□□□ -1.03
NEK3-211ENST00000629912 POLA1P09884 1462 aaPredicted RBP8.64□□□□□ -1.03
NEK3-211ENST00000629912 CARMIL1Q5VZK9 1371 aa8.63□□□□□ -1.03
NEK3-211ENST00000629912 VPS8Q8N3P4 1428 aa8.63□□□□□ -1.03
NEK3-211ENST00000629912 RAD54L2Q9Y4B4 1467 aa8.62□□□□□ -1.03
NEK3-211ENST00000629912 KIF21AQ7Z4S6 1674 aa8.61□□□□□ -1.03
NEK3-211ENST00000629912 PPARGC1BQ86YN6 1023 aaKnown RBP8.6□□□□□ -1.03
NEK3-211ENST00000629912 WDR97A6NE52 1622 aa8.59□□□□□ -1.03
NEK3-211ENST00000629912 ZEB1P37275 1124 aaPredicted RBP8.58□□□□□ -1.04
NEK3-211ENST00000629912 CUL7Q14999 1698 aa8.57□□□□□ -1.04
NEK3-211ENST00000629912 ARAP1Q96P48 1450 aa8.57□□□□□ -1.04
NEK3-211ENST00000629912 APLP2Q06481 763 aa8.56□□□□□ -1.04
NEK3-211ENST00000629912 MRC2Q9UBG0 1479 aa8.56□□□□□ -1.04
NEK3-211ENST00000629912 TARBP1Q13395 1621 aaKnown RBP8.55□□□□□ -1.04
NEK3-211ENST00000629912 ABCA5Q8WWZ7 1642 aa8.55□□□□□ -1.04
NEK3-211ENST00000629912 ARHGAP35Q9NRY4 1499 aa8.55□□□□□ -1.04
NEK3-211ENST00000629912 GAPVD1Q14C86 1478 aa8.54□□□□□ -1.04
NEK3-211ENST00000629912 TDRD9Q8NDG6 1382 aaKnown RBP8.53□□□□□ -1.04
NEK3-211ENST00000629912 RANGAP1P46060 587 aaPredicted RBP8.52□□□□□ -1.05
NEK3-211ENST00000629912 WDR62O43379 1518 aa8.5□□□□□ -1.05
NEK3-211ENST00000629912 MAP3K1Q13233 1512 aa8.5□□□□□ -1.05
NEK3-211ENST00000629912 IFT140Q96RY7 1462 aa8.49□□□□□ -1.05
NEK3-211ENST00000629912 CTTNBP2Q8WZ74 1663 aa8.49□□□□□ -1.05
NEK3-211ENST00000629912 EFCAB5A4FU69 1503 aa8.48□□□□□ -1.05
NEK3-211ENST00000629912 PBRM1Q86U86 1689 aa8.46□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms