RNA–Protein interactions for RNA: ENST00000628906.2

LINC00649-220, long intergenic non-protein coding RNA 649, humanhuman

TSL 5

Gene LINC00649, Length 625 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00649-220ENST00000628906 NISCHQ9Y2I1 1504 aa16.24■□□□□ 0.19
LINC00649-220ENST00000628906 DNAJC5BQ9UF47 199 aa15.96■□□□□ 0.15
LINC00649-220ENST00000628906 ABCC9O60706 1549 aa15.92■□□□□ 0.14
LINC00649-220ENST00000628906 DNAJC5Q9H3Z4 198 aa15.4■□□□□ 0.06
LINC00649-220ENST00000628906 CCDC180Q9P1Z9 1646 aa14.93□□□□□ -0.02
LINC00649-220ENST00000628906 PABPN1Q86U42 306 aaKnown RBP eCLIP14.72□□□□□ -0.05
LINC00649-220ENST00000628906 RB1CC1Q8TDY2 1594 aa14.72□□□□□ -0.05
LINC00649-220ENST00000628906 AEBP2Q6ZN18 517 aaPredicted RBP14.56□□□□□ -0.08
LINC00649-220ENST00000628906 CECR2Q9BXF3 1484 aa14.48□□□□□ -0.09
LINC00649-220ENST00000628906 NACADO15069 1562 aa14.41□□□□□ -0.1
LINC00649-220ENST00000628906 BICRAQ9NZM4 1560 aa14.36□□□□□ -0.11
LINC00649-220ENST00000628906 CC2D2AQ9P2K1 1620 aa14.33□□□□□ -0.12
LINC00649-220ENST00000628906 UNC13AQ9UPW8 1703 aa14.32□□□□□ -0.12
LINC00649-220ENST00000628906 TRIM41Q8WV44 630 aa14.18□□□□□ -0.14
LINC00649-220ENST00000628906 CUX2O14529 1486 aa14.17□□□□□ -0.14
LINC00649-220ENST00000628906 DCAF8L2P0C7V8 631 aa14.14□□□□□ -0.15
LINC00649-220ENST00000628906 CHIC1Q5VXU3 224 aa14.13□□□□□ -0.15
LINC00649-220ENST00000628906 SHROOM4Q9ULL8 1493 aa14.08□□□□□ -0.16
LINC00649-220ENST00000628906 EIF4G1Q04637 1599 aaKnown RBP14.06□□□□□ -0.16
LINC00649-220ENST00000628906 MYO15BQ96JP2 1530 aa13.95□□□□□ -0.18
LINC00649-220ENST00000628906 ERCC6Q03468 1493 aa13.8□□□□□ -0.2
LINC00649-220ENST00000628906 SCRIBQ14160 1630 aa13.58□□□□□ -0.24
LINC00649-220ENST00000628906 OSCARQ8IYS5 282 aa13.44□□□□□ -0.26
LINC00649-220ENST00000628906 THOC2Q8NI27 1593 aaKnown RBP13.43□□□□□ -0.26
LINC00649-220ENST00000628906 NESP48681 1621 aa13.41□□□□□ -0.26
LINC00649-220ENST00000628906 DCAF1Q9Y4B6 1507 aa13.39□□□□□ -0.27
LINC00649-220ENST00000628906 NCAPD3P42695 1498 aa13.38□□□□□ -0.27
LINC00649-220ENST00000628906 ILDR1Q86SU0 546 aaPredicted RBP13.35□□□□□ -0.27
LINC00649-220ENST00000628906 TRHP20396 242 aaPredicted RBP13.28□□□□□ -0.28
LINC00649-220ENST00000628906 BAZ1AQ9NRL2 1556 aaPredicted RBP13.25□□□□□ -0.29
LINC00649-220ENST00000628906 RIMBP3CA6NJZ7 1639 aa13.24□□□□□ -0.29
LINC00649-220ENST00000628906 RIMBP3BA6NNM3 1639 aa13.24□□□□□ -0.29
LINC00649-220ENST00000628906 RIMBP3Q9UFD9 1639 aa13.24□□□□□ -0.29
LINC00649-220ENST00000628906 ZCCHC6Q5VYS8 1495 aaKnown RBP13.22□□□□□ -0.29
LINC00649-220ENST00000628906 SMARCA2P51531 1590 aa13.21□□□□□ -0.29
LINC00649-220ENST00000628906 PDS5BQ9NTI5 1447 aa13.16□□□□□ -0.3
LINC00649-220ENST00000628906 ATAD2BQ9ULI0 1458 aa13.16□□□□□ -0.3
LINC00649-220ENST00000628906 LAMC3Q9Y6N6 1575 aa13.15□□□□□ -0.3
LINC00649-220ENST00000628906 CYB5RLQ6IPT4 315 aa13.15□□□□□ -0.3
LINC00649-220ENST00000628906 KIF21AQ7Z4S6 1674 aa13.12□□□□□ -0.31
LINC00649-220ENST00000628906 ARHGEF11O15085 1522 aa13.12□□□□□ -0.31
LINC00649-220ENST00000628906 HMGXB3Q12766 1538 aa13.11□□□□□ -0.31
LINC00649-220ENST00000628906 MRC2Q9UBG0 1479 aa13.05□□□□□ -0.32
LINC00649-220ENST00000628906 WDR62O43379 1518 aa13.05□□□□□ -0.32
LINC00649-220ENST00000628906 ARAP1Q96P48 1450 aa12.93□□□□□ -0.34
LINC00649-220ENST00000628906 BAZ1BQ9UIG0 1483 aaKnown RBP12.92□□□□□ -0.34
LINC00649-220ENST00000628906 CADPSQ9ULU8 1353 aa12.92□□□□□ -0.34
LINC00649-220ENST00000628906 SMARCA4P51532 1647 aa12.83□□□□□ -0.36
LINC00649-220ENST00000628906 CEP164Q9UPV0 1460 aa12.79□□□□□ -0.36
LINC00649-220ENST00000628906 RSF1Q96T23 1441 aaPredicted RBP12.77□□□□□ -0.37
LINC00649-220ENST00000628906 PEG3Q9GZU2 1588 aa12.77□□□□□ -0.37
LINC00649-220ENST00000628906 FANCD2Q9BXW9 1451 aa12.71□□□□□ -0.38
LINC00649-220ENST00000628906 KDM4FA0A1W2PPD8 638 aa12.69□□□□□ -0.38
LINC00649-220ENST00000628906 URB2Q14146 1524 aaKnown RBP12.67□□□□□ -0.38
LINC00649-220ENST00000628906 ZNF608Q9ULD9 1512 aaPredicted RBP12.67□□□□□ -0.38
LINC00649-220ENST00000628906 IFT140Q96RY7 1462 aa12.61□□□□□ -0.39
LINC00649-220ENST00000628906 FBXO41Q8TF61 875 aa12.6□□□□□ -0.39
LINC00649-220ENST00000628906 FBLN2P98095 1184 aa12.56□□□□□ -0.4
LINC00649-220ENST00000628906 CHD1O14646 1710 aa12.56□□□□□ -0.4
LINC00649-220ENST00000628906 CFTRP13569 1480 aa12.55□□□□□ -0.4
LINC00649-220ENST00000628906 LMTK3Q96Q04 1460 aa12.54□□□□□ -0.4
LINC00649-220ENST00000628906 SOCS7O14512 581 aa12.53□□□□□ -0.4
LINC00649-220ENST00000628906 EIF4G3O43432 1585 aaKnown RBP12.48□□□□□ -0.41
LINC00649-220ENST00000628906 ERCC6L2Q5T890 1561 aa12.48□□□□□ -0.41
LINC00649-220ENST00000628906 MROH2BQ7Z745 1585 aa12.48□□□□□ -0.41
LINC00649-220ENST00000628906 PHF23Q9BUL5 403 aaPredicted RBP12.48□□□□□ -0.41
LINC00649-220ENST00000628906 CLASP1Q7Z460 1538 aa12.47□□□□□ -0.41
LINC00649-220ENST00000628906 AQRO60306 1485 aaKnown RBP eCLIP12.46□□□□□ -0.41
LINC00649-220ENST00000628906 GAPVD1Q14C86 1478 aa12.44□□□□□ -0.42
LINC00649-220ENST00000628906 ILDR2Q71H61 639 aa12.4□□□□□ -0.42
LINC00649-220ENST00000628906 HECW2Q9P2P5 1572 aa12.38□□□□□ -0.43
LINC00649-220ENST00000628906 KIF13AQ9H1H9 1805 aa12.36□□□□□ -0.43
LINC00649-220ENST00000628906 TOPBP1Q92547 1522 aa12.36□□□□□ -0.43
LINC00649-220ENST00000628906 CHMP7Q8WUX9 453 aaPredicted RBP12.35□□□□□ -0.43
LINC00649-220ENST00000628906 SYNJ1O43426 1573 aa12.35□□□□□ -0.43
LINC00649-220ENST00000628906 TARBP1Q13395 1621 aaKnown RBP12.32□□□□□ -0.44
LINC00649-220ENST00000628906 ABCC8Q09428 1581 aa12.3□□□□□ -0.44
LINC00649-220ENST00000628906 SYNJ2O15056 1496 aa12.29□□□□□ -0.44
LINC00649-220ENST00000628906 FAM69CQ0P6D2 419 aa12.29□□□□□ -0.44
LINC00649-220ENST00000628906 SENP3Q9H4L4 574 aaPredicted RBP12.25□□□□□ -0.45
LINC00649-220ENST00000628906 ADGRL1O94910 1474 aa12.25□□□□□ -0.45
LINC00649-220ENST00000628906 SNAPC4Q5SXM2 1469 aa12.25□□□□□ -0.45
LINC00649-220ENST00000628906 KDM6BO15054 1643 aa12.24□□□□□ -0.45
LINC00649-220ENST00000628906 WIZO95785 1651 aa12.24□□□□□ -0.45
LINC00649-220ENST00000628906 ABCC10Q5T3U5 1492 aa12.24□□□□□ -0.45
LINC00649-220ENST00000628906 TDRD9Q8NDG6 1382 aaKnown RBP12.24□□□□□ -0.45
LINC00649-220ENST00000628906 DISP3Q9P2K9 1392 aa12.22□□□□□ -0.45
LINC00649-220ENST00000628906 MAGI1Q96QZ7 1491 aaPredicted RBP12.21□□□□□ -0.45
LINC00649-220ENST00000628906 DNMBPQ6XZF7 1577 aa12.19□□□□□ -0.46
LINC00649-220ENST00000628906 PRDM2Q13029 1718 aa12.17□□□□□ -0.46
LINC00649-220ENST00000628906 POLA1P09884 1462 aaPredicted RBP12.17□□□□□ -0.46
LINC00649-220ENST00000628906 RAD54L2Q9Y4B4 1467 aa12.14□□□□□ -0.47
LINC00649-220ENST00000628906 SOGA1O94964 1423 aa12.13□□□□□ -0.47
LINC00649-220ENST00000628906 GRIN2BQ13224 1484 aa12.12□□□□□ -0.47
LINC00649-220ENST00000628906 WDR97A6NE52 1622 aa12.11□□□□□ -0.47
LINC00649-220ENST00000628906 DIP2BQ9P265 1576 aa12.1□□□□□ -0.47
LINC00649-220ENST00000628906 MAPKBP1O60336 1514 aa12.08□□□□□ -0.48
LINC00649-220ENST00000628906 NPM1P06748 294 aaKnown RBP eCLIP12.08□□□□□ -0.48
LINC00649-220ENST00000628906 CEP170Q5SW79 1584 aa12.07□□□□□ -0.48
LINC00649-220ENST00000628906 TOP2AP11388 1531 aaKnown RBP12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms