RNA–Protein interactions for RNA: ENST00000627960.1

UBR1-212, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 5 BASIC

Gene UBR1, Length 189 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-212ENST00000627960 NISCHQ9Y2I1 1504 aa30.05■■■□□ 2.4
UBR1-212ENST00000627960 CCDC180Q9P1Z9 1646 aa26.89■■□□□ 1.9
UBR1-212ENST00000627960 ABCC9O60706 1549 aa26.65■■□□□ 1.86
UBR1-212ENST00000627960 RB1CC1Q8TDY2 1594 aa25.48■■□□□ 1.67
UBR1-212ENST00000627960 NACADO15069 1562 aa25.36■■□□□ 1.65
UBR1-212ENST00000627960 DCAF8L2P0C7V8 631 aa25.26■■□□□ 1.63
UBR1-212ENST00000627960 MYO15BQ96JP2 1530 aa25.08■■□□□ 1.61
UBR1-212ENST00000627960 UNC13AQ9UPW8 1703 aa24.95■■□□□ 1.58
UBR1-212ENST00000627960 ZCCHC6Q5VYS8 1495 aaKnown RBP24.93■■□□□ 1.58
UBR1-212ENST00000627960 PABPN1Q86U42 306 aaKnown RBP eCLIP24.84■■□□□ 1.57
UBR1-212ENST00000627960 DCAF1Q9Y4B6 1507 aa24.84■■□□□ 1.57
UBR1-212ENST00000627960 DNAJC5BQ9UF47 199 aa24.82■■□□□ 1.56
UBR1-212ENST00000627960 BICRAQ9NZM4 1560 aa24.74■■□□□ 1.55
UBR1-212ENST00000627960 SCRIBQ14160 1630 aa24.49■■□□□ 1.51
UBR1-212ENST00000627960 SHROOM4Q9ULL8 1493 aa24.41■■□□□ 1.5
UBR1-212ENST00000627960 EIF4G1Q04637 1599 aaKnown RBP24.1■■□□□ 1.45
UBR1-212ENST00000627960 CC2D2AQ9P2K1 1620 aa24.1■■□□□ 1.45
UBR1-212ENST00000627960 CECR2Q9BXF3 1484 aa23.98■■□□□ 1.43
UBR1-212ENST00000627960 NCAPD3P42695 1498 aa23.4■■□□□ 1.34
UBR1-212ENST00000627960 SMARCA4P51532 1647 aa23.4■■□□□ 1.34
UBR1-212ENST00000627960 ATAD2BQ9ULI0 1458 aa23.36■■□□□ 1.33
UBR1-212ENST00000627960 SMARCA2P51531 1590 aa23.31■■□□□ 1.32
UBR1-212ENST00000627960 BAZ1AQ9NRL2 1556 aaPredicted RBP23.31■■□□□ 1.32
UBR1-212ENST00000627960 HMGXB3Q12766 1538 aa23.24■■□□□ 1.31
UBR1-212ENST00000627960 PEG3Q9GZU2 1588 aa23.17■■□□□ 1.3
UBR1-212ENST00000627960 MROH2BQ7Z745 1585 aa23.15■■□□□ 1.3
UBR1-212ENST00000627960 BAZ1BQ9UIG0 1483 aaKnown RBP23.13■■□□□ 1.29
UBR1-212ENST00000627960 ERCC6Q03468 1493 aa22.98■■□□□ 1.27
UBR1-212ENST00000627960 NESP48681 1621 aa22.96■■□□□ 1.27
UBR1-212ENST00000627960 WIZO95785 1651 aa22.9■■□□□ 1.26
UBR1-212ENST00000627960 CUX2O14529 1486 aa22.88■■□□□ 1.25
UBR1-212ENST00000627960 LAMC3Q9Y6N6 1575 aa22.84■■□□□ 1.25
UBR1-212ENST00000627960 RSF1Q96T23 1441 aaPredicted RBP22.75■■□□□ 1.23
UBR1-212ENST00000627960 CADPSQ9ULU8 1353 aa22.7■■□□□ 1.22
UBR1-212ENST00000627960 PDS5BQ9NTI5 1447 aa22.7■■□□□ 1.22
UBR1-212ENST00000627960 KIF21AQ7Z4S6 1674 aa22.69■■□□□ 1.22
UBR1-212ENST00000627960 THOC2Q8NI27 1593 aaKnown RBP22.68■■□□□ 1.22
UBR1-212ENST00000627960 DNAJC5Q9H3Z4 198 aa22.64■■□□□ 1.21
UBR1-212ENST00000627960 TOP2AP11388 1531 aaKnown RBP22.61■■□□□ 1.21
UBR1-212ENST00000627960 CFTRP13569 1480 aa22.48■■□□□ 1.19
UBR1-212ENST00000627960 MRC2Q9UBG0 1479 aa22.48■■□□□ 1.19
UBR1-212ENST00000627960 FANCD2Q9BXW9 1451 aa22.43■■□□□ 1.18
UBR1-212ENST00000627960 CEP164Q9UPV0 1460 aa22.43■■□□□ 1.18
UBR1-212ENST00000627960 WDR62O43379 1518 aa22.42■■□□□ 1.18
UBR1-212ENST00000627960 CCDC88BA6NC98 1476 aa22.36■■□□□ 1.17
UBR1-212ENST00000627960 PRDM2Q13029 1718 aa22.32■■□□□ 1.16
UBR1-212ENST00000627960 URB2Q14146 1524 aaKnown RBP22.24■■□□□ 1.15
UBR1-212ENST00000627960 TOPBP1Q92547 1522 aa22.04■■□□□ 1.12
UBR1-212ENST00000627960 ABCC8Q09428 1581 aa22.03■■□□□ 1.12
UBR1-212ENST00000627960 IFT140Q96RY7 1462 aa21.99■■□□□ 1.11
UBR1-212ENST00000627960 DNMBPQ6XZF7 1577 aa21.99■■□□□ 1.11
UBR1-212ENST00000627960 ZNF608Q9ULD9 1512 aaPredicted RBP21.93■■□□□ 1.1
UBR1-212ENST00000627960 SUPT5HO00267 1087 aaKnown RBP21.9■■□□□ 1.1
UBR1-212ENST00000627960 OSCARQ8IYS5 282 aa21.89■■□□□ 1.09
UBR1-212ENST00000627960 TARBP1Q13395 1621 aaKnown RBP21.84■■□□□ 1.09
UBR1-212ENST00000627960 POLA1P09884 1462 aaPredicted RBP21.82■■□□□ 1.08
UBR1-212ENST00000627960 EIF4G3O43432 1585 aaKnown RBP21.82■■□□□ 1.08
UBR1-212ENST00000627960 AQRO60306 1485 aaKnown RBP eCLIP21.76■■□□□ 1.07
UBR1-212ENST00000627960 RAD54L2Q9Y4B4 1467 aa21.74■■□□□ 1.07
UBR1-212ENST00000627960 CUX1P39880 1505 aa21.74■■□□□ 1.07
UBR1-212ENST00000627960 SOGA1O94964 1423 aa21.73■■□□□ 1.07
UBR1-212ENST00000627960 FGD5Q6ZNL6 1462 aa21.71■■□□□ 1.07
UBR1-212ENST00000627960 TRIM41Q8WV44 630 aa21.71■■□□□ 1.07
UBR1-212ENST00000627960 TDRD9Q8NDG6 1382 aaKnown RBP21.66■■□□□ 1.06
UBR1-212ENST00000627960 CHD1O14646 1710 aa21.64■■□□□ 1.06
UBR1-212ENST00000627960 WDR97A6NE52 1622 aa21.63■■□□□ 1.05
UBR1-212ENST00000627960 RIMBP3CA6NJZ7 1639 aa21.58■■□□□ 1.04
UBR1-212ENST00000627960 RIMBP3BA6NNM3 1639 aa21.58■■□□□ 1.04
UBR1-212ENST00000627960 RIMBP3Q9UFD9 1639 aa21.58■■□□□ 1.04
UBR1-212ENST00000627960 FBLN2P98095 1184 aa21.57■■□□□ 1.04
UBR1-212ENST00000627960 SNAPC4Q5SXM2 1469 aa21.53■■□□□ 1.04
UBR1-212ENST00000627960 GRIN2BQ13224 1484 aa21.52■■□□□ 1.03
UBR1-212ENST00000627960 ARHGEF11O15085 1522 aa21.51■■□□□ 1.03
UBR1-212ENST00000627960 MAGI1Q96QZ7 1491 aaPredicted RBP21.49■■□□□ 1.03
UBR1-212ENST00000627960 ABCA10Q8WWZ4 1543 aa21.49■■□□□ 1.03
UBR1-212ENST00000627960 PBRM1Q86U86 1689 aa21.47■■□□□ 1.03
UBR1-212ENST00000627960 GAPVD1Q14C86 1478 aa21.47■■□□□ 1.03
UBR1-212ENST00000627960 BIVM-ERCC5R4GMW8 1640 aa21.47■■□□□ 1.03
UBR1-212ENST00000627960 TOP2BQ02880 1626 aa21.46■■□□□ 1.03
UBR1-212ENST00000627960 CHMP7Q8WUX9 453 aaPredicted RBP21.45■■□□□ 1.02
UBR1-212ENST00000627960 WRNQ14191 1432 aaPredicted RBP eCLIP21.45■■□□□ 1.02
UBR1-212ENST00000627960 ABCA5Q8WWZ7 1642 aa21.44■■□□□ 1.02
UBR1-212ENST00000627960 SYNJ1O43426 1573 aa21.43■■□□□ 1.02
UBR1-212ENST00000627960 SYNJ2O15056 1496 aa21.42■■□□□ 1.02
UBR1-212ENST00000627960 CLASP1Q7Z460 1538 aa21.38■■□□□ 1.01
UBR1-212ENST00000627960 CYB5RLQ6IPT4 315 aa21.35■■□□□ 1.01
UBR1-212ENST00000627960 ARAP1Q96P48 1450 aa21.32■■□□□ 1
UBR1-212ENST00000627960 ADAMTS12P58397 1594 aa21.26■□□□□ 0.99
UBR1-212ENST00000627960 GRIN2AQ12879 1464 aa21.24■□□□□ 0.99
UBR1-212ENST00000627960 ERICH3Q5RHP9 1530 aa21.23■□□□□ 0.99
UBR1-212ENST00000627960 FHAD1B1AJZ9 1412 aa21.21■□□□□ 0.99
UBR1-212ENST00000627960 NUP160Q12769 1436 aa21.16■□□□□ 0.98
UBR1-212ENST00000627960 CEP170Q5SW79 1584 aa21.15■□□□□ 0.98
UBR1-212ENST00000627960 SHROOM2Q13796 1616 aa21.06■□□□□ 0.96
UBR1-212ENST00000627960 ERCC6L2Q5T890 1561 aa21.06■□□□□ 0.96
UBR1-212ENST00000627960 KIF27Q86VH2 1401 aa21.04■□□□□ 0.96
UBR1-212ENST00000627960 TRHP20396 242 aaPredicted RBP21.03■□□□□ 0.96
UBR1-212ENST00000627960 IGF1RP08069 1367 aa21.01■□□□□ 0.95
UBR1-212ENST00000627960 CUL7Q14999 1698 aa20.96■□□□□ 0.95
UBR1-212ENST00000627960 JPH4Q96JJ6 628 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms