RNA–Protein interactions for RNA: ENST00000627200.1

CHD2-210, Transcript of chromodomain helicase DNA binding protein 2, humanhuman

TSL 3

Gene CHD2, Length 230 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD2-210ENST00000627200 NISCHQ9Y2I1 1504 aa23.59■■□□□ 1.37
CHD2-210ENST00000627200 CCDC180Q9P1Z9 1646 aa21.13■□□□□ 0.97
CHD2-210ENST00000627200 ABCC9O60706 1549 aa21.09■□□□□ 0.97
CHD2-210ENST00000627200 RB1CC1Q8TDY2 1594 aa20.05■□□□□ 0.8
CHD2-210ENST00000627200 NACADO15069 1562 aa19.92■□□□□ 0.78
CHD2-210ENST00000627200 DCAF8L2P0C7V8 631 aa19.85■□□□□ 0.77
CHD2-210ENST00000627200 DNAJC5BQ9UF47 199 aa19.68■□□□□ 0.74
CHD2-210ENST00000627200 UNC13AQ9UPW8 1703 aa19.68■□□□□ 0.74
CHD2-210ENST00000627200 MYO15BQ96JP2 1530 aa19.66■□□□□ 0.74
CHD2-210ENST00000627200 PABPN1Q86U42 306 aaKnown RBP eCLIP19.63■□□□□ 0.73
CHD2-210ENST00000627200 ZCCHC6Q5VYS8 1495 aaKnown RBP19.6■□□□□ 0.73
CHD2-210ENST00000627200 BICRAQ9NZM4 1560 aa19.53■□□□□ 0.72
CHD2-210ENST00000627200 DCAF1Q9Y4B6 1507 aa19.45■□□□□ 0.7
CHD2-210ENST00000627200 SCRIBQ14160 1630 aa19.33■□□□□ 0.69
CHD2-210ENST00000627200 SHROOM4Q9ULL8 1493 aa19.17■□□□□ 0.66
CHD2-210ENST00000627200 CC2D2AQ9P2K1 1620 aa19.04■□□□□ 0.64
CHD2-210ENST00000627200 EIF4G1Q04637 1599 aaKnown RBP19.02■□□□□ 0.63
CHD2-210ENST00000627200 CECR2Q9BXF3 1484 aa18.96■□□□□ 0.63
CHD2-210ENST00000627200 SMARCA4P51532 1647 aa18.41■□□□□ 0.54
CHD2-210ENST00000627200 NCAPD3P42695 1498 aa18.39■□□□□ 0.53
CHD2-210ENST00000627200 ATAD2BQ9ULI0 1458 aa18.38■□□□□ 0.53
CHD2-210ENST00000627200 SMARCA2P51531 1590 aa18.3■□□□□ 0.52
CHD2-210ENST00000627200 BAZ1AQ9NRL2 1556 aaPredicted RBP18.3■□□□□ 0.52
CHD2-210ENST00000627200 HMGXB3Q12766 1538 aa18.28■□□□□ 0.52
CHD2-210ENST00000627200 MROH2BQ7Z745 1585 aa18.21■□□□□ 0.51
CHD2-210ENST00000627200 BAZ1BQ9UIG0 1483 aaKnown RBP18.2■□□□□ 0.5
CHD2-210ENST00000627200 PEG3Q9GZU2 1588 aa18.2■□□□□ 0.5
CHD2-210ENST00000627200 ERCC6Q03468 1493 aa18.16■□□□□ 0.5
CHD2-210ENST00000627200 NESP48681 1621 aa18.16■□□□□ 0.5
CHD2-210ENST00000627200 CUX2O14529 1486 aa18.07■□□□□ 0.48
CHD2-210ENST00000627200 WIZO95785 1651 aa18.02■□□□□ 0.47
CHD2-210ENST00000627200 LAMC3Q9Y6N6 1575 aa17.97■□□□□ 0.47
CHD2-210ENST00000627200 THOC2Q8NI27 1593 aaKnown RBP17.96■□□□□ 0.46
CHD2-210ENST00000627200 DNAJC5Q9H3Z4 198 aa17.93■□□□□ 0.46
CHD2-210ENST00000627200 KIF21AQ7Z4S6 1674 aa17.93■□□□□ 0.46
CHD2-210ENST00000627200 RSF1Q96T23 1441 aaPredicted RBP17.84■□□□□ 0.45
CHD2-210ENST00000627200 PDS5BQ9NTI5 1447 aa17.83■□□□□ 0.45
CHD2-210ENST00000627200 CADPSQ9ULU8 1353 aa17.83■□□□□ 0.45
CHD2-210ENST00000627200 TOP2AP11388 1531 aaKnown RBP17.77■□□□□ 0.43
CHD2-210ENST00000627200 MRC2Q9UBG0 1479 aa17.73■□□□□ 0.43
CHD2-210ENST00000627200 WDR62O43379 1518 aa17.7■□□□□ 0.42
CHD2-210ENST00000627200 CEP164Q9UPV0 1460 aa17.68■□□□□ 0.42
CHD2-210ENST00000627200 CFTRP13569 1480 aa17.67■□□□□ 0.42
CHD2-210ENST00000627200 FANCD2Q9BXW9 1451 aa17.67■□□□□ 0.42
CHD2-210ENST00000627200 URB2Q14146 1524 aaKnown RBP17.55■□□□□ 0.4
CHD2-210ENST00000627200 CCDC88BA6NC98 1476 aa17.55■□□□□ 0.4
CHD2-210ENST00000627200 PRDM2Q13029 1718 aa17.53■□□□□ 0.4
CHD2-210ENST00000627200 TOPBP1Q92547 1522 aa17.35■□□□□ 0.37
CHD2-210ENST00000627200 ZNF608Q9ULD9 1512 aaPredicted RBP17.33■□□□□ 0.37
CHD2-210ENST00000627200 IFT140Q96RY7 1462 aa17.3■□□□□ 0.36
CHD2-210ENST00000627200 DNMBPQ6XZF7 1577 aa17.29■□□□□ 0.36
CHD2-210ENST00000627200 EIF4G3O43432 1585 aaKnown RBP17.24■□□□□ 0.35
CHD2-210ENST00000627200 TRIM41Q8WV44 630 aa17.24■□□□□ 0.35
CHD2-210ENST00000627200 ABCC8Q09428 1581 aa17.23■□□□□ 0.35
CHD2-210ENST00000627200 OSCARQ8IYS5 282 aa17.22■□□□□ 0.35
CHD2-210ENST00000627200 TARBP1Q13395 1621 aaKnown RBP17.21■□□□□ 0.35
CHD2-210ENST00000627200 POLA1P09884 1462 aaPredicted RBP17.18■□□□□ 0.34
CHD2-210ENST00000627200 AQRO60306 1485 aaKnown RBP eCLIP17.15■□□□□ 0.342e-6■■□□□ 13.2
CHD2-210ENST00000627200 RAD54L2Q9Y4B4 1467 aa17.14■□□□□ 0.33
CHD2-210ENST00000627200 CUX1P39880 1505 aa17.11■□□□□ 0.33
CHD2-210ENST00000627200 SUPT5HO00267 1087 aaKnown RBP17.11■□□□□ 0.33
CHD2-210ENST00000627200 FGD5Q6ZNL6 1462 aa17.1■□□□□ 0.33
CHD2-210ENST00000627200 CHD1O14646 1710 aa17.1■□□□□ 0.33
CHD2-210ENST00000627200 RIMBP3CA6NJZ7 1639 aa17.09■□□□□ 0.33
CHD2-210ENST00000627200 RIMBP3BA6NNM3 1639 aa17.09■□□□□ 0.33
CHD2-210ENST00000627200 RIMBP3Q9UFD9 1639 aa17.09■□□□□ 0.33
CHD2-210ENST00000627200 SOGA1O94964 1423 aa17.06■□□□□ 0.32
CHD2-210ENST00000627200 TDRD9Q8NDG6 1382 aaKnown RBP17.05■□□□□ 0.32
CHD2-210ENST00000627200 ARHGEF11O15085 1522 aa17.03■□□□□ 0.32
CHD2-210ENST00000627200 WDR97A6NE52 1622 aa16.99■□□□□ 0.31
CHD2-210ENST00000627200 SNAPC4Q5SXM2 1469 aa16.99■□□□□ 0.31
CHD2-210ENST00000627200 FBLN2P98095 1184 aa16.99■□□□□ 0.31
CHD2-210ENST00000627200 GRIN2BQ13224 1484 aa16.92■□□□□ 0.3
CHD2-210ENST00000627200 PBRM1Q86U86 1689 aa16.91■□□□□ 0.3
CHD2-210ENST00000627200 MAGI1Q96QZ7 1491 aaPredicted RBP16.91■□□□□ 0.3
CHD2-210ENST00000627200 ABCA5Q8WWZ7 1642 aa16.89■□□□□ 0.29
CHD2-210ENST00000627200 ARAP1Q96P48 1450 aa16.88■□□□□ 0.29
CHD2-210ENST00000627200 CLASP1Q7Z460 1538 aa16.88■□□□□ 0.29
CHD2-210ENST00000627200 ABCA10Q8WWZ4 1543 aa16.88■□□□□ 0.29
CHD2-210ENST00000627200 GAPVD1Q14C86 1478 aa16.87■□□□□ 0.29
CHD2-210ENST00000627200 SYNJ1O43426 1573 aa16.86■□□□□ 0.29
CHD2-210ENST00000627200 SYNJ2O15056 1496 aa16.86■□□□□ 0.29
CHD2-210ENST00000627200 CYB5RLQ6IPT4 315 aa16.85■□□□□ 0.29
CHD2-210ENST00000627200 BIVM-ERCC5R4GMW8 1640 aa16.85■□□□□ 0.29
CHD2-210ENST00000627200 CHMP7Q8WUX9 453 aaPredicted RBP16.84■□□□□ 0.29
CHD2-210ENST00000627200 TOP2BQ02880 1626 aa16.83■□□□□ 0.28
CHD2-210ENST00000627200 WRNQ14191 1432 aaPredicted RBP eCLIP16.81■□□□□ 0.28
CHD2-210ENST00000627200 ADAMTS12P58397 1594 aa16.77■□□□□ 0.27
CHD2-210ENST00000627200 GRIN2AQ12879 1464 aa16.73■□□□□ 0.27
CHD2-210ENST00000627200 CEP170Q5SW79 1584 aa16.69■□□□□ 0.26
CHD2-210ENST00000627200 ERCC6L2Q5T890 1561 aa16.68■□□□□ 0.26
CHD2-210ENST00000627200 NUP160Q12769 1436 aa16.66■□□□□ 0.26
CHD2-210ENST00000627200 ERICH3Q5RHP9 1530 aa16.65■□□□□ 0.26
CHD2-210ENST00000627200 FHAD1B1AJZ9 1412 aa16.65■□□□□ 0.26
CHD2-210ENST00000627200 TRHP20396 242 aaPredicted RBP16.63■□□□□ 0.25
CHD2-210ENST00000627200 SHROOM2Q13796 1616 aa16.59■□□□□ 0.25
CHD2-210ENST00000627200 RUSC2Q8N2Y8 1516 aa16.53■□□□□ 0.24
CHD2-210ENST00000627200 PRG4Q92954 1404 aaPredicted RBP16.48■□□□□ 0.23
CHD2-210ENST00000627200 KIF27Q86VH2 1401 aa16.47■□□□□ 0.23
CHD2-210ENST00000627200 IGF1RP08069 1367 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms