RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 NISCHQ9Y2I1 1504 aa37.26■■■■□ 3.56
PNKP-218ENST00000625299 ABCC9O60706 1549 aa34.01■■■■□ 3.04
PNKP-218ENST00000625299 CCDC180Q9P1Z9 1646 aa33.6■■■□□ 2.97
PNKP-218ENST00000625299 RB1CC1Q8TDY2 1594 aa32.17■■■□□ 2.74
PNKP-218ENST00000625299 DNAJC5BQ9UF47 199 aa32.15■■■□□ 2.74
PNKP-218ENST00000625299 NACADO15069 1562 aa31.83■■■□□ 2.69
PNKP-218ENST00000625299 DCAF8L2P0C7V8 631 aa31.72■■■□□ 2.67
PNKP-218ENST00000625299 PABPN1Q86U42 306 aaKnown RBP eCLIP31.61■■■□□ 2.65
PNKP-218ENST00000625299 UNC13AQ9UPW8 1703 aa31.48■■■□□ 2.63
PNKP-218ENST00000625299 BICRAQ9NZM4 1560 aa31.22■■■□□ 2.59
PNKP-218ENST00000625299 MYO15BQ96JP2 1530 aa31.2■■■□□ 2.59
PNKP-218ENST00000625299 ZCCHC6Q5VYS8 1495 aaKnown RBP30.81■■■□□ 2.52
PNKP-218ENST00000625299 SHROOM4Q9ULL8 1493 aa30.71■■■□□ 2.51
PNKP-218ENST00000625299 DCAF1Q9Y4B6 1507 aa30.7■■■□□ 2.51
PNKP-218ENST00000625299 SCRIBQ14160 1630 aa30.68■■■□□ 2.5
PNKP-218ENST00000625299 CC2D2AQ9P2K1 1620 aa30.68■■■□□ 2.5
PNKP-218ENST00000625299 CECR2Q9BXF3 1484 aa30.64■■■□□ 2.5
PNKP-218ENST00000625299 EIF4G1Q04637 1599 aaKnown RBP30.52■■■□□ 2.48
PNKP-218ENST00000625299 DNAJC5Q9H3Z4 198 aa29.76■■■□□ 2.35
PNKP-218ENST00000625299 ERCC6Q03468 1493 aa29.41■■■□□ 2.3
PNKP-218ENST00000625299 CUX2O14529 1486 aa29.39■■■□□ 2.3
PNKP-218ENST00000625299 NCAPD3P42695 1498 aa29.36■■■□□ 2.29
PNKP-218ENST00000625299 ATAD2BQ9ULI0 1458 aa29.26■■■□□ 2.27
PNKP-218ENST00000625299 SMARCA4P51532 1647 aa29.17■■■□□ 2.26
PNKP-218ENST00000625299 SMARCA2P51531 1590 aa29.17■■■□□ 2.26
PNKP-218ENST00000625299 HMGXB3Q12766 1538 aa29.15■■■□□ 2.26
PNKP-218ENST00000625299 NESP48681 1621 aa29.1■■■□□ 2.25
PNKP-218ENST00000625299 BAZ1BQ9UIG0 1483 aaKnown RBP29■■■□□ 2.23
PNKP-218ENST00000625299 BAZ1AQ9NRL2 1556 aaPredicted RBP28.96■■■□□ 2.23
PNKP-218ENST00000625299 THOC2Q8NI27 1593 aaKnown RBP28.86■■■□□ 2.21
PNKP-218ENST00000625299 PEG3Q9GZU2 1588 aa28.83■■■□□ 2.21
PNKP-218ENST00000625299 LAMC3Q9Y6N6 1575 aa28.8■■■□□ 2.2
PNKP-218ENST00000625299 KIF21AQ7Z4S6 1674 aa28.74■■■□□ 2.19
PNKP-218ENST00000625299 MROH2BQ7Z745 1585 aa28.74■■■□□ 2.19
PNKP-218ENST00000625299 PDS5BQ9NTI5 1447 aa28.65■■■□□ 2.18
PNKP-218ENST00000625299 CADPSQ9ULU8 1353 aa28.49■■■□□ 2.15
PNKP-218ENST00000625299 MRC2Q9UBG0 1479 aa28.45■■■□□ 2.14
PNKP-218ENST00000625299 TRIM41Q8WV44 630 aa28.44■■■□□ 2.14
PNKP-218ENST00000625299 WIZO95785 1651 aa28.41■■■□□ 2.14
PNKP-218ENST00000625299 WDR62O43379 1518 aa28.37■■■□□ 2.13
PNKP-218ENST00000625299 CEP164Q9UPV0 1460 aa28.27■■■□□ 2.12
PNKP-218ENST00000625299 FANCD2Q9BXW9 1451 aa28.21■■■□□ 2.11
PNKP-218ENST00000625299 CFTRP13569 1480 aa28.08■■■□□ 2.09
PNKP-218ENST00000625299 OSCARQ8IYS5 282 aa28■■■□□ 2.07
PNKP-218ENST00000625299 TOP2AP11388 1531 aaKnown RBP27.99■■■□□ 2.07
PNKP-218ENST00000625299 RSF1Q96T23 1441 aaPredicted RBP27.99■■■□□ 2.07
PNKP-218ENST00000625299 URB2Q14146 1524 aaKnown RBP27.98■■■□□ 2.07
PNKP-218ENST00000625299 PRDM2Q13029 1718 aa27.84■■■□□ 2.05
PNKP-218ENST00000625299 RIMBP3CA6NJZ7 1639 aa27.72■■■□□ 2.03
PNKP-218ENST00000625299 RIMBP3BA6NNM3 1639 aa27.72■■■□□ 2.03
PNKP-218ENST00000625299 RIMBP3Q9UFD9 1639 aa27.72■■■□□ 2.03
PNKP-218ENST00000625299 ZNF608Q9ULD9 1512 aaPredicted RBP27.72■■■□□ 2.03
PNKP-218ENST00000625299 IFT140Q96RY7 1462 aa27.7■■■□□ 2.02
PNKP-218ENST00000625299 CCDC88BA6NC98 1476 aa27.67■■■□□ 2.02
PNKP-218ENST00000625299 TOPBP1Q92547 1522 aa27.62■■■□□ 2.01
PNKP-218ENST00000625299 ARHGEF11O15085 1522 aa27.58■■■□□ 2.01
PNKP-218ENST00000625299 EIF4G3O43432 1585 aaKnown RBP27.56■■■□□ 2
PNKP-218ENST00000625299 ABCC8Q09428 1581 aa27.49■■□□□ 1.99
PNKP-218ENST00000625299 DNMBPQ6XZF7 1577 aa27.49■■□□□ 1.99
PNKP-218ENST00000625299 CHD1O14646 1710 aa27.44■■□□□ 1.98
PNKP-218ENST00000625299 AQRO60306 1485 aaKnown RBP eCLIP27.42■■□□□ 1.988e-7■■■□□ 14.7
PNKP-218ENST00000625299 CYB5RLQ6IPT4 315 aa27.41■■□□□ 1.98
PNKP-218ENST00000625299 TARBP1Q13395 1621 aaKnown RBP27.39■■□□□ 1.98
PNKP-218ENST00000625299 FBLN2P98095 1184 aa27.37■■□□□ 1.97
PNKP-218ENST00000625299 POLA1P09884 1462 aaPredicted RBP27.32■■□□□ 1.96
PNKP-218ENST00000625299 ARAP1Q96P48 1450 aa27.28■■□□□ 1.96
PNKP-218ENST00000625299 TRHP20396 242 aaPredicted RBP27.27■■□□□ 1.96
PNKP-218ENST00000625299 RAD54L2Q9Y4B4 1467 aa27.25■■□□□ 1.95
PNKP-218ENST00000625299 TDRD9Q8NDG6 1382 aaKnown RBP27.2■■□□□ 1.94
PNKP-218ENST00000625299 SOGA1O94964 1423 aa27.18■■□□□ 1.94
PNKP-218ENST00000625299 SNAPC4Q5SXM2 1469 aa27.14■■□□□ 1.94
PNKP-218ENST00000625299 FGD5Q6ZNL6 1462 aa27.12■■□□□ 1.93
PNKP-218ENST00000625299 WDR97A6NE52 1622 aa27.06■■□□□ 1.92
PNKP-218ENST00000625299 CHMP7Q8WUX9 453 aaPredicted RBP27.06■■□□□ 1.92
PNKP-218ENST00000625299 CLASP1Q7Z460 1538 aa27.06■■□□□ 1.92
PNKP-218ENST00000625299 SYNJ1O43426 1573 aa27.04■■□□□ 1.92
PNKP-218ENST00000625299 CUX1P39880 1505 aa27.02■■□□□ 1.92
PNKP-218ENST00000625299 MAGI1Q96QZ7 1491 aaPredicted RBP27.01■■□□□ 1.91
PNKP-218ENST00000625299 GRIN2BQ13224 1484 aa26.99■■□□□ 1.91
PNKP-218ENST00000625299 SYNJ2O15056 1496 aa26.93■■□□□ 1.9
PNKP-218ENST00000625299 PBRM1Q86U86 1689 aa26.92■■□□□ 1.9
PNKP-218ENST00000625299 GAPVD1Q14C86 1478 aa26.85■■□□□ 1.89
PNKP-218ENST00000625299 ABCA5Q8WWZ7 1642 aa26.76■■□□□ 1.87
PNKP-218ENST00000625299 ABCA10Q8WWZ4 1543 aa26.75■■□□□ 1.87
PNKP-218ENST00000625299 AEBP2Q6ZN18 517 aaPredicted RBP26.74■■□□□ 1.87
PNKP-218ENST00000625299 GRIN2AQ12879 1464 aa26.65■■□□□ 1.86
PNKP-218ENST00000625299 ERCC6L2Q5T890 1561 aa26.65■■□□□ 1.86
PNKP-218ENST00000625299 ADAMTS12P58397 1594 aa26.61■■□□□ 1.85
PNKP-218ENST00000625299 CEP170Q5SW79 1584 aa26.58■■□□□ 1.85
PNKP-218ENST00000625299 WRNQ14191 1432 aaPredicted RBP eCLIP26.58■■□□□ 1.85
PNKP-218ENST00000625299 SUPT5HO00267 1087 aaKnown RBP26.58■■□□□ 1.85
PNKP-218ENST00000625299 NUP160Q12769 1436 aa26.54■■□□□ 1.84
PNKP-218ENST00000625299 BIVM-ERCC5R4GMW8 1640 aa26.49■■□□□ 1.83
PNKP-218ENST00000625299 FHAD1B1AJZ9 1412 aa26.48■■□□□ 1.83
PNKP-218ENST00000625299 TOP2BQ02880 1626 aa26.48■■□□□ 1.83
PNKP-218ENST00000625299 SHROOM2Q13796 1616 aa26.47■■□□□ 1.83
PNKP-218ENST00000625299 ERICH3Q5RHP9 1530 aa26.4■■□□□ 1.82
PNKP-218ENST00000625299 KIF13AQ9H1H9 1805 aa26.36■■□□□ 1.81
PNKP-218ENST00000625299 PRG4Q92954 1404 aaPredicted RBP26.36■■□□□ 1.81
PNKP-218ENST00000625299 JPH4Q96JJ6 628 aa26.27■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms