RNA–Protein interactions for RNA: ENST00000624811.1

USH1C-211, Transcript of USH1 protein network component harmonin, humanhuman

Gene USH1C, Length 1,194 nt, Biotype TEC, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-211ENST00000624811 NISCHQ9Y2I1 1504 aa34.23■■■■□ 3.07
USH1C-211ENST00000624811 CCDC180Q9P1Z9 1646 aa30.69■■■□□ 2.5
USH1C-211ENST00000624811 ABCC9O60706 1549 aa30.63■■■□□ 2.49
USH1C-211ENST00000624811 RB1CC1Q8TDY2 1594 aa29.16■■■□□ 2.26
USH1C-211ENST00000624811 NACADO15069 1562 aa28.95■■■□□ 2.22
USH1C-211ENST00000624811 DCAF8L2P0C7V8 631 aa28.94■■■□□ 2.22
USH1C-211ENST00000624811 UNC13AQ9UPW8 1703 aa28.61■■■□□ 2.17
USH1C-211ENST00000624811 DNAJC5BQ9UF47 199 aa28.59■■■□□ 2.17
USH1C-211ENST00000624811 PABPN1Q86U42 306 aaKnown RBP eCLIP28.53■■■□□ 2.16
USH1C-211ENST00000624811 MYO15BQ96JP2 1530 aa28.5■■■□□ 2.15
USH1C-211ENST00000624811 ZCCHC6Q5VYS8 1495 aaKnown RBP28.39■■■□□ 2.13
USH1C-211ENST00000624811 BICRAQ9NZM4 1560 aa28.32■■■□□ 2.12
USH1C-211ENST00000624811 DCAF1Q9Y4B6 1507 aa28.22■■■□□ 2.11
USH1C-211ENST00000624811 SCRIBQ14160 1630 aa28.06■■■□□ 2.08
USH1C-211ENST00000624811 SHROOM4Q9ULL8 1493 aa27.83■■■□□ 2.04
USH1C-211ENST00000624811 CC2D2AQ9P2K1 1620 aa27.67■■■□□ 2.02
USH1C-211ENST00000624811 EIF4G1Q04637 1599 aaKnown RBP27.61■■■□□ 2.01
USH1C-211ENST00000624811 CECR2Q9BXF3 1484 aa27.54■■■□□ 2
USH1C-211ENST00000624811 SMARCA4P51532 1647 aa26.72■■□□□ 1.87
USH1C-211ENST00000624811 NCAPD3P42695 1498 aa26.69■■□□□ 1.86
USH1C-211ENST00000624811 ATAD2BQ9ULI0 1458 aa26.68■■□□□ 1.86
USH1C-211ENST00000624811 SMARCA2P51531 1590 aa26.6■■□□□ 1.85
USH1C-211ENST00000624811 BAZ1AQ9NRL2 1556 aaPredicted RBP26.57■■□□□ 1.84
USH1C-211ENST00000624811 HMGXB3Q12766 1538 aa26.54■■□□□ 1.84
USH1C-211ENST00000624811 BAZ1BQ9UIG0 1483 aaKnown RBP26.45■■□□□ 1.82
USH1C-211ENST00000624811 ERCC6Q03468 1493 aa26.42■■□□□ 1.82
USH1C-211ENST00000624811 MROH2BQ7Z745 1585 aa26.41■■□□□ 1.82
USH1C-211ENST00000624811 PEG3Q9GZU2 1588 aa26.38■■□□□ 1.81
USH1C-211ENST00000624811 NESP48681 1621 aa26.36■■□□□ 1.81
USH1C-211ENST00000624811 CUX2O14529 1486 aa26.26■■□□□ 1.79
USH1C-211ENST00000624811 WIZO95785 1651 aa26.16■■□□□ 1.78
USH1C-211ENST00000624811 LAMC3Q9Y6N6 1575 aa26.12■■□□□ 1.77
USH1C-211ENST00000624811 DNAJC5Q9H3Z4 198 aa26.11■■□□□ 1.77
USH1C-211ENST00000624811 KIF21AQ7Z4S6 1674 aa26.06■■□□□ 1.76
USH1C-211ENST00000624811 THOC2Q8NI27 1593 aaKnown RBP26.04■■□□□ 1.76
USH1C-211ENST00000624811 PDS5BQ9NTI5 1447 aa25.94■■□□□ 1.74
USH1C-211ENST00000624811 CADPSQ9ULU8 1353 aa25.91■■□□□ 1.74
USH1C-211ENST00000624811 RSF1Q96T23 1441 aaPredicted RBP25.87■■□□□ 1.73
USH1C-211ENST00000624811 TOP2AP11388 1531 aaKnown RBP25.77■■□□□ 1.72
USH1C-211ENST00000624811 MRC2Q9UBG0 1479 aa25.75■■□□□ 1.71
USH1C-211ENST00000624811 WDR62O43379 1518 aa25.68■■□□□ 1.7
USH1C-211ENST00000624811 CEP164Q9UPV0 1460 aa25.67■■□□□ 1.7
USH1C-211ENST00000624811 FANCD2Q9BXW9 1451 aa25.66■■□□□ 1.7
USH1C-211ENST00000624811 CFTRP13569 1480 aa25.63■■□□□ 1.69
USH1C-211ENST00000624811 PRDM2Q13029 1718 aa25.51■■□□□ 1.68
USH1C-211ENST00000624811 CCDC88BA6NC98 1476 aa25.47■■□□□ 1.67
USH1C-211ENST00000624811 URB2Q14146 1524 aaKnown RBP25.45■■□□□ 1.66
USH1C-211ENST00000624811 TOPBP1Q92547 1522 aa25.19■■□□□ 1.62
USH1C-211ENST00000624811 ZNF608Q9ULD9 1512 aaPredicted RBP25.14■■□□□ 1.62
USH1C-211ENST00000624811 TRIM41Q8WV44 630 aa25.14■■□□□ 1.62
USH1C-211ENST00000624811 IFT140Q96RY7 1462 aa25.14■■□□□ 1.61
USH1C-211ENST00000624811 DNMBPQ6XZF7 1577 aa25.11■■□□□ 1.61
USH1C-211ENST00000624811 OSCARQ8IYS5 282 aa25.09■■□□□ 1.61
USH1C-211ENST00000624811 ABCC8Q09428 1581 aa25.08■■□□□ 1.61
USH1C-211ENST00000624811 EIF4G3O43432 1585 aaKnown RBP25.02■■□□□ 1.6
USH1C-211ENST00000624811 TARBP1Q13395 1621 aaKnown RBP24.97■■□□□ 1.59
USH1C-211ENST00000624811 POLA1P09884 1462 aaPredicted RBP24.93■■□□□ 1.58
USH1C-211ENST00000624811 AQRO60306 1485 aaKnown RBP eCLIP24.91■■□□□ 1.58
USH1C-211ENST00000624811 SUPT5HO00267 1087 aaKnown RBP24.91■■□□□ 1.58
USH1C-211ENST00000624811 RAD54L2Q9Y4B4 1467 aa24.88■■□□□ 1.57
USH1C-211ENST00000624811 CHD1O14646 1710 aa24.86■■□□□ 1.57
USH1C-211ENST00000624811 RIMBP3CA6NJZ7 1639 aa24.84■■□□□ 1.57
USH1C-211ENST00000624811 RIMBP3BA6NNM3 1639 aa24.84■■□□□ 1.57
USH1C-211ENST00000624811 RIMBP3Q9UFD9 1639 aa24.84■■□□□ 1.57
USH1C-211ENST00000624811 FGD5Q6ZNL6 1462 aa24.82■■□□□ 1.56
USH1C-211ENST00000624811 CUX1P39880 1505 aa24.81■■□□□ 1.56
USH1C-211ENST00000624811 SOGA1O94964 1423 aa24.81■■□□□ 1.56
USH1C-211ENST00000624811 TDRD9Q8NDG6 1382 aaKnown RBP24.78■■□□□ 1.56
USH1C-211ENST00000624811 FBLN2P98095 1184 aa24.76■■□□□ 1.55
USH1C-211ENST00000624811 ARHGEF11O15085 1522 aa24.74■■□□□ 1.55
USH1C-211ENST00000624811 SNAPC4Q5SXM2 1469 aa24.67■■□□□ 1.54
USH1C-211ENST00000624811 WDR97A6NE52 1622 aa24.66■■□□□ 1.54
USH1C-211ENST00000624811 PBRM1Q86U86 1689 aa24.59■■□□□ 1.53
USH1C-211ENST00000624811 GRIN2BQ13224 1484 aa24.58■■□□□ 1.52
USH1C-211ENST00000624811 CYB5RLQ6IPT4 315 aa24.55■■□□□ 1.52
USH1C-211ENST00000624811 MAGI1Q96QZ7 1491 aaPredicted RBP24.55■■□□□ 1.52
USH1C-211ENST00000624811 CHMP7Q8WUX9 453 aaPredicted RBP24.54■■□□□ 1.52
USH1C-211ENST00000624811 GAPVD1Q14C86 1478 aa24.51■■□□□ 1.51
USH1C-211ENST00000624811 ARAP1Q96P48 1450 aa24.5■■□□□ 1.51
USH1C-211ENST00000624811 ABCA10Q8WWZ4 1543 aa24.5■■□□□ 1.51
USH1C-211ENST00000624811 SYNJ1O43426 1573 aa24.5■■□□□ 1.51
USH1C-211ENST00000624811 ABCA5Q8WWZ7 1642 aa24.5■■□□□ 1.51
USH1C-211ENST00000624811 CLASP1Q7Z460 1538 aa24.49■■□□□ 1.51
USH1C-211ENST00000624811 SYNJ2O15056 1496 aa24.48■■□□□ 1.51
USH1C-211ENST00000624811 BIVM-ERCC5R4GMW8 1640 aa24.46■■□□□ 1.51
USH1C-211ENST00000624811 TOP2BQ02880 1626 aa24.43■■□□□ 1.5
USH1C-211ENST00000624811 WRNQ14191 1432 aaPredicted RBP eCLIP24.42■■□□□ 1.5
USH1C-211ENST00000624811 ADAMTS12P58397 1594 aa24.31■■□□□ 1.48
USH1C-211ENST00000624811 GRIN2AQ12879 1464 aa24.27■■□□□ 1.48
USH1C-211ENST00000624811 TRHP20396 242 aaPredicted RBP24.27■■□□□ 1.48
USH1C-211ENST00000624811 CEP170Q5SW79 1584 aa24.22■■□□□ 1.47
USH1C-211ENST00000624811 ERICH3Q5RHP9 1530 aa24.19■■□□□ 1.46
USH1C-211ENST00000624811 FHAD1B1AJZ9 1412 aa24.18■■□□□ 1.46
USH1C-211ENST00000624811 ERCC6L2Q5T890 1561 aa24.18■■□□□ 1.46
USH1C-211ENST00000624811 NUP160Q12769 1436 aa24.16■■□□□ 1.46
USH1C-211ENST00000624811 SHROOM2Q13796 1616 aa24.08■■□□□ 1.45
USH1C-211ENST00000624811 RUSC2Q8N2Y8 1516 aa23.97■■□□□ 1.43
USH1C-211ENST00000624811 PRG4Q92954 1404 aaPredicted RBP23.95■■□□□ 1.42
USH1C-211ENST00000624811 KIF27Q86VH2 1401 aa23.93■■□□□ 1.42
USH1C-211ENST00000624811 JPH4Q96JJ6 628 aa23.92■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms