RNA–Protein interactions for RNA: ENST00000624688.2

C3orf56-201, Transcript of chromosome 3 open reading frame 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C3orf56, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C3orf56-201ENST00000624688 NISCHQ9Y2I1 1504 aa29.52■■■□□ 2.32
C3orf56-201ENST00000624688 CCDC180Q9P1Z9 1646 aa25.6■■□□□ 1.69
C3orf56-201ENST00000624688 ZCCHC6Q5VYS8 1495 aaKnown RBP24.85■■□□□ 1.57
C3orf56-201ENST00000624688 DCAF1Q9Y4B6 1507 aa24.38■■□□□ 1.49
C3orf56-201ENST00000624688 SHROOM4Q9ULL8 1493 aa24.29■■□□□ 1.48
C3orf56-201ENST00000624688 DCAF8L2P0C7V8 631 aa24.27■■□□□ 1.48
C3orf56-201ENST00000624688 ABCC9O60706 1549 aa24.02■■□□□ 1.44
C3orf56-201ENST00000624688 MYO15BQ96JP2 1530 aa23.98■■□□□ 1.43
C3orf56-201ENST00000624688 NACADO15069 1562 aa23.77■■□□□ 1.4
C3orf56-201ENST00000624688 SCRIBQ14160 1630 aa23.62■■□□□ 1.37
C3orf56-201ENST00000624688 RB1CC1Q8TDY2 1594 aa23.5■■□□□ 1.35
C3orf56-201ENST00000624688 SUPT5HO00267 1087 aaKnown RBP23.47■■□□□ 1.35
C3orf56-201ENST00000624688 UNC13AQ9UPW8 1703 aa23.13■■□□□ 1.29
C3orf56-201ENST00000624688 RSF1Q96T23 1441 aaPredicted RBP23.01■■□□□ 1.27
C3orf56-201ENST00000624688 CECR2Q9BXF3 1484 aa22.96■■□□□ 1.27
C3orf56-201ENST00000624688 BICRAQ9NZM4 1560 aa22.87■■□□□ 1.25
C3orf56-201ENST00000624688 MROH2BQ7Z745 1585 aa22.85■■□□□ 1.25
C3orf56-201ENST00000624688 BAZ1AQ9NRL2 1556 aaPredicted RBP22.74■■□□□ 1.23
C3orf56-201ENST00000624688 PABPN1Q86U42 306 aaKnown RBP eCLIP22.71■■□□□ 1.23
C3orf56-201ENST00000624688 WIZO95785 1651 aa22.68■■□□□ 1.22
C3orf56-201ENST00000624688 SMARCA4P51532 1647 aa22.65■■□□□ 1.22
C3orf56-201ENST00000624688 CHIC1Q5VXU3 224 aa22.62■■□□□ 1.21
C3orf56-201ENST00000624688 TOP2AP11388 1531 aaKnown RBP22.41■■□□□ 1.18
C3orf56-201ENST00000624688 PEG3Q9GZU2 1588 aa22.35■■□□□ 1.17
C3orf56-201ENST00000624688 SMARCA2P51531 1590 aa22.23■■□□□ 1.15
C3orf56-201ENST00000624688 CCDC88BA6NC98 1476 aa22.21■■□□□ 1.15
C3orf56-201ENST00000624688 ATAD2BQ9ULI0 1458 aa22.2■■□□□ 1.14
C3orf56-201ENST00000624688 EIF4G1Q04637 1599 aaKnown RBP22.19■■□□□ 1.14
C3orf56-201ENST00000624688 BAZ1BQ9UIG0 1483 aaKnown RBP22.07■■□□□ 1.12
C3orf56-201ENST00000624688 TRIM41Q8WV44 630 aa22.01■■□□□ 1.11
C3orf56-201ENST00000624688 NCAPD3P42695 1498 aa21.95■■□□□ 1.1
C3orf56-201ENST00000624688 HMGXB3Q12766 1538 aa21.94■■□□□ 1.1
C3orf56-201ENST00000624688 ABCC8Q09428 1581 aa21.85■■□□□ 1.09
C3orf56-201ENST00000624688 LOC105371045A0A1W2PR82 267 aa21.79■■□□□ 1.08
C3orf56-201ENST00000624688 CC2D2AQ9P2K1 1620 aa21.75■■□□□ 1.07
C3orf56-201ENST00000624688 FAM9AQ8IZU1 332 aaPredicted RBP21.66■■□□□ 1.06
C3orf56-201ENST00000624688 WRNQ14191 1432 aaPredicted RBP eCLIP21.63■■□□□ 1.05
C3orf56-201ENST00000624688 SYNJ1O43426 1573 aa21.58■■□□□ 1.04
C3orf56-201ENST00000624688 CFTRP13569 1480 aa21.54■■□□□ 1.04
C3orf56-201ENST00000624688 SOGA1O94964 1423 aa21.48■■□□□ 1.03
C3orf56-201ENST00000624688 PRDM2Q13029 1718 aa21.45■■□□□ 1.02
C3orf56-201ENST00000624688 TOP2BQ02880 1626 aa21.43■■□□□ 1.02
C3orf56-201ENST00000624688 RUSC2Q8N2Y8 1516 aa21.41■■□□□ 1.02
C3orf56-201ENST00000624688 BIVM-ERCC5R4GMW8 1640 aa21.41■■□□□ 1.02
C3orf56-201ENST00000624688 EEA1Q15075 1411 aa21.41■■□□□ 1.02
C3orf56-201ENST00000624688 CADPSQ9ULU8 1353 aa21.4■■□□□ 1.02
C3orf56-201ENST00000624688 EHMT2Q96KQ7 1210 aa21.37■■□□□ 1.01
C3orf56-201ENST00000624688 CUX1P39880 1505 aa21.34■■□□□ 1.01
C3orf56-201ENST00000624688 CSRNP3Q8WYN3 585 aa21.3■■□□□ 1
C3orf56-201ENST00000624688 NESP48681 1621 aa21.2■□□□□ 0.98
C3orf56-201ENST00000624688 DNAJC5BQ9UF47 199 aa21.19■□□□□ 0.98
C3orf56-201ENST00000624688 FANCD2Q9BXW9 1451 aa21.18■□□□□ 0.98
C3orf56-201ENST00000624688 KIF21BO75037 1637 aa21.17■□□□□ 0.98
C3orf56-201ENST00000624688 GOLGA3Q08378 1498 aa21.15■□□□□ 0.98
C3orf56-201ENST00000624688 LAMC3Q9Y6N6 1575 aa21.15■□□□□ 0.98
C3orf56-201ENST00000624688 TNIKQ9UKE5 1360 aa21.14■□□□□ 0.98
C3orf56-201ENST00000624688 CEP164Q9UPV0 1460 aa21.12■□□□□ 0.97
C3orf56-201ENST00000624688 CEP162Q5TB80 1403 aa21.06■□□□□ 0.96
C3orf56-201ENST00000624688 FGD5Q6ZNL6 1462 aa21.05■□□□□ 0.96
C3orf56-201ENST00000624688 DNMBPQ6XZF7 1577 aa21.04■□□□□ 0.96
C3orf56-201ENST00000624688 KIF27Q86VH2 1401 aa21.03■□□□□ 0.96
C3orf56-201ENST00000624688 UBTFP17480 764 aaKnown RBP21.03■□□□□ 0.96
C3orf56-201ENST00000624688 RAPGEF2Q9Y4G8 1499 aa21.02■□□□□ 0.96
C3orf56-201ENST00000624688 PCGF6Q9BYE7 350 aa21.01■□□□□ 0.95
C3orf56-201ENST00000624688 PRXQ9BXM0 1461 aa20.99■□□□□ 0.95
C3orf56-201ENST00000624688 TOPBP1Q92547 1522 aa20.99■□□□□ 0.95
C3orf56-201ENST00000624688 ERICH3Q5RHP9 1530 aa20.96■□□□□ 0.95
C3orf56-201ENST00000624688 PDS5BQ9NTI5 1447 aa20.96■□□□□ 0.95
C3orf56-201ENST00000624688 CUX2O14529 1486 aa20.95■□□□□ 0.94
C3orf56-201ENST00000624688 URB2Q14146 1524 aaKnown RBP20.94■□□□□ 0.94
C3orf56-201ENST00000624688 KIF21AQ7Z4S6 1674 aa20.93■□□□□ 0.94
C3orf56-201ENST00000624688 TRIM26Q12899 539 aaPredicted RBP20.92■□□□□ 0.94
C3orf56-201ENST00000624688 POLA1P09884 1462 aaPredicted RBP20.91■□□□□ 0.94
C3orf56-201ENST00000624688 RAD54L2Q9Y4B4 1467 aa20.87■□□□□ 0.93
C3orf56-201ENST00000624688 IGF1RP08069 1367 aa20.86■□□□□ 0.93
C3orf56-201ENST00000624688 ABCA10Q8WWZ4 1543 aa20.86■□□□□ 0.93
C3orf56-201ENST00000624688 CLIP1P30622 1438 aa20.83■□□□□ 0.93
C3orf56-201ENST00000624688 WDR97A6NE52 1622 aa20.8■□□□□ 0.92
C3orf56-201ENST00000624688 PPARGC1BQ86YN6 1023 aaKnown RBP20.75■□□□□ 0.91
C3orf56-201ENST00000624688 CARMIL1Q5VZK9 1371 aa20.74■□□□□ 0.91
C3orf56-201ENST00000624688 MRC2Q9UBG0 1479 aa20.71■□□□□ 0.91
C3orf56-201ENST00000624688 VPS8Q8N3P4 1428 aa20.69■□□□□ 0.9
C3orf56-201ENST00000624688 ABCA5Q8WWZ7 1642 aa20.69■□□□□ 0.9
C3orf56-201ENST00000624688 TARBP1Q13395 1621 aaKnown RBP20.67■□□□□ 0.9
C3orf56-201ENST00000624688 CUL7Q14999 1698 aa20.65■□□□□ 0.9
C3orf56-201ENST00000624688 RANGAP1P46060 587 aaPredicted RBP20.65■□□□□ 0.9
C3orf56-201ENST00000624688 ARAP1Q96P48 1450 aa20.64■□□□□ 0.89
C3orf56-201ENST00000624688 TDRD9Q8NDG6 1382 aaKnown RBP20.62■□□□□ 0.89
C3orf56-201ENST00000624688 HRCP23327 699 aa20.61■□□□□ 0.89
C3orf56-201ENST00000624688 GAPVD1Q14C86 1478 aa20.6■□□□□ 0.89
C3orf56-201ENST00000624688 WDR62O43379 1518 aa20.6■□□□□ 0.89
C3orf56-201ENST00000624688 ARHGAP35Q9NRY4 1499 aa20.58■□□□□ 0.88
C3orf56-201ENST00000624688 ERCC6Q03468 1493 aa20.52■□□□□ 0.87
C3orf56-201ENST00000624688 THOC2Q8NI27 1593 aaKnown RBP20.51■□□□□ 0.87
C3orf56-201ENST00000624688 TTBK1Q5TCY1 1321 aaPredicted RBP20.51■□□□□ 0.87
C3orf56-201ENST00000624688 PBRM1Q86U86 1689 aa20.5■□□□□ 0.87
C3orf56-201ENST00000624688 IFT140Q96RY7 1462 aa20.48■□□□□ 0.87
C3orf56-201ENST00000624688 CTTNBP2Q8WZ74 1663 aa20.48■□□□□ 0.87
C3orf56-201ENST00000624688 AQRO60306 1485 aaKnown RBP eCLIP20.46■□□□□ 0.87
C3orf56-201ENST00000624688 ZNF608Q9ULD9 1512 aaPredicted RBP20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms