RNA–Protein interactions for RNA: ENST00000624138.3

LINC00963-218, long intergenic non-protein coding RNA 963, humanhuman

TSL 5

Gene LINC00963, Length 261 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00963-218ENST00000624138 NISCHQ9Y2I1 1504 aa18.9■□□□□ 0.62
LINC00963-218ENST00000624138 ABCC9O60706 1549 aa17.51■□□□□ 0.39
LINC00963-218ENST00000624138 CCDC180Q9P1Z9 1646 aa17.22■□□□□ 0.35
LINC00963-218ENST00000624138 DNAJC5BQ9UF47 199 aa16.83■□□□□ 0.28
LINC00963-218ENST00000624138 RB1CC1Q8TDY2 1594 aa16.55■□□□□ 0.24
LINC00963-218ENST00000624138 NACADO15069 1562 aa16.34■□□□□ 0.21
LINC00963-218ENST00000624138 UNC13AQ9UPW8 1703 aa16.32■□□□□ 0.2
LINC00963-218ENST00000624138 PABPN1Q86U42 306 aaKnown RBP eCLIP16.2■□□□□ 0.18
LINC00963-218ENST00000624138 BICRAQ9NZM4 1560 aa16.11■□□□□ 0.17
LINC00963-218ENST00000624138 DCAF8L2P0C7V8 631 aa16.02■□□□□ 0.16
LINC00963-218ENST00000624138 MYO15BQ96JP2 1530 aa15.99■□□□□ 0.15
LINC00963-218ENST00000624138 CC2D2AQ9P2K1 1620 aa15.87■□□□□ 0.13
LINC00963-218ENST00000624138 CECR2Q9BXF3 1484 aa15.83■□□□□ 0.12
LINC00963-218ENST00000624138 SHROOM4Q9ULL8 1493 aa15.82■□□□□ 0.12
LINC00963-218ENST00000624138 DNAJC5Q9H3Z4 198 aa15.78■□□□□ 0.12
LINC00963-218ENST00000624138 EIF4G1Q04637 1599 aaKnown RBP15.71■□□□□ 0.11
LINC00963-218ENST00000624138 DCAF1Q9Y4B6 1507 aa15.63■□□□□ 0.09
LINC00963-218ENST00000624138 SCRIBQ14160 1630 aa15.57■□□□□ 0.08
LINC00963-218ENST00000624138 ZCCHC6Q5VYS8 1495 aaKnown RBP15.56■□□□□ 0.08
LINC00963-218ENST00000624138 CUX2O14529 1486 aa15.31■□□□□ 0.04
LINC00963-218ENST00000624138 ERCC6Q03468 1493 aa15.13■□□□□ 0.01
LINC00963-218ENST00000624138 NCAPD3P42695 1498 aa15.07■□□□□ 0
LINC00963-218ENST00000624138 ATAD2BQ9ULI0 1458 aa14.95□□□□□ -0.02
LINC00963-218ENST00000624138 NESP48681 1621 aa14.94□□□□□ -0.02
LINC00963-218ENST00000624138 THOC2Q8NI27 1593 aaKnown RBP14.94□□□□□ -0.02
LINC00963-218ENST00000624138 HMGXB3Q12766 1538 aa14.92□□□□□ -0.02
LINC00963-218ENST00000624138 SMARCA2P51531 1590 aa14.9□□□□□ -0.02
LINC00963-218ENST00000624138 SMARCA4P51532 1647 aa14.85□□□□□ -0.03
LINC00963-218ENST00000624138 KIF21AQ7Z4S6 1674 aa14.84□□□□□ -0.03
LINC00963-218ENST00000624138 TRIM41Q8WV44 630 aa14.83□□□□□ -0.04
LINC00963-218ENST00000624138 LAMC3Q9Y6N6 1575 aa14.82□□□□□ -0.04
LINC00963-218ENST00000624138 BAZ1BQ9UIG0 1483 aaKnown RBP14.75□□□□□ -0.05
LINC00963-218ENST00000624138 PEG3Q9GZU2 1588 aa14.74□□□□□ -0.05
LINC00963-218ENST00000624138 BAZ1AQ9NRL2 1556 aaPredicted RBP14.7□□□□□ -0.06
LINC00963-218ENST00000624138 PDS5BQ9NTI5 1447 aa14.69□□□□□ -0.06
LINC00963-218ENST00000624138 WDR62O43379 1518 aa14.61□□□□□ -0.07
LINC00963-218ENST00000624138 MRC2Q9UBG0 1479 aa14.59□□□□□ -0.07
LINC00963-218ENST00000624138 CADPSQ9ULU8 1353 aa14.56□□□□□ -0.08
LINC00963-218ENST00000624138 MROH2BQ7Z745 1585 aa14.55□□□□□ -0.08
LINC00963-218ENST00000624138 OSCARQ8IYS5 282 aa14.51□□□□□ -0.09
LINC00963-218ENST00000624138 CEP164Q9UPV0 1460 aa14.44□□□□□ -0.1
LINC00963-218ENST00000624138 RIMBP3CA6NJZ7 1639 aa14.44□□□□□ -0.1
LINC00963-218ENST00000624138 RIMBP3BA6NNM3 1639 aa14.44□□□□□ -0.1
LINC00963-218ENST00000624138 RIMBP3Q9UFD9 1639 aa14.44□□□□□ -0.1
LINC00963-218ENST00000624138 WIZO95785 1651 aa14.39□□□□□ -0.11
LINC00963-218ENST00000624138 FANCD2Q9BXW9 1451 aa14.39□□□□□ -0.11
LINC00963-218ENST00000624138 CFTRP13569 1480 aa14.32□□□□□ -0.12
LINC00963-218ENST00000624138 URB2Q14146 1524 aaKnown RBP14.32□□□□□ -0.12
LINC00963-218ENST00000624138 PRDM2Q13029 1718 aa14.3□□□□□ -0.12
LINC00963-218ENST00000624138 ARHGEF11O15085 1522 aa14.3□□□□□ -0.12
LINC00963-218ENST00000624138 ZNF608Q9ULD9 1512 aaPredicted RBP14.2□□□□□ -0.14
LINC00963-218ENST00000624138 CHD1O14646 1710 aa14.18□□□□□ -0.14
LINC00963-218ENST00000624138 IFT140Q96RY7 1462 aa14.18□□□□□ -0.14
LINC00963-218ENST00000624138 CYB5RLQ6IPT4 315 aa14.17□□□□□ -0.14
LINC00963-218ENST00000624138 TOP2AP11388 1531 aaKnown RBP14.15□□□□□ -0.14
LINC00963-218ENST00000624138 TRHP20396 242 aaPredicted RBP14.13□□□□□ -0.15
LINC00963-218ENST00000624138 EIF4G3O43432 1585 aaKnown RBP14.13□□□□□ -0.15
LINC00963-218ENST00000624138 ARAP1Q96P48 1450 aa14.12□□□□□ -0.15
LINC00963-218ENST00000624138 TOPBP1Q92547 1522 aa14.09□□□□□ -0.15
LINC00963-218ENST00000624138 RSF1Q96T23 1441 aaPredicted RBP14.07□□□□□ -0.16
LINC00963-218ENST00000624138 ABCC8Q09428 1581 aa14.05□□□□□ -0.16
LINC00963-218ENST00000624138 TARBP1Q13395 1621 aaKnown RBP14.04□□□□□ -0.16
LINC00963-218ENST00000624138 AEBP2Q6ZN18 517 aaPredicted RBP14.03□□□□□ -0.16
LINC00963-218ENST00000624138 DNMBPQ6XZF7 1577 aa14.01□□□□□ -0.17
LINC00963-218ENST00000624138 AQRO60306 1485 aaKnown RBP eCLIP14□□□□□ -0.17
LINC00963-218ENST00000624138 CCDC88BA6NC98 1476 aa13.98□□□□□ -0.17
LINC00963-218ENST00000624138 FBLN2P98095 1184 aa13.94□□□□□ -0.18
LINC00963-218ENST00000624138 CLASP1Q7Z460 1538 aa13.94□□□□□ -0.18
LINC00963-218ENST00000624138 POLA1P09884 1462 aaPredicted RBP13.91□□□□□ -0.18
LINC00963-218ENST00000624138 WDR97A6NE52 1622 aa13.89□□□□□ -0.19
LINC00963-218ENST00000624138 SYNJ1O43426 1573 aa13.88□□□□□ -0.19
LINC00963-218ENST00000624138 RAD54L2Q9Y4B4 1467 aa13.85□□□□□ -0.19
LINC00963-218ENST00000624138 SNAPC4Q5SXM2 1469 aa13.84□□□□□ -0.19
LINC00963-218ENST00000624138 TDRD9Q8NDG6 1382 aaKnown RBP13.83□□□□□ -0.2
LINC00963-218ENST00000624138 SOGA1O94964 1423 aa13.82□□□□□ -0.2
LINC00963-218ENST00000624138 MAGI1Q96QZ7 1491 aaPredicted RBP13.81□□□□□ -0.2
LINC00963-218ENST00000624138 CHMP7Q8WUX9 453 aaPredicted RBP13.79□□□□□ -0.2
LINC00963-218ENST00000624138 GAPVD1Q14C86 1478 aa13.78□□□□□ -0.2
LINC00963-218ENST00000624138 PBRM1Q86U86 1689 aa13.78□□□□□ -0.2
LINC00963-218ENST00000624138 SYNJ2O15056 1496 aa13.77□□□□□ -0.21
LINC00963-218ENST00000624138 GRIN2BQ13224 1484 aa13.76□□□□□ -0.21
LINC00963-218ENST00000624138 FGD5Q6ZNL6 1462 aa13.75□□□□□ -0.21
LINC00963-218ENST00000624138 KIF13AQ9H1H9 1805 aa13.75□□□□□ -0.21
LINC00963-218ENST00000624138 CUX1P39880 1505 aa13.69□□□□□ -0.22
LINC00963-218ENST00000624138 ERCC6L2Q5T890 1561 aa13.67□□□□□ -0.22
LINC00963-218ENST00000624138 ABCA5Q8WWZ7 1642 aa13.64□□□□□ -0.23
LINC00963-218ENST00000624138 SHROOM2Q13796 1616 aa13.62□□□□□ -0.23
LINC00963-218ENST00000624138 CEP170Q5SW79 1584 aa13.62□□□□□ -0.23
LINC00963-218ENST00000624138 ABCA10Q8WWZ4 1543 aa13.59□□□□□ -0.23
LINC00963-218ENST00000624138 GRIN2AQ12879 1464 aa13.59□□□□□ -0.23
LINC00963-218ENST00000624138 NUP160Q12769 1436 aa13.56□□□□□ -0.24
LINC00963-218ENST00000624138 ADAMTS12P58397 1594 aa13.54□□□□□ -0.24
LINC00963-218ENST00000624138 ILDR1Q86SU0 546 aaPredicted RBP13.5□□□□□ -0.25
LINC00963-218ENST00000624138 ABCC10Q5T3U5 1492 aa13.49□□□□□ -0.25
LINC00963-218ENST00000624138 KDM4FA0A1W2PPD8 638 aa13.49□□□□□ -0.25
LINC00963-218ENST00000624138 TSPOAP1O95153 1857 aa13.48□□□□□ -0.25
LINC00963-218ENST00000624138 DIP2BQ9P265 1576 aa13.47□□□□□ -0.25
LINC00963-218ENST00000624138 MAPKBP1O60336 1514 aa13.46□□□□□ -0.25
LINC00963-218ENST00000624138 FHAD1B1AJZ9 1412 aa13.46□□□□□ -0.26
LINC00963-218ENST00000624138 KDM6BO15054 1643 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms