RNA–Protein interactions for RNA: ENST00000623364.3

CDKL5-204, Transcript of cyclin dependent kinase like 5, humanhuman

TSL 3

Gene CDKL5, Length 483 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5-204ENST00000623364 DNAJC5BQ9UF47 199 aa17.63■□□□□ 0.41
CDKL5-204ENST00000623364 ABCC9O60706 1549 aa17.54■□□□□ 0.4
CDKL5-204ENST00000623364 NISCHQ9Y2I1 1504 aa17.42■□□□□ 0.38
CDKL5-204ENST00000623364 DNAJC5Q9H3Z4 198 aa17.25■□□□□ 0.35
CDKL5-204ENST00000623364 AEBP2Q6ZN18 517 aaPredicted RBP16.34■□□□□ 0.21
CDKL5-204ENST00000623364 CCDC180Q9P1Z9 1646 aa16.22■□□□□ 0.19
CDKL5-204ENST00000623364 PABPN1Q86U42 306 aaKnown RBP eCLIP16.14■□□□□ 0.17
CDKL5-204ENST00000623364 RB1CC1Q8TDY2 1594 aa16.13■□□□□ 0.17
CDKL5-204ENST00000623364 CECR2Q9BXF3 1484 aa15.97■□□□□ 0.15
CDKL5-204ENST00000623364 TRIM41Q8WV44 630 aa15.95■□□□□ 0.14
CDKL5-204ENST00000623364 CC2D2AQ9P2K1 1620 aa15.76■□□□□ 0.11
CDKL5-204ENST00000623364 CUX2O14529 1486 aa15.71■□□□□ 0.1
CDKL5-204ENST00000623364 NACADO15069 1562 aa15.68■□□□□ 0.1
CDKL5-204ENST00000623364 UNC13AQ9UPW8 1703 aa15.67■□□□□ 0.1
CDKL5-204ENST00000623364 BICRAQ9NZM4 1560 aa15.63■□□□□ 0.09
CDKL5-204ENST00000623364 EIF4G1Q04637 1599 aaKnown RBP15.4■□□□□ 0.06
CDKL5-204ENST00000623364 DCAF8L2P0C7V8 631 aa15.38■□□□□ 0.05
CDKL5-204ENST00000623364 SHROOM4Q9ULL8 1493 aa15.36■□□□□ 0.05
CDKL5-204ENST00000623364 CHIC1Q5VXU3 224 aa15.33■□□□□ 0.04
CDKL5-204ENST00000623364 ERCC6Q03468 1493 aa15.3■□□□□ 0.04
CDKL5-204ENST00000623364 ILDR1Q86SU0 546 aaPredicted RBP15.02■□□□□ -0
CDKL5-204ENST00000623364 MYO15BQ96JP2 1530 aa15.01□□□□□ -0.01
CDKL5-204ENST00000623364 TRHP20396 242 aaPredicted RBP14.85□□□□□ -0.03
CDKL5-204ENST00000623364 OSCARQ8IYS5 282 aa14.82□□□□□ -0.04
CDKL5-204ENST00000623364 SCRIBQ14160 1630 aa14.77□□□□□ -0.04
CDKL5-204ENST00000623364 THOC2Q8NI27 1593 aaKnown RBP14.77□□□□□ -0.05
CDKL5-204ENST00000623364 BAZ1AQ9NRL2 1556 aaPredicted RBP14.68□□□□□ -0.06
CDKL5-204ENST00000623364 RIMBP3CA6NJZ7 1639 aa14.68□□□□□ -0.06
CDKL5-204ENST00000623364 RIMBP3BA6NNM3 1639 aa14.68□□□□□ -0.06
CDKL5-204ENST00000623364 RIMBP3Q9UFD9 1639 aa14.68□□□□□ -0.06
CDKL5-204ENST00000623364 NESP48681 1621 aa14.66□□□□□ -0.06
CDKL5-204ENST00000623364 SMARCA2P51531 1590 aa14.57□□□□□ -0.08
CDKL5-204ENST00000623364 CYB5RLQ6IPT4 315 aa14.54□□□□□ -0.08
CDKL5-204ENST00000623364 ARHGEF11O15085 1522 aa14.51□□□□□ -0.09
CDKL5-204ENST00000623364 NCAPD3P42695 1498 aa14.49□□□□□ -0.09
CDKL5-204ENST00000623364 KIF21AQ7Z4S6 1674 aa14.41□□□□□ -0.1
CDKL5-204ENST00000623364 PDS5BQ9NTI5 1447 aa14.39□□□□□ -0.11
CDKL5-204ENST00000623364 LAMC3Q9Y6N6 1575 aa14.38□□□□□ -0.11
CDKL5-204ENST00000623364 MRC2Q9UBG0 1479 aa14.31□□□□□ -0.12
CDKL5-204ENST00000623364 DCAF1Q9Y4B6 1507 aa14.31□□□□□ -0.12
CDKL5-204ENST00000623364 WDR62O43379 1518 aa14.29□□□□□ -0.12
CDKL5-204ENST00000623364 ARAP1Q96P48 1450 aa14.25□□□□□ -0.13
CDKL5-204ENST00000623364 HMGXB3Q12766 1538 aa14.24□□□□□ -0.13
CDKL5-204ENST00000623364 ATAD2BQ9ULI0 1458 aa14.24□□□□□ -0.13
CDKL5-204ENST00000623364 LMTK3Q96Q04 1460 aa14.18□□□□□ -0.14
CDKL5-204ENST00000623364 SOCS7O14512 581 aa14.16□□□□□ -0.14
CDKL5-204ENST00000623364 FBXO41Q8TF61 875 aa14.14□□□□□ -0.15
CDKL5-204ENST00000623364 ZCCHC6Q5VYS8 1495 aaKnown RBP14.12□□□□□ -0.15
CDKL5-204ENST00000623364 BAZ1BQ9UIG0 1483 aaKnown RBP14.06□□□□□ -0.16
CDKL5-204ENST00000623364 KDM4FA0A1W2PPD8 638 aa14.04□□□□□ -0.16
CDKL5-204ENST00000623364 RSF1Q96T23 1441 aaPredicted RBP14.04□□□□□ -0.16
CDKL5-204ENST00000623364 SENP3Q9H4L4 574 aaPredicted RBP14.02□□□□□ -0.17
CDKL5-204ENST00000623364 ERCC6L2Q5T890 1561 aa14.01□□□□□ -0.17
CDKL5-204ENST00000623364 CADPSQ9ULU8 1353 aa13.99□□□□□ -0.17
CDKL5-204ENST00000623364 CEP164Q9UPV0 1460 aa13.99□□□□□ -0.17
CDKL5-204ENST00000623364 ILDR2Q71H61 639 aa13.94□□□□□ -0.18
CDKL5-204ENST00000623364 SMARCA4P51532 1647 aa13.86□□□□□ -0.19
CDKL5-204ENST00000623364 HECW2Q9P2P5 1572 aa13.85□□□□□ -0.19
CDKL5-204ENST00000623364 FANCD2Q9BXW9 1451 aa13.83□□□□□ -0.2
CDKL5-204ENST00000623364 CHD1O14646 1710 aa13.83□□□□□ -0.2
CDKL5-204ENST00000623364 ZNF608Q9ULD9 1512 aaPredicted RBP13.83□□□□□ -0.2
CDKL5-204ENST00000623364 DISP3Q9P2K9 1392 aa13.83□□□□□ -0.2
CDKL5-204ENST00000623364 FBLN2P98095 1184 aa13.81□□□□□ -0.2
CDKL5-204ENST00000623364 PHF23Q9BUL5 403 aaPredicted RBP13.81□□□□□ -0.2
CDKL5-204ENST00000623364 URB2Q14146 1524 aaKnown RBP13.77□□□□□ -0.21
CDKL5-204ENST00000623364 IFT140Q96RY7 1462 aa13.76□□□□□ -0.21
CDKL5-204ENST00000623364 PEG3Q9GZU2 1588 aa13.74□□□□□ -0.21
CDKL5-204ENST00000623364 SYNJ2O15056 1496 aa13.71□□□□□ -0.21
CDKL5-204ENST00000623364 EIF4G3O43432 1585 aaKnown RBP13.67□□□□□ -0.22
CDKL5-204ENST00000623364 GAPVD1Q14C86 1478 aa13.66□□□□□ -0.22
CDKL5-204ENST00000623364 KIF13AQ9H1H9 1805 aa13.64□□□□□ -0.23
CDKL5-204ENST00000623364 CLASP1Q7Z460 1538 aa13.64□□□□□ -0.23
CDKL5-204ENST00000623364 ADGRL1O94910 1474 aa13.61□□□□□ -0.23
CDKL5-204ENST00000623364 KDM6BO15054 1643 aa13.59□□□□□ -0.23
CDKL5-204ENST00000623364 SYNJ1O43426 1573 aa13.56□□□□□ -0.24
CDKL5-204ENST00000623364 AQRO60306 1485 aaKnown RBP eCLIP13.55□□□□□ -0.24
CDKL5-204ENST00000623364 CFTRP13569 1480 aa13.54□□□□□ -0.24
CDKL5-204ENST00000623364 FAM69CQ0P6D2 419 aa13.52□□□□□ -0.25
CDKL5-204ENST00000623364 SPATA31D1Q6ZQQ2 1576 aa13.49□□□□□ -0.25
CDKL5-204ENST00000623364 CHMP7Q8WUX9 453 aaPredicted RBP13.48□□□□□ -0.25
CDKL5-204ENST00000623364 MROH2BQ7Z745 1585 aa13.44□□□□□ -0.26
CDKL5-204ENST00000623364 ABCC10Q5T3U5 1492 aa13.42□□□□□ -0.26
CDKL5-204ENST00000623364 TOPBP1Q92547 1522 aa13.4□□□□□ -0.26
CDKL5-204ENST00000623364 SNAPC4Q5SXM2 1469 aa13.37□□□□□ -0.27
CDKL5-204ENST00000623364 TARBP1Q13395 1621 aaKnown RBP13.36□□□□□ -0.27
CDKL5-204ENST00000623364 ABCC8Q09428 1581 aa13.34□□□□□ -0.27
CDKL5-204ENST00000623364 CERKQ8TCT0 537 aa13.33□□□□□ -0.28
CDKL5-204ENST00000623364 DIP2BQ9P265 1576 aa13.32□□□□□ -0.28
CDKL5-204ENST00000623364 TSPOAP1O95153 1857 aa13.31□□□□□ -0.28
CDKL5-204ENST00000623364 MAGI1Q96QZ7 1491 aaPredicted RBP13.3□□□□□ -0.28
CDKL5-204ENST00000623364 NPM1P06748 294 aaKnown RBP eCLIP13.29□□□□□ -0.28
CDKL5-204ENST00000623364 TDRD9Q8NDG6 1382 aaKnown RBP13.27□□□□□ -0.29
CDKL5-204ENST00000623364 TOP2BQ02880 1626 aa13.27□□□□□ -0.29
CDKL5-204ENST00000623364 PRDM2Q13029 1718 aa13.25□□□□□ -0.29
CDKL5-204ENST00000623364 MAPKBP1O60336 1514 aa13.24□□□□□ -0.29
CDKL5-204ENST00000623364 DNMBPQ6XZF7 1577 aa13.24□□□□□ -0.29
CDKL5-204ENST00000623364 CEP170Q5SW79 1584 aa13.18□□□□□ -0.3
CDKL5-204ENST00000623364 WDR97A6NE52 1622 aa13.17□□□□□ -0.3
CDKL5-204ENST00000623364 POLA1P09884 1462 aaPredicted RBP13.17□□□□□ -0.3
CDKL5-204ENST00000623364 GRIN2BQ13224 1484 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms