RNA–Protein interactions for RNA: ENST00000623266.1

PCDHB9-202, Transcript of protocadherin beta 9, humanhuman

TSL 4

Gene PCDHB9, Length 498 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB9-202ENST00000623266 NISCHQ9Y2I1 1504 aa22.92■■□□□ 1.26
PCDHB9-202ENST00000623266 ABCC9O60706 1549 aa20.55■□□□□ 0.88
PCDHB9-202ENST00000623266 CCDC180Q9P1Z9 1646 aa20.47■□□□□ 0.87
PCDHB9-202ENST00000623266 RB1CC1Q8TDY2 1594 aa19.5■□□□□ 0.71
PCDHB9-202ENST00000623266 DNAJC5BQ9UF47 199 aa19.45■□□□□ 0.7
PCDHB9-202ENST00000623266 DCAF8L2P0C7V8 631 aa19.41■□□□□ 0.7
PCDHB9-202ENST00000623266 NACADO15069 1562 aa19.39■□□□□ 0.69
PCDHB9-202ENST00000623266 PABPN1Q86U42 306 aaKnown RBP eCLIP19.2■□□□□ 0.66
PCDHB9-202ENST00000623266 UNC13AQ9UPW8 1703 aa19.16■□□□□ 0.66
PCDHB9-202ENST00000623266 MYO15BQ96JP2 1530 aa19.12■□□□□ 0.65
PCDHB9-202ENST00000623266 BICRAQ9NZM4 1560 aa19.03■□□□□ 0.64
PCDHB9-202ENST00000623266 ZCCHC6Q5VYS8 1495 aaKnown RBP18.94■□□□□ 0.62
PCDHB9-202ENST00000623266 DCAF1Q9Y4B6 1507 aa18.89■□□□□ 0.61
PCDHB9-202ENST00000623266 SCRIBQ14160 1630 aa18.68■□□□□ 0.58
PCDHB9-202ENST00000623266 SHROOM4Q9ULL8 1493 aa18.61■□□□□ 0.57
PCDHB9-202ENST00000623266 CC2D2AQ9P2K1 1620 aa18.56■□□□□ 0.56
PCDHB9-202ENST00000623266 EIF4G1Q04637 1599 aaKnown RBP18.5■□□□□ 0.55
PCDHB9-202ENST00000623266 CECR2Q9BXF3 1484 aa18.49■□□□□ 0.55
PCDHB9-202ENST00000623266 NCAPD3P42695 1498 aa17.95■□□□□ 0.46
PCDHB9-202ENST00000623266 ATAD2BQ9ULI0 1458 aa17.89■□□□□ 0.45
PCDHB9-202ENST00000623266 SMARCA4P51532 1647 aa17.83■□□□□ 0.45
PCDHB9-202ENST00000623266 DNAJC5Q9H3Z4 198 aa17.78■□□□□ 0.44
PCDHB9-202ENST00000623266 SMARCA2P51531 1590 aa17.78■□□□□ 0.44
PCDHB9-202ENST00000623266 HMGXB3Q12766 1538 aa17.73■□□□□ 0.43
PCDHB9-202ENST00000623266 BAZ1AQ9NRL2 1556 aaPredicted RBP17.72■□□□□ 0.43
PCDHB9-202ENST00000623266 NESP48681 1621 aa17.69■□□□□ 0.42
PCDHB9-202ENST00000623266 MROH2BQ7Z745 1585 aa17.68■□□□□ 0.42
PCDHB9-202ENST00000623266 PEG3Q9GZU2 1588 aa17.67■□□□□ 0.42
PCDHB9-202ENST00000623266 ERCC6Q03468 1493 aa17.66■□□□□ 0.42
PCDHB9-202ENST00000623266 BAZ1BQ9UIG0 1483 aaKnown RBP17.66■□□□□ 0.42
PCDHB9-202ENST00000623266 CUX2O14529 1486 aa17.63■□□□□ 0.41
PCDHB9-202ENST00000623266 LAMC3Q9Y6N6 1575 aa17.49■□□□□ 0.39
PCDHB9-202ENST00000623266 WIZO95785 1651 aa17.47■□□□□ 0.39
PCDHB9-202ENST00000623266 THOC2Q8NI27 1593 aaKnown RBP17.43■□□□□ 0.38
PCDHB9-202ENST00000623266 KIF21AQ7Z4S6 1674 aa17.42■□□□□ 0.38
PCDHB9-202ENST00000623266 CADPSQ9ULU8 1353 aa17.4■□□□□ 0.38
PCDHB9-202ENST00000623266 PDS5BQ9NTI5 1447 aa17.39■□□□□ 0.38
PCDHB9-202ENST00000623266 RSF1Q96T23 1441 aaPredicted RBP17.32■□□□□ 0.36
PCDHB9-202ENST00000623266 MRC2Q9UBG0 1479 aa17.22■□□□□ 0.35
PCDHB9-202ENST00000623266 CFTRP13569 1480 aa17.19■□□□□ 0.34
PCDHB9-202ENST00000623266 WDR62O43379 1518 aa17.18■□□□□ 0.34
PCDHB9-202ENST00000623266 FANCD2Q9BXW9 1451 aa17.17■□□□□ 0.34
PCDHB9-202ENST00000623266 TOP2AP11388 1531 aaKnown RBP17.16■□□□□ 0.34
PCDHB9-202ENST00000623266 CEP164Q9UPV0 1460 aa17.15■□□□□ 0.34
PCDHB9-202ENST00000623266 URB2Q14146 1524 aaKnown RBP17.06■□□□□ 0.32
PCDHB9-202ENST00000623266 CCDC88BA6NC98 1476 aa17.06■□□□□ 0.32
PCDHB9-202ENST00000623266 PRDM2Q13029 1718 aa16.97■□□□□ 0.31
PCDHB9-202ENST00000623266 OSCARQ8IYS5 282 aa16.94■□□□□ 0.3
PCDHB9-202ENST00000623266 TRIM41Q8WV44 630 aa16.94■□□□□ 0.3
PCDHB9-202ENST00000623266 ZNF608Q9ULD9 1512 aaPredicted RBP16.86■□□□□ 0.29
PCDHB9-202ENST00000623266 TOPBP1Q92547 1522 aa16.86■□□□□ 0.29
PCDHB9-202ENST00000623266 IFT140Q96RY7 1462 aa16.82■□□□□ 0.28
PCDHB9-202ENST00000623266 ABCC8Q09428 1581 aa16.8■□□□□ 0.28
PCDHB9-202ENST00000623266 DNMBPQ6XZF7 1577 aa16.76■□□□□ 0.27
PCDHB9-202ENST00000623266 TARBP1Q13395 1621 aaKnown RBP16.73■□□□□ 0.27
PCDHB9-202ENST00000623266 AQRO60306 1485 aaKnown RBP eCLIP16.73■□□□□ 0.27
PCDHB9-202ENST00000623266 EIF4G3O43432 1585 aaKnown RBP16.68■□□□□ 0.26
PCDHB9-202ENST00000623266 POLA1P09884 1462 aaPredicted RBP16.68■□□□□ 0.26
PCDHB9-202ENST00000623266 RAD54L2Q9Y4B4 1467 aa16.67■□□□□ 0.26
PCDHB9-202ENST00000623266 RIMBP3CA6NJZ7 1639 aa16.67■□□□□ 0.26
PCDHB9-202ENST00000623266 RIMBP3BA6NNM3 1639 aa16.67■□□□□ 0.26
PCDHB9-202ENST00000623266 RIMBP3Q9UFD9 1639 aa16.67■□□□□ 0.26
PCDHB9-202ENST00000623266 SOGA1O94964 1423 aa16.64■□□□□ 0.25
PCDHB9-202ENST00000623266 TDRD9Q8NDG6 1382 aaKnown RBP16.64■□□□□ 0.25
PCDHB9-202ENST00000623266 CHD1O14646 1710 aa16.6■□□□□ 0.25
PCDHB9-202ENST00000623266 SUPT5HO00267 1087 aaKnown RBP16.6■□□□□ 0.25
PCDHB9-202ENST00000623266 FBLN2P98095 1184 aa16.6■□□□□ 0.25
PCDHB9-202ENST00000623266 ARHGEF11O15085 1522 aa16.6■□□□□ 0.25
PCDHB9-202ENST00000623266 CUX1P39880 1505 aa16.59■□□□□ 0.25
PCDHB9-202ENST00000623266 FGD5Q6ZNL6 1462 aa16.57■□□□□ 0.24
PCDHB9-202ENST00000623266 CYB5RLQ6IPT4 315 aa16.57■□□□□ 0.24
PCDHB9-202ENST00000623266 CHMP7Q8WUX9 453 aaPredicted RBP16.48■□□□□ 0.23
PCDHB9-202ENST00000623266 SNAPC4Q5SXM2 1469 aa16.48■□□□□ 0.23
PCDHB9-202ENST00000623266 ARAP1Q96P48 1450 aa16.45■□□□□ 0.22
PCDHB9-202ENST00000623266 WDR97A6NE52 1622 aa16.45■□□□□ 0.22
PCDHB9-202ENST00000623266 GRIN2BQ13224 1484 aa16.44■□□□□ 0.22
PCDHB9-202ENST00000623266 MAGI1Q96QZ7 1491 aaPredicted RBP16.42■□□□□ 0.22
PCDHB9-202ENST00000623266 GAPVD1Q14C86 1478 aa16.41■□□□□ 0.22
PCDHB9-202ENST00000623266 CLASP1Q7Z460 1538 aa16.4■□□□□ 0.22
PCDHB9-202ENST00000623266 ABCA10Q8WWZ4 1543 aa16.39■□□□□ 0.21
PCDHB9-202ENST00000623266 SYNJ2O15056 1496 aa16.38■□□□□ 0.21
PCDHB9-202ENST00000623266 PBRM1Q86U86 1689 aa16.37■□□□□ 0.21
PCDHB9-202ENST00000623266 SYNJ1O43426 1573 aa16.34■□□□□ 0.21
PCDHB9-202ENST00000623266 TRHP20396 242 aaPredicted RBP16.34■□□□□ 0.21
PCDHB9-202ENST00000623266 ABCA5Q8WWZ7 1642 aa16.34■□□□□ 0.21
PCDHB9-202ENST00000623266 WRNQ14191 1432 aaPredicted RBP eCLIP16.31■□□□□ 0.2
PCDHB9-202ENST00000623266 BIVM-ERCC5R4GMW8 1640 aa16.3■□□□□ 0.2
PCDHB9-202ENST00000623266 TOP2BQ02880 1626 aa16.29■□□□□ 0.2
PCDHB9-202ENST00000623266 GRIN2AQ12879 1464 aa16.22■□□□□ 0.19
PCDHB9-202ENST00000623266 ERCC6L2Q5T890 1561 aa16.21■□□□□ 0.19
PCDHB9-202ENST00000623266 NUP160Q12769 1436 aa16.19■□□□□ 0.18
PCDHB9-202ENST00000623266 CEP170Q5SW79 1584 aa16.19■□□□□ 0.18
PCDHB9-202ENST00000623266 FHAD1B1AJZ9 1412 aa16.19■□□□□ 0.18
PCDHB9-202ENST00000623266 ADAMTS12P58397 1594 aa16.18■□□□□ 0.18
PCDHB9-202ENST00000623266 ERICH3Q5RHP9 1530 aa16.16■□□□□ 0.18
PCDHB9-202ENST00000623266 JPH4Q96JJ6 628 aa16.12■□□□□ 0.17
PCDHB9-202ENST00000623266 SHROOM2Q13796 1616 aa16.12■□□□□ 0.17
PCDHB9-202ENST00000623266 IGF1RP08069 1367 aa16.07■□□□□ 0.16
PCDHB9-202ENST00000623266 PRG4Q92954 1404 aaPredicted RBP16.05■□□□□ 0.16
PCDHB9-202ENST00000623266 KIF27Q86VH2 1401 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms