RNA–Protein interactions for RNA: ENST00000622960.1

ATRX-208, Transcript of ATRX, chromatin remodeler, humanhuman

TSL 5

Gene ATRX, Length 628 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATRX-208ENST00000622960 NISCHQ9Y2I1 1504 aa32.08■■■□□ 2.73
ATRX-208ENST00000622960 CCDC180Q9P1Z9 1646 aa28.76■■■□□ 2.19
ATRX-208ENST00000622960 ABCC9O60706 1549 aa28.37■■■□□ 2.13
ATRX-208ENST00000622960 RB1CC1Q8TDY2 1594 aa27.23■■□□□ 1.95
ATRX-208ENST00000622960 NACADO15069 1562 aa27.09■■□□□ 1.93
ATRX-208ENST00000622960 DCAF8L2P0C7V8 631 aa26.99■■□□□ 1.91
ATRX-208ENST00000622960 MYO15BQ96JP2 1530 aa26.79■■□□□ 1.88
ATRX-208ENST00000622960 ZCCHC6Q5VYS8 1495 aaKnown RBP26.66■■□□□ 1.86
ATRX-208ENST00000622960 DCAF1Q9Y4B6 1507 aa26.55■■□□□ 1.84
ATRX-208ENST00000622960 UNC13AQ9UPW8 1703 aa26.51■■□□□ 1.83
ATRX-208ENST00000622960 PABPN1Q86U42 306 aaKnown RBP eCLIP26.4■■□□□ 1.82
ATRX-208ENST00000622960 BICRAQ9NZM4 1560 aa26.27■■□□□ 1.8
ATRX-208ENST00000622960 SCRIBQ14160 1630 aa26.18■■□□□ 1.78
ATRX-208ENST00000622960 DNAJC5BQ9UF47 199 aa26.14■■□□□ 1.78
ATRX-208ENST00000622960 SHROOM4Q9ULL8 1493 aa26.12■■□□□ 1.77
ATRX-208ENST00000622960 EIF4G1Q04637 1599 aaKnown RBP25.69■■□□□ 1.7
ATRX-208ENST00000622960 CC2D2AQ9P2K1 1620 aa25.65■■□□□ 1.7
ATRX-208ENST00000622960 CECR2Q9BXF3 1484 aa25.55■■□□□ 1.68
ATRX-208ENST00000622960 SMARCA4P51532 1647 aa24.99■■□□□ 1.59
ATRX-208ENST00000622960 BAZ1AQ9NRL2 1556 aaPredicted RBP24.96■■□□□ 1.59
ATRX-208ENST00000622960 SMARCA2P51531 1590 aa24.94■■□□□ 1.58
ATRX-208ENST00000622960 NCAPD3P42695 1498 aa24.93■■□□□ 1.58
ATRX-208ENST00000622960 ATAD2BQ9ULI0 1458 aa24.89■■□□□ 1.58
ATRX-208ENST00000622960 HMGXB3Q12766 1538 aa24.85■■□□□ 1.57
ATRX-208ENST00000622960 BAZ1BQ9UIG0 1483 aaKnown RBP24.76■■□□□ 1.55
ATRX-208ENST00000622960 PEG3Q9GZU2 1588 aa24.73■■□□□ 1.55
ATRX-208ENST00000622960 MROH2BQ7Z745 1585 aa24.68■■□□□ 1.54
ATRX-208ENST00000622960 ERCC6Q03468 1493 aa24.58■■□□□ 1.53
ATRX-208ENST00000622960 WIZO95785 1651 aa24.43■■□□□ 1.5
ATRX-208ENST00000622960 NESP48681 1621 aa24.41■■□□□ 1.5
ATRX-208ENST00000622960 LAMC3Q9Y6N6 1575 aa24.41■■□□□ 1.5
ATRX-208ENST00000622960 CUX2O14529 1486 aa24.39■■□□□ 1.5
ATRX-208ENST00000622960 RSF1Q96T23 1441 aaPredicted RBP24.28■■□□□ 1.48
ATRX-208ENST00000622960 PDS5BQ9NTI5 1447 aa24.26■■□□□ 1.47
ATRX-208ENST00000622960 TOP2AP11388 1531 aaKnown RBP24.2■■□□□ 1.47
ATRX-208ENST00000622960 CADPSQ9ULU8 1353 aa24.2■■□□□ 1.46
ATRX-208ENST00000622960 DNAJC5Q9H3Z4 198 aa24.2■■□□□ 1.46
ATRX-208ENST00000622960 KIF21AQ7Z4S6 1674 aa24.18■■□□□ 1.46
ATRX-208ENST00000622960 THOC2Q8NI27 1593 aaKnown RBP24.16■■□□□ 1.46
ATRX-208ENST00000622960 MRC2Q9UBG0 1479 aa24.01■■□□□ 1.43
ATRX-208ENST00000622960 CEP164Q9UPV0 1460 aa24■■□□□ 1.43
ATRX-208ENST00000622960 CFTRP13569 1480 aa23.99■■□□□ 1.43
ATRX-208ENST00000622960 FANCD2Q9BXW9 1451 aa23.96■■□□□ 1.43
ATRX-208ENST00000622960 WDR62O43379 1518 aa23.92■■□□□ 1.42
ATRX-208ENST00000622960 PRDM2Q13029 1718 aa23.87■■□□□ 1.41
ATRX-208ENST00000622960 CCDC88BA6NC98 1476 aa23.85■■□□□ 1.41
ATRX-208ENST00000622960 URB2Q14146 1524 aaKnown RBP23.69■■□□□ 1.38
ATRX-208ENST00000622960 ABCC8Q09428 1581 aa23.57■■□□□ 1.36
ATRX-208ENST00000622960 TOPBP1Q92547 1522 aa23.52■■□□□ 1.36
ATRX-208ENST00000622960 DNMBPQ6XZF7 1577 aa23.51■■□□□ 1.35
ATRX-208ENST00000622960 SUPT5HO00267 1087 aaKnown RBP23.49■■□□□ 1.35
ATRX-208ENST00000622960 IFT140Q96RY7 1462 aa23.49■■□□□ 1.35
ATRX-208ENST00000622960 ZNF608Q9ULD9 1512 aaPredicted RBP23.33■■□□□ 1.32
ATRX-208ENST00000622960 EIF4G3O43432 1585 aaKnown RBP23.31■■□□□ 1.32
ATRX-208ENST00000622960 OSCARQ8IYS5 282 aa23.29■■□□□ 1.32
ATRX-208ENST00000622960 POLA1P09884 1462 aaPredicted RBP23.29■■□□□ 1.32
ATRX-208ENST00000622960 TARBP1Q13395 1621 aaKnown RBP23.26■■□□□ 1.31
ATRX-208ENST00000622960 FGD5Q6ZNL6 1462 aa23.21■■□□□ 1.31
ATRX-208ENST00000622960 SOGA1O94964 1423 aa23.2■■□□□ 1.3
ATRX-208ENST00000622960 CUX1P39880 1505 aa23.19■■□□□ 1.3
ATRX-208ENST00000622960 WDR97A6NE52 1622 aa23.18■■□□□ 1.3
ATRX-208ENST00000622960 AQRO60306 1485 aaKnown RBP eCLIP23.17■■□□□ 1.3
ATRX-208ENST00000622960 RAD54L2Q9Y4B4 1467 aa23.17■■□□□ 1.3
ATRX-208ENST00000622960 TDRD9Q8NDG6 1382 aaKnown RBP23.08■■□□□ 1.29
ATRX-208ENST00000622960 TRIM41Q8WV44 630 aa23.07■■□□□ 1.28
ATRX-208ENST00000622960 CHD1O14646 1710 aa23.07■■□□□ 1.28
ATRX-208ENST00000622960 FBLN2P98095 1184 aa23.05■■□□□ 1.28
ATRX-208ENST00000622960 GRIN2BQ13224 1484 aa23■■□□□ 1.27
ATRX-208ENST00000622960 SNAPC4Q5SXM2 1469 aa23■■□□□ 1.27
ATRX-208ENST00000622960 WRNQ14191 1432 aaPredicted RBP eCLIP22.99■■□□□ 1.27
ATRX-208ENST00000622960 MAGI1Q96QZ7 1491 aaPredicted RBP22.98■■□□□ 1.27
ATRX-208ENST00000622960 TOP2BQ02880 1626 aa22.97■■□□□ 1.27
ATRX-208ENST00000622960 BIVM-ERCC5R4GMW8 1640 aa22.97■■□□□ 1.27
ATRX-208ENST00000622960 ABCA10Q8WWZ4 1543 aa22.96■■□□□ 1.27
ATRX-208ENST00000622960 PBRM1Q86U86 1689 aa22.96■■□□□ 1.27
ATRX-208ENST00000622960 RIMBP3CA6NJZ7 1639 aa22.95■■□□□ 1.26
ATRX-208ENST00000622960 RIMBP3BA6NNM3 1639 aa22.95■■□□□ 1.26
ATRX-208ENST00000622960 GAPVD1Q14C86 1478 aa22.95■■□□□ 1.26
ATRX-208ENST00000622960 RIMBP3Q9UFD9 1639 aa22.95■■□□□ 1.26
ATRX-208ENST00000622960 CHMP7Q8WUX9 453 aaPredicted RBP22.92■■□□□ 1.26
ATRX-208ENST00000622960 ARHGEF11O15085 1522 aa22.92■■□□□ 1.26
ATRX-208ENST00000622960 ABCA5Q8WWZ7 1642 aa22.9■■□□□ 1.26
ATRX-208ENST00000622960 SYNJ1O43426 1573 aa22.9■■□□□ 1.26
ATRX-208ENST00000622960 SYNJ2O15056 1496 aa22.89■■□□□ 1.25
ATRX-208ENST00000622960 CLASP1Q7Z460 1538 aa22.77■■□□□ 1.24
ATRX-208ENST00000622960 ADAMTS12P58397 1594 aa22.73■■□□□ 1.23
ATRX-208ENST00000622960 ERICH3Q5RHP9 1530 aa22.72■■□□□ 1.23
ATRX-208ENST00000622960 CYB5RLQ6IPT4 315 aa22.7■■□□□ 1.22
ATRX-208ENST00000622960 GRIN2AQ12879 1464 aa22.69■■□□□ 1.22
ATRX-208ENST00000622960 ARAP1Q96P48 1450 aa22.67■■□□□ 1.22
ATRX-208ENST00000622960 FHAD1B1AJZ9 1412 aa22.67■■□□□ 1.22
ATRX-208ENST00000622960 CEP170Q5SW79 1584 aa22.57■■□□□ 1.2
ATRX-208ENST00000622960 NUP160Q12769 1436 aa22.57■■□□□ 1.2
ATRX-208ENST00000622960 KIF27Q86VH2 1401 aa22.56■■□□□ 1.2
ATRX-208ENST00000622960 CUL7Q14999 1698 aa22.49■■□□□ 1.19
ATRX-208ENST00000622960 SHROOM2Q13796 1616 aa22.46■■□□□ 1.19
ATRX-208ENST00000622960 TRHP20396 242 aaPredicted RBP22.44■■□□□ 1.18
ATRX-208ENST00000622960 RUSC2Q8N2Y8 1516 aa22.41■■□□□ 1.18
ATRX-208ENST00000622960 IGF1RP08069 1367 aa22.38■■□□□ 1.17
ATRX-208ENST00000622960 ERCC6L2Q5T890 1561 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms