RNA–Protein interactions for RNA: ENST00000622836.1

PCDHGC3-208, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 3

Gene PCDHGC3, Length 795 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-208ENST00000622836 NISCHQ9Y2I1 1504 aa33.81■■■■□ 3
PCDHGC3-208ENST00000622836 CCDC180Q9P1Z9 1646 aa30.06■■■□□ 2.4
PCDHGC3-208ENST00000622836 ABCC9O60706 1549 aa29.53■■■□□ 2.32
PCDHGC3-208ENST00000622836 DCAF8L2P0C7V8 631 aa28.43■■■□□ 2.14
PCDHGC3-208ENST00000622836 RB1CC1Q8TDY2 1594 aa28.36■■■□□ 2.13
PCDHGC3-208ENST00000622836 NACADO15069 1562 aa28.29■■■□□ 2.12
PCDHGC3-208ENST00000622836 ZCCHC6Q5VYS8 1495 aaKnown RBP28.15■■■□□ 2.1
PCDHGC3-208ENST00000622836 MYO15BQ96JP2 1530 aa28.07■■■□□ 2.08
PCDHGC3-208ENST00000622836 DCAF1Q9Y4B6 1507 aa27.93■■■□□ 2.06
PCDHGC3-208ENST00000622836 UNC13AQ9UPW8 1703 aa27.66■■■□□ 2.02
PCDHGC3-208ENST00000622836 PABPN1Q86U42 306 aaKnown RBP eCLIP27.62■■■□□ 2.01
PCDHGC3-208ENST00000622836 SCRIBQ14160 1630 aa27.49■■□□□ 1.99
PCDHGC3-208ENST00000622836 BICRAQ9NZM4 1560 aa27.43■■□□□ 1.98
PCDHGC3-208ENST00000622836 SHROOM4Q9ULL8 1493 aa27.17■■□□□ 1.94
PCDHGC3-208ENST00000622836 DNAJC5BQ9UF47 199 aa27.09■■□□□ 1.93
PCDHGC3-208ENST00000622836 EIF4G1Q04637 1599 aaKnown RBP26.76■■□□□ 1.87
PCDHGC3-208ENST00000622836 CC2D2AQ9P2K1 1620 aa26.68■■□□□ 1.86
PCDHGC3-208ENST00000622836 CECR2Q9BXF3 1484 aa26.53■■□□□ 1.84
PCDHGC3-208ENST00000622836 SMARCA4P51532 1647 aa26.25■■□□□ 1.79
PCDHGC3-208ENST00000622836 BAZ1AQ9NRL2 1556 aaPredicted RBP26.24■■□□□ 1.79
PCDHGC3-208ENST00000622836 ATAD2BQ9ULI0 1458 aa26.12■■□□□ 1.77
PCDHGC3-208ENST00000622836 SMARCA2P51531 1590 aa26.11■■□□□ 1.77
PCDHGC3-208ENST00000622836 NCAPD3P42695 1498 aa26.09■■□□□ 1.77
PCDHGC3-208ENST00000622836 MROH2BQ7Z745 1585 aa26.07■■□□□ 1.76
PCDHGC3-208ENST00000622836 HMGXB3Q12766 1538 aa25.97■■□□□ 1.75
PCDHGC3-208ENST00000622836 BAZ1BQ9UIG0 1483 aaKnown RBP25.95■■□□□ 1.74
PCDHGC3-208ENST00000622836 PEG3Q9GZU2 1588 aa25.95■■□□□ 1.74
PCDHGC3-208ENST00000622836 WIZO95785 1651 aa25.79■■□□□ 1.72
PCDHGC3-208ENST00000622836 RSF1Q96T23 1441 aaPredicted RBP25.75■■□□□ 1.71
PCDHGC3-208ENST00000622836 NESP48681 1621 aa25.52■■□□□ 1.68
PCDHGC3-208ENST00000622836 TOP2AP11388 1531 aaKnown RBP25.51■■□□□ 1.67
PCDHGC3-208ENST00000622836 ERCC6Q03468 1493 aa25.5■■□□□ 1.67
PCDHGC3-208ENST00000622836 LAMC3Q9Y6N6 1575 aa25.44■■□□□ 1.66
PCDHGC3-208ENST00000622836 CADPSQ9ULU8 1353 aa25.37■■□□□ 1.65
PCDHGC3-208ENST00000622836 PDS5BQ9NTI5 1447 aa25.3■■□□□ 1.64
PCDHGC3-208ENST00000622836 CCDC88BA6NC98 1476 aa25.21■■□□□ 1.63
PCDHGC3-208ENST00000622836 SUPT5HO00267 1087 aaKnown RBP25.2■■□□□ 1.62
PCDHGC3-208ENST00000622836 KIF21AQ7Z4S6 1674 aa25.2■■□□□ 1.62
PCDHGC3-208ENST00000622836 CFTRP13569 1480 aa25.18■■□□□ 1.62
PCDHGC3-208ENST00000622836 CUX2O14529 1486 aa25.17■■□□□ 1.62
PCDHGC3-208ENST00000622836 THOC2Q8NI27 1593 aaKnown RBP25.1■■□□□ 1.61
PCDHGC3-208ENST00000622836 FANCD2Q9BXW9 1451 aa25.09■■□□□ 1.61
PCDHGC3-208ENST00000622836 CEP164Q9UPV0 1460 aa25.08■■□□□ 1.6
PCDHGC3-208ENST00000622836 MRC2Q9UBG0 1479 aa25.03■■□□□ 1.6
PCDHGC3-208ENST00000622836 PRDM2Q13029 1718 aa24.98■■□□□ 1.59
PCDHGC3-208ENST00000622836 WDR62O43379 1518 aa24.91■■□□□ 1.58
PCDHGC3-208ENST00000622836 URB2Q14146 1524 aaKnown RBP24.81■■□□□ 1.56
PCDHGC3-208ENST00000622836 ABCC8Q09428 1581 aa24.67■■□□□ 1.54
PCDHGC3-208ENST00000622836 TOPBP1Q92547 1522 aa24.67■■□□□ 1.54
PCDHGC3-208ENST00000622836 DNMBPQ6XZF7 1577 aa24.63■■□□□ 1.53
PCDHGC3-208ENST00000622836 IFT140Q96RY7 1462 aa24.54■■□□□ 1.52
PCDHGC3-208ENST00000622836 CUX1P39880 1505 aa24.45■■□□□ 1.51
PCDHGC3-208ENST00000622836 POLA1P09884 1462 aaPredicted RBP24.45■■□□□ 1.51
PCDHGC3-208ENST00000622836 DNAJC5Q9H3Z4 198 aa24.45■■□□□ 1.5
PCDHGC3-208ENST00000622836 ZNF608Q9ULD9 1512 aaPredicted RBP24.42■■□□□ 1.5
PCDHGC3-208ENST00000622836 FGD5Q6ZNL6 1462 aa24.41■■□□□ 1.5
PCDHGC3-208ENST00000622836 SOGA1O94964 1423 aa24.38■■□□□ 1.49
PCDHGC3-208ENST00000622836 TARBP1Q13395 1621 aaKnown RBP24.37■■□□□ 1.49
PCDHGC3-208ENST00000622836 RAD54L2Q9Y4B4 1467 aa24.37■■□□□ 1.49
PCDHGC3-208ENST00000622836 WRNQ14191 1432 aaPredicted RBP eCLIP24.33■■□□□ 1.49
PCDHGC3-208ENST00000622836 EIF4G3O43432 1585 aaKnown RBP24.32■■□□□ 1.48
PCDHGC3-208ENST00000622836 AQRO60306 1485 aaKnown RBP eCLIP24.3■■□□□ 1.48
PCDHGC3-208ENST00000622836 TDRD9Q8NDG6 1382 aaKnown RBP24.26■■□□□ 1.47
PCDHGC3-208ENST00000622836 TOP2BQ02880 1626 aa24.24■■□□□ 1.47
PCDHGC3-208ENST00000622836 SYNJ1O43426 1573 aa24.23■■□□□ 1.47
PCDHGC3-208ENST00000622836 BIVM-ERCC5R4GMW8 1640 aa24.22■■□□□ 1.47
PCDHGC3-208ENST00000622836 WDR97A6NE52 1622 aa24.18■■□□□ 1.46
PCDHGC3-208ENST00000622836 OSCARQ8IYS5 282 aa24.18■■□□□ 1.46
PCDHGC3-208ENST00000622836 ABCA10Q8WWZ4 1543 aa24.15■■□□□ 1.46
PCDHGC3-208ENST00000622836 FBLN2P98095 1184 aa24.11■■□□□ 1.45
PCDHGC3-208ENST00000622836 GRIN2BQ13224 1484 aa24.1■■□□□ 1.45
PCDHGC3-208ENST00000622836 GAPVD1Q14C86 1478 aa24.1■■□□□ 1.45
PCDHGC3-208ENST00000622836 SNAPC4Q5SXM2 1469 aa24.07■■□□□ 1.44
PCDHGC3-208ENST00000622836 ABCA5Q8WWZ7 1642 aa24.03■■□□□ 1.44
PCDHGC3-208ENST00000622836 PBRM1Q86U86 1689 aa24.02■■□□□ 1.44
PCDHGC3-208ENST00000622836 MAGI1Q96QZ7 1491 aaPredicted RBP24.02■■□□□ 1.44
PCDHGC3-208ENST00000622836 CHD1O14646 1710 aa24.02■■□□□ 1.44
PCDHGC3-208ENST00000622836 CHMP7Q8WUX9 453 aaPredicted RBP24■■□□□ 1.43
PCDHGC3-208ENST00000622836 SYNJ2O15056 1496 aa23.94■■□□□ 1.42
PCDHGC3-208ENST00000622836 ERICH3Q5RHP9 1530 aa23.86■■□□□ 1.41
PCDHGC3-208ENST00000622836 KIF27Q86VH2 1401 aa23.84■■□□□ 1.41
PCDHGC3-208ENST00000622836 ADAMTS12P58397 1594 aa23.83■■□□□ 1.41
PCDHGC3-208ENST00000622836 FHAD1B1AJZ9 1412 aa23.82■■□□□ 1.4
PCDHGC3-208ENST00000622836 TRIM41Q8WV44 630 aa23.78■■□□□ 1.4
PCDHGC3-208ENST00000622836 GRIN2AQ12879 1464 aa23.78■■□□□ 1.4
PCDHGC3-208ENST00000622836 ARHGEF11O15085 1522 aa23.74■■□□□ 1.39
PCDHGC3-208ENST00000622836 RIMBP3CA6NJZ7 1639 aa23.74■■□□□ 1.39
PCDHGC3-208ENST00000622836 RIMBP3BA6NNM3 1639 aa23.74■■□□□ 1.39
PCDHGC3-208ENST00000622836 RIMBP3Q9UFD9 1639 aa23.74■■□□□ 1.39
PCDHGC3-208ENST00000622836 CLASP1Q7Z460 1538 aa23.74■■□□□ 1.39
PCDHGC3-208ENST00000622836 IGF1RP08069 1367 aa23.69■■□□□ 1.38
PCDHGC3-208ENST00000622836 CUL7Q14999 1698 aa23.64■■□□□ 1.38
PCDHGC3-208ENST00000622836 NUP160Q12769 1436 aa23.64■■□□□ 1.37
PCDHGC3-208ENST00000622836 CEP170Q5SW79 1584 aa23.64■■□□□ 1.37
PCDHGC3-208ENST00000622836 CARMIL1Q5VZK9 1371 aa23.59■■□□□ 1.37
PCDHGC3-208ENST00000622836 CYB5RLQ6IPT4 315 aa23.58■■□□□ 1.37
PCDHGC3-208ENST00000622836 RUSC2Q8N2Y8 1516 aa23.56■■□□□ 1.36
PCDHGC3-208ENST00000622836 ARAP1Q96P48 1450 aa23.54■■□□□ 1.36
PCDHGC3-208ENST00000622836 JPH4Q96JJ6 628 aa23.46■■□□□ 1.35
PCDHGC3-208ENST00000622836 SHROOM2Q13796 1616 aa23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms