RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 NISCHQ9Y2I1 1504 aa59.75■■■■■ 7.15
CPSF1-214ENST00000622776 ABCC9O60706 1549 aa53.77■■■■■ 6.2
CPSF1-214ENST00000622776 CCDC180Q9P1Z9 1646 aa53.59■■■■■ 6.17
CPSF1-214ENST00000622776 RB1CC1Q8TDY2 1594 aa51.11■■■■■ 5.77
CPSF1-214ENST00000622776 NACADO15069 1562 aa50.74■■■■■ 5.71
CPSF1-214ENST00000622776 DNAJC5BQ9UF47 199 aa50.58■■■■■ 5.69
CPSF1-214ENST00000622776 DCAF8L2P0C7V8 631 aa50.54■■■■■ 5.68
CPSF1-214ENST00000622776 PABPN1Q86U42 306 aaKnown RBP eCLIP50.09■■■■■ 5.618e-6■□□□□ 8.9
CPSF1-214ENST00000622776 MYO15BQ96JP2 1530 aa50.01■■■■■ 5.6
CPSF1-214ENST00000622776 UNC13AQ9UPW8 1703 aa49.88■■■■■ 5.58
CPSF1-214ENST00000622776 BICRAQ9NZM4 1560 aa49.62■■■■■ 5.53
CPSF1-214ENST00000622776 ZCCHC6Q5VYS8 1495 aaKnown RBP49.48■■■■■ 5.51
CPSF1-214ENST00000622776 DCAF1Q9Y4B6 1507 aa49.34■■■■■ 5.49
CPSF1-214ENST00000622776 SHROOM4Q9ULL8 1493 aa48.94■■■■■ 5.43
CPSF1-214ENST00000622776 SCRIBQ14160 1630 aa48.85■■■■■ 5.41
CPSF1-214ENST00000622776 CC2D2AQ9P2K1 1620 aa48.54■■■■■ 5.36
CPSF1-214ENST00000622776 CECR2Q9BXF3 1484 aa48.45■■■■■ 5.35
CPSF1-214ENST00000622776 EIF4G1Q04637 1599 aaKnown RBP48.41■■■■■ 5.34
CPSF1-214ENST00000622776 NCAPD3P42695 1498 aa46.88■■■■■ 5.09
CPSF1-214ENST00000622776 ATAD2BQ9ULI0 1458 aa46.71■■■■■ 5.07
CPSF1-214ENST00000622776 SMARCA4P51532 1647 aa46.6■■■■■ 5.05
CPSF1-214ENST00000622776 SMARCA2P51531 1590 aa46.56■■■■■ 5.04
CPSF1-214ENST00000622776 DNAJC5Q9H3Z4 198 aa46.53■■■■■ 5.04
CPSF1-214ENST00000622776 HMGXB3Q12766 1538 aa46.48■■■■■ 5.03
CPSF1-214ENST00000622776 ERCC6Q03468 1493 aa46.43■■■■■ 5.02
CPSF1-214ENST00000622776 BAZ1AQ9NRL2 1556 aaPredicted RBP46.37■■■■■ 5.01
CPSF1-214ENST00000622776 CUX2O14529 1486 aa46.37■■■■■ 5.01
CPSF1-214ENST00000622776 BAZ1BQ9UIG0 1483 aaKnown RBP46.24■■■■■ 4.99
CPSF1-214ENST00000622776 NESP48681 1621 aa46.16■■■■■ 4.98
CPSF1-214ENST00000622776 PEG3Q9GZU2 1588 aa46.15■■■■■ 4.98
CPSF1-214ENST00000622776 MROH2BQ7Z745 1585 aa46.04■■■■■ 4.96
CPSF1-214ENST00000622776 LAMC3Q9Y6N6 1575 aa45.79■■■■■ 4.92
CPSF1-214ENST00000622776 THOC2Q8NI27 1593 aaKnown RBP45.67■■■■■ 4.9
CPSF1-214ENST00000622776 PDS5BQ9NTI5 1447 aa45.58■■■■■ 4.89
CPSF1-214ENST00000622776 KIF21AQ7Z4S6 1674 aa45.5■■■■■ 4.87
CPSF1-214ENST00000622776 CADPSQ9ULU8 1353 aa45.46■■■■■ 4.87
CPSF1-214ENST00000622776 WIZO95785 1651 aa45.45■■■■■ 4.87
CPSF1-214ENST00000622776 MRC2Q9UBG0 1479 aa45.17■■■■■ 4.82
CPSF1-214ENST00000622776 RSF1Q96T23 1441 aaPredicted RBP45.07■■■■■ 4.81
CPSF1-214ENST00000622776 WDR62O43379 1518 aa45.04■■■■■ 4.8
CPSF1-214ENST00000622776 CEP164Q9UPV0 1460 aa44.97■■■■■ 4.79
CPSF1-214ENST00000622776 FANCD2Q9BXW9 1451 aa44.92■■■■■ 4.78
CPSF1-214ENST00000622776 CFTRP13569 1480 aa44.9■■■■■ 4.78
CPSF1-214ENST00000622776 TOP2AP11388 1531 aaKnown RBP44.88■■■■■ 4.78
CPSF1-214ENST00000622776 URB2Q14146 1524 aaKnown RBP44.55■■■■■ 4.72
CPSF1-214ENST00000622776 TRIM41Q8WV44 630 aa44.43■■■■■ 4.7
CPSF1-214ENST00000622776 CCDC88BA6NC98 1476 aa44.4■■■■■ 4.7
CPSF1-214ENST00000622776 PRDM2Q13029 1718 aa44.34■■■■■ 4.69
CPSF1-214ENST00000622776 OSCARQ8IYS5 282 aa44.3■■■■■ 4.68
CPSF1-214ENST00000622776 IFT140Q96RY7 1462 aa44.08■■■■■ 4.65
CPSF1-214ENST00000622776 TOPBP1Q92547 1522 aa44.06■■■■■ 4.64
CPSF1-214ENST00000622776 ZNF608Q9ULD9 1512 aaPredicted RBP44.03■■■■■ 4.64
CPSF1-214ENST00000622776 ABCC8Q09428 1581 aa43.96■■■■■ 4.63
CPSF1-214ENST00000622776 DNMBPQ6XZF7 1577 aa43.86■■■■■ 4.61
CPSF1-214ENST00000622776 EIF4G3O43432 1585 aaKnown RBP43.73■■■■■ 4.59
CPSF1-214ENST00000622776 RIMBP3CA6NJZ7 1639 aa43.65■■■■■ 4.58
CPSF1-214ENST00000622776 RIMBP3BA6NNM3 1639 aa43.65■■■■■ 4.58
CPSF1-214ENST00000622776 RIMBP3Q9UFD9 1639 aa43.65■■■■■ 4.58
CPSF1-214ENST00000622776 TARBP1Q13395 1621 aaKnown RBP43.64■■■■■ 4.58
CPSF1-214ENST00000622776 AQRO60306 1485 aaKnown RBP eCLIP43.64■■■■■ 4.58
CPSF1-214ENST00000622776 POLA1P09884 1462 aaPredicted RBP43.6■■■■■ 4.57
CPSF1-214ENST00000622776 ARHGEF11O15085 1522 aa43.53■■■■■ 4.56
CPSF1-214ENST00000622776 RAD54L2Q9Y4B4 1467 aa43.45■■■■■ 4.55
CPSF1-214ENST00000622776 SOGA1O94964 1423 aa43.43■■■■■ 4.54
CPSF1-214ENST00000622776 CHD1O14646 1710 aa43.41■■■■■ 4.54
CPSF1-214ENST00000622776 FBLN2P98095 1184 aa43.39■■■■■ 4.54
CPSF1-214ENST00000622776 TDRD9Q8NDG6 1382 aaKnown RBP43.37■■■■■ 4.53
CPSF1-214ENST00000622776 FGD5Q6ZNL6 1462 aa43.32■■■■■ 4.52
CPSF1-214ENST00000622776 CYB5RLQ6IPT4 315 aa43.27■■■■■ 4.52
CPSF1-214ENST00000622776 CUX1P39880 1505 aa43.26■■■■■ 4.52
CPSF1-214ENST00000622776 WDR97A6NE52 1622 aa43.18■■■■■ 4.5
CPSF1-214ENST00000622776 SNAPC4Q5SXM2 1469 aa43.16■■■■■ 4.5
CPSF1-214ENST00000622776 ARAP1Q96P48 1450 aa43.1■■■■■ 4.49
CPSF1-214ENST00000622776 CHMP7Q8WUX9 453 aaPredicted RBP43.06■■■■■ 4.48
CPSF1-214ENST00000622776 GRIN2BQ13224 1484 aa43.05■■■■■ 4.48
CPSF1-214ENST00000622776 MAGI1Q96QZ7 1491 aaPredicted RBP43.05■■■■■ 4.48
CPSF1-214ENST00000622776 SUPT5HO00267 1087 aaKnown RBP43.04■■■■■ 4.48
CPSF1-214ENST00000622776 CLASP1Q7Z460 1538 aa42.95■■■■■ 4.47
CPSF1-214ENST00000622776 SYNJ1O43426 1573 aa42.91■■■■■ 4.46
CPSF1-214ENST00000622776 SYNJ2O15056 1496 aa42.91■■■■■ 4.46
CPSF1-214ENST00000622776 GAPVD1Q14C86 1478 aa42.88■■■■■ 4.46
CPSF1-214ENST00000622776 ABCA10Q8WWZ4 1543 aa42.82■■■■■ 4.45
CPSF1-214ENST00000622776 TRHP20396 242 aaPredicted RBP42.82■■■■■ 4.45
CPSF1-214ENST00000622776 PBRM1Q86U86 1689 aa42.79■■■■■ 4.44
CPSF1-214ENST00000622776 ABCA5Q8WWZ7 1642 aa42.72■■■■■ 4.43
CPSF1-214ENST00000622776 WRNQ14191 1432 aaPredicted RBP eCLIP42.64■■■■■ 4.42
CPSF1-214ENST00000622776 TOP2BQ02880 1626 aa42.51■■■■■ 4.4
CPSF1-214ENST00000622776 BIVM-ERCC5R4GMW8 1640 aa42.49■■■■■ 4.39
CPSF1-214ENST00000622776 GRIN2AQ12879 1464 aa42.49■■■■■ 4.39
CPSF1-214ENST00000622776 ADAMTS12P58397 1594 aa42.41■■■■■ 4.38
CPSF1-214ENST00000622776 NUP160Q12769 1436 aa42.36■■■■■ 4.37
CPSF1-214ENST00000622776 FHAD1B1AJZ9 1412 aa42.34■■■■■ 4.37
CPSF1-214ENST00000622776 CEP170Q5SW79 1584 aa42.31■■■■■ 4.36
CPSF1-214ENST00000622776 ERCC6L2Q5T890 1561 aa42.28■■■■■ 4.36
CPSF1-214ENST00000622776 ERICH3Q5RHP9 1530 aa42.27■■■■■ 4.36
CPSF1-214ENST00000622776 SHROOM2Q13796 1616 aa42.13■■■■■ 4.34
CPSF1-214ENST00000622776 PRG4Q92954 1404 aaPredicted RBP41.97■■■■■ 4.31
CPSF1-214ENST00000622776 JPH4Q96JJ6 628 aa41.97■■■■■ 4.31
CPSF1-214ENST00000622776 RUSC2Q8N2Y8 1516 aa41.8■■■■■ 4.28
CPSF1-214ENST00000622776 IGF1RP08069 1367 aa41.76■■■■■ 4.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms